data_3FI7 # _entry.id 3FI7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3FI7 RCSB RCSB050622 WWPDB D_1000050622 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FI7 _pdbx_database_status.recvd_initial_deposition_date 2008-12-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bublitz, M.' 1 'Polle, L.' 2 'Holland, C.' 3 'Nimtz, M.' 4 'Heinz, D.W.' 5 'Schubert, W.D.' 6 # _citation.id primary _citation.title ;Structural basis for autoinhibition and activation of Auto, a virulence-associated peptidoglycan hydrolase of Listeria monocytogenes. ; _citation.journal_abbrev Mol.Microbiol. _citation.journal_volume 71 _citation.page_first 1509 _citation.page_last 1522 _citation.year 2009 _citation.journal_id_ASTM MOMIEE _citation.country UK _citation.journal_id_ISSN 0950-382X _citation.journal_id_CSD 2007 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19210622 _citation.pdbx_database_id_DOI 10.1111/j.1365-2958.2009.06619.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bublitz, M.' 1 primary 'Polle, L.' 2 primary 'Holland, C.' 3 primary 'Heinz, D.W.' 4 primary 'Nimtz, M.' 5 primary 'Schubert, W.D.' 6 # _cell.entry_id 3FI7 _cell.length_a 133.500 _cell.length_b 133.500 _cell.length_c 88.900 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FI7 _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lmo1076 protein' 20745.906 1 3.2.1.96 ? 'fused residues 52-71 and 84-243' 'A FUSION OF THREE NON-PHYSIOLOGICAL RESIDUES (GAM), LMO1076 52-71, LMO1076 84-243' 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 158 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMESEEPVFSLEQNRDDAMAALASTPTFQQTFINSISTQAMDLCKKYNLYPSVMIAQAALESNWGRSELGKAPNYNLFG IKGSYNGKSVTMKTWEYSDSKGWYQINANFAKYPSHKESLEDNAKKLRNGPSWDSSYYKGAWRENAKTYKDATAWLQGRY ATDNTYASKLNTLISSYNLTQYD ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMESEEPVFSLEQNRDDAMAALASTPTFQQTFINSISTQAMDLCKKYNLYPSVMIAQAALESNWGRSELGKAPNYNLFG IKGSYNGKSVTMKTWEYSDSKGWYQINANFAKYPSHKESLEDNAKKLRNGPSWDSSYYKGAWRENAKTYKDATAWLQGRY ATDNTYASKLNTLISSYNLTQYD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 GLU n 1 5 SER n 1 6 GLU n 1 7 GLU n 1 8 PRO n 1 9 VAL n 1 10 PHE n 1 11 SER n 1 12 LEU n 1 13 GLU n 1 14 GLN n 1 15 ASN n 1 16 ARG n 1 17 ASP n 1 18 ASP n 1 19 ALA n 1 20 MET n 1 21 ALA n 1 22 ALA n 1 23 LEU n 1 24 ALA n 1 25 SER n 1 26 THR n 1 27 PRO n 1 28 THR n 1 29 PHE n 1 30 GLN n 1 31 GLN n 1 32 THR n 1 33 PHE n 1 34 ILE n 1 35 ASN n 1 36 SER n 1 37 ILE n 1 38 SER n 1 39 THR n 1 40 GLN n 1 41 ALA n 1 42 MET n 1 43 ASP n 1 44 LEU n 1 45 CYS n 1 46 LYS n 1 47 LYS n 1 48 TYR n 1 49 ASN n 1 50 LEU n 1 51 TYR n 1 52 PRO n 1 53 SER n 1 54 VAL n 1 55 MET n 1 56 ILE n 1 57 ALA n 1 58 GLN n 1 59 ALA n 1 60 ALA n 1 61 LEU n 1 62 GLU n 1 63 SER n 1 64 ASN n 1 65 TRP n 1 66 GLY n 1 67 ARG n 1 68 SER n 1 69 GLU n 1 70 LEU n 1 71 GLY n 1 72 LYS n 1 73 ALA n 1 74 PRO n 1 75 ASN n 1 76 TYR n 1 77 ASN n 1 78 LEU n 1 79 PHE n 1 80 GLY n 1 81 ILE n 1 82 LYS n 1 83 GLY n 1 84 SER n 1 85 TYR n 1 86 ASN n 1 87 GLY n 1 88 LYS n 1 89 SER n 1 90 VAL n 1 91 THR n 1 92 MET n 1 93 LYS n 1 94 THR n 1 95 TRP n 1 96 GLU n 1 97 TYR n 1 98 SER n 1 99 ASP n 1 100 SER n 1 101 LYS n 1 102 GLY n 1 103 TRP n 1 104 TYR n 1 105 GLN n 1 106 ILE n 1 107 ASN n 1 108 ALA n 1 109 ASN n 1 110 PHE n 1 111 ALA n 1 112 LYS n 1 113 TYR n 1 114 PRO n 1 115 SER n 1 116 HIS n 1 117 LYS n 1 118 GLU n 1 119 SER n 1 120 LEU n 1 121 GLU n 1 122 ASP n 1 123 ASN n 1 124 ALA n 1 125 LYS n 1 126 LYS n 1 127 LEU n 1 128 ARG n 1 129 ASN n 1 130 GLY n 1 131 PRO n 1 132 SER n 1 133 TRP n 1 134 ASP n 1 135 SER n 1 136 SER n 1 137 TYR n 1 138 TYR n 1 139 LYS n 1 140 GLY n 1 141 ALA n 1 142 TRP n 1 143 ARG n 1 144 GLU n 1 145 ASN n 1 146 ALA n 1 147 LYS n 1 148 THR n 1 149 TYR n 1 150 LYS n 1 151 ASP n 1 152 ALA n 1 153 THR n 1 154 ALA n 1 155 TRP n 1 156 LEU n 1 157 GLN n 1 158 GLY n 1 159 ARG n 1 160 TYR n 1 161 ALA n 1 162 THR n 1 163 ASP n 1 164 ASN n 1 165 THR n 1 166 TYR n 1 167 ALA n 1 168 SER n 1 169 LYS n 1 170 LEU n 1 171 ASN n 1 172 THR n 1 173 LEU n 1 174 ILE n 1 175 SER n 1 176 SER n 1 177 TYR n 1 178 ASN n 1 179 LEU n 1 180 THR n 1 181 GLN n 1 182 TYR n 1 183 ASP n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 4 23 ? ? lmo1076 ? EGD-e ? ? ? ? 'Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)' 169963 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21 Codon Plus (DE3) RIL' ? ? ? ? ? ? ? Plasmid ? ? ? pETM30 ? ? 1 2 sample ? 24 183 ? ? lmo1076 ? EGD-e ? ? ? ? 'Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)' 169963 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21 Codon Plus (DE3) RIL' ? ? ? ? ? ? ? Plasmid ? ? ? pETM30 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 3FI7 3FI7 1 GAM 49 ? 2 UNP Q8Y842_LISMO Q8Y842 1 ESEEPVFSLEQNRDDAMAAL 52 ? 3 UNP Q8Y842_LISMO Q8Y842 1 ;ASTPTFQQTFINSISTQAMDLCKKYNLYPSVMIAQAALESNWGRSELGKAPNYNLFGIKGSYNGKSVTMKTWEYSDSKGW YQINANFAKYPSHKESLEDNAKKLRNGPSWDSSYYKGAWRENAKTYKDATAWLQGRYATDNTYASKLNTLISSYNLTQYD ; 84 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FI7 A 1 ? 3 ? 3FI7 49 ? 51 ? 49 51 2 2 3FI7 A 4 ? 23 ? Q8Y842 52 ? 71 ? 52 71 3 3 3FI7 A 24 ? 183 ? Q8Y842 84 ? 243 ? 84 243 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3FI7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 5.48 _exptl_crystal.density_percent_sol 77.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details '1M ammonium sulfate, 0.1M sodium acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-03-06 _diffrn_detector.details 'cylindrical grazing incidence mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'cooled channel-cut silicon monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.934 # _reflns.entry_id 3FI7 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 2.35 _reflns.number_obs 19770 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.069 _reflns.pdbx_netI_over_sigmaI 37.71 _reflns.B_iso_Wilson_estimate 52.3 _reflns.pdbx_redundancy 15.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.43 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.525 _reflns_shell.meanI_over_sigI_obs 6.49 _reflns_shell.pdbx_redundancy 16.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1949 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3FI7 _refine.ls_number_reflns_obs 19521 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.48 _refine.ls_d_res_high 2.35 _refine.ls_percent_reflns_obs 98.03 _refine.ls_R_factor_obs 0.181 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.180 _refine.ls_R_factor_R_free 0.204 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.14 _refine.ls_number_reflns_R_free 1003 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 41.81 _refine.aniso_B[1][1] 0.821 _refine.aniso_B[2][2] 0.821 _refine.aniso_B[3][3] -1.6419 _refine.aniso_B[1][2] 0.0 _refine.aniso_B[1][3] 0.0 _refine.aniso_B[2][3] 0.0 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.374 _refine.solvent_model_param_bsol 69.143 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model anisotropic _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.30 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error 19.73 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1421 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 158 _refine_hist.number_atoms_total 1584 _refine_hist.d_res_high 2.35 _refine_hist.d_res_low 27.48 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1468 'X-RAY DIFFRACTION' ? f_angle_d 0.883 ? ? 1993 'X-RAY DIFFRACTION' ? f_chiral_restr 0.063 ? ? 203 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 256 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.015 ? ? 517 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 7 2.3512 2.4751 2596 0.2267 99.00 0.2358 . . 147 . . 2596 . 'X-RAY DIFFRACTION' 7 2.4751 2.6301 2589 0.2047 98.00 0.2542 . . 150 . . 2589 . 'X-RAY DIFFRACTION' 7 2.6301 2.8330 2595 0.1818 98.00 0.2022 . . 137 . . 2595 . 'X-RAY DIFFRACTION' 7 2.8330 3.1177 2642 0.1740 99.00 0.2017 . . 134 . . 2642 . 'X-RAY DIFFRACTION' 7 3.1177 3.5680 2672 0.1643 99.00 0.1835 . . 142 . . 2672 . 'X-RAY DIFFRACTION' 7 3.5680 4.4921 2686 0.1343 99.00 0.1544 . . 137 . . 2686 . 'X-RAY DIFFRACTION' 7 4.4921 27.4796 2738 0.1851 95.00 0.2020 . . 156 . . 2738 . 'X-RAY DIFFRACTION' # _struct.entry_id 3FI7 _struct.title 'Crystal Structure of the autolysin Auto (Lmo1076) from Listeria monocytogenes, catalytic domain' _struct.pdbx_descriptor 'Lmo1076 protein (E.C.3.2.1.96)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FI7 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Listeria monocytogenes, autolysin, N acetylglucosaminidase, peptidoglycan hydrolase, autoinhibition, GH73, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 11 ? LEU A 23 ? SER A 59 LEU A 71 1 ? 13 HELX_P HELX_P2 2 THR A 28 ? TYR A 48 ? THR A 88 TYR A 108 1 ? 21 HELX_P HELX_P3 3 TYR A 51 ? ASN A 64 ? TYR A 111 ASN A 124 1 ? 14 HELX_P HELX_P4 4 SER A 115 ? GLY A 130 ? SER A 175 GLY A 190 1 ? 16 HELX_P HELX_P5 5 TYR A 138 ? TRP A 142 ? TYR A 198 TRP A 202 5 ? 5 HELX_P HELX_P6 6 THR A 148 ? GLN A 157 ? THR A 208 GLN A 217 1 ? 10 HELX_P HELX_P7 7 THR A 165 ? TYR A 177 ? THR A 225 TYR A 237 1 ? 13 HELX_P HELX_P8 8 ASN A 178 ? ASP A 183 ? ASN A 238 ASP A 243 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 73 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 133 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 74 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 134 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.56 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 89 ? SER A 98 ? SER A 149 SER A 158 A 2 GLY A 102 ? ALA A 111 ? GLY A 162 ALA A 171 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id SER _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 98 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id SER _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 158 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id GLY _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 102 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id GLY _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 162 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH C . ? HOH A 18 . ? 8_555 ? 2 AC1 7 ALA A 24 ? ALA A 84 . ? 1_555 ? 3 AC1 7 SER A 25 ? SER A 85 . ? 1_555 ? 4 AC1 7 THR A 26 ? THR A 86 . ? 1_555 ? 5 AC1 7 THR A 28 ? THR A 88 . ? 8_555 ? 6 AC1 7 PHE A 29 ? PHE A 89 . ? 8_555 ? 7 AC1 7 HOH C . ? HOH A 300 . ? 1_555 ? # _database_PDB_matrix.entry_id 3FI7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FI7 _atom_sites.fract_transf_matrix[1][1] 0.007491 _atom_sites.fract_transf_matrix[1][2] 0.004325 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008649 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011249 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 49 ? ? ? A . n A 1 2 ALA 2 50 ? ? ? A . n A 1 3 MET 3 51 ? ? ? A . n A 1 4 GLU 4 52 ? ? ? A . n A 1 5 SER 5 53 ? ? ? A . n A 1 6 GLU 6 54 ? ? ? A . n A 1 7 GLU 7 55 55 GLU GLU A . n A 1 8 PRO 8 56 56 PRO PRO A . n A 1 9 VAL 9 57 57 VAL VAL A . n A 1 10 PHE 10 58 58 PHE PHE A . n A 1 11 SER 11 59 59 SER SER A . n A 1 12 LEU 12 60 60 LEU LEU A . n A 1 13 GLU 13 61 61 GLU GLU A . n A 1 14 GLN 14 62 62 GLN GLN A . n A 1 15 ASN 15 63 63 ASN ASN A . n A 1 16 ARG 16 64 64 ARG ARG A . n A 1 17 ASP 17 65 65 ASP ASP A . n A 1 18 ASP 18 66 66 ASP ASP A . n A 1 19 ALA 19 67 67 ALA ALA A . n A 1 20 MET 20 68 68 MET MET A . n A 1 21 ALA 21 69 69 ALA ALA A . n A 1 22 ALA 22 70 70 ALA ALA A . n A 1 23 LEU 23 71 71 LEU LEU A . n A 1 24 ALA 24 84 84 ALA ALA A . n A 1 25 SER 25 85 85 SER SER A . n A 1 26 THR 26 86 86 THR THR A . n A 1 27 PRO 27 87 87 PRO PRO A . n A 1 28 THR 28 88 88 THR THR A . n A 1 29 PHE 29 89 89 PHE PHE A . n A 1 30 GLN 30 90 90 GLN GLN A . n A 1 31 GLN 31 91 91 GLN GLN A . n A 1 32 THR 32 92 92 THR THR A . n A 1 33 PHE 33 93 93 PHE PHE A . n A 1 34 ILE 34 94 94 ILE ILE A . n A 1 35 ASN 35 95 95 ASN ASN A . n A 1 36 SER 36 96 96 SER SER A . n A 1 37 ILE 37 97 97 ILE ILE A . n A 1 38 SER 38 98 98 SER SER A . n A 1 39 THR 39 99 99 THR THR A . n A 1 40 GLN 40 100 100 GLN GLN A . n A 1 41 ALA 41 101 101 ALA ALA A . n A 1 42 MET 42 102 102 MET MET A . n A 1 43 ASP 43 103 103 ASP ASP A . n A 1 44 LEU 44 104 104 LEU LEU A . n A 1 45 CYS 45 105 105 CYS CYS A . n A 1 46 LYS 46 106 106 LYS LYS A . n A 1 47 LYS 47 107 107 LYS LYS A . n A 1 48 TYR 48 108 108 TYR TYR A . n A 1 49 ASN 49 109 109 ASN ASN A . n A 1 50 LEU 50 110 110 LEU LEU A . n A 1 51 TYR 51 111 111 TYR TYR A . n A 1 52 PRO 52 112 112 PRO PRO A . n A 1 53 SER 53 113 113 SER SER A . n A 1 54 VAL 54 114 114 VAL VAL A . n A 1 55 MET 55 115 115 MET MET A . n A 1 56 ILE 56 116 116 ILE ILE A . n A 1 57 ALA 57 117 117 ALA ALA A . n A 1 58 GLN 58 118 118 GLN GLN A . n A 1 59 ALA 59 119 119 ALA ALA A . n A 1 60 ALA 60 120 120 ALA ALA A . n A 1 61 LEU 61 121 121 LEU LEU A . n A 1 62 GLU 62 122 122 GLU GLU A . n A 1 63 SER 63 123 123 SER SER A . n A 1 64 ASN 64 124 124 ASN ASN A . n A 1 65 TRP 65 125 125 TRP TRP A . n A 1 66 GLY 66 126 126 GLY GLY A . n A 1 67 ARG 67 127 127 ARG ARG A . n A 1 68 SER 68 128 128 SER SER A . n A 1 69 GLU 69 129 129 GLU GLU A . n A 1 70 LEU 70 130 130 LEU LEU A . n A 1 71 GLY 71 131 131 GLY GLY A . n A 1 72 LYS 72 132 132 LYS LYS A . n A 1 73 ALA 73 133 133 ALA ALA A . n A 1 74 PRO 74 134 134 PRO PRO A . n A 1 75 ASN 75 135 135 ASN ASN A . n A 1 76 TYR 76 136 136 TYR TYR A . n A 1 77 ASN 77 137 137 ASN ASN A . n A 1 78 LEU 78 138 138 LEU LEU A . n A 1 79 PHE 79 139 139 PHE PHE A . n A 1 80 GLY 80 140 140 GLY GLY A . n A 1 81 ILE 81 141 141 ILE ILE A . n A 1 82 LYS 82 142 142 LYS LYS A . n A 1 83 GLY 83 143 143 GLY GLY A . n A 1 84 SER 84 144 144 SER SER A . n A 1 85 TYR 85 145 145 TYR TYR A . n A 1 86 ASN 86 146 146 ASN ASN A . n A 1 87 GLY 87 147 147 GLY GLY A . n A 1 88 LYS 88 148 148 LYS LYS A . n A 1 89 SER 89 149 149 SER SER A . n A 1 90 VAL 90 150 150 VAL VAL A . n A 1 91 THR 91 151 151 THR THR A . n A 1 92 MET 92 152 152 MET MET A . n A 1 93 LYS 93 153 153 LYS LYS A . n A 1 94 THR 94 154 154 THR THR A . n A 1 95 TRP 95 155 155 TRP TRP A . n A 1 96 GLU 96 156 156 GLU GLU A . n A 1 97 TYR 97 157 157 TYR TYR A . n A 1 98 SER 98 158 158 SER SER A . n A 1 99 ASP 99 159 159 ASP ASP A . n A 1 100 SER 100 160 160 SER SER A . n A 1 101 LYS 101 161 161 LYS LYS A . n A 1 102 GLY 102 162 162 GLY GLY A . n A 1 103 TRP 103 163 163 TRP TRP A . n A 1 104 TYR 104 164 164 TYR TYR A . n A 1 105 GLN 105 165 165 GLN GLN A . n A 1 106 ILE 106 166 166 ILE ILE A . n A 1 107 ASN 107 167 167 ASN ASN A . n A 1 108 ALA 108 168 168 ALA ALA A . n A 1 109 ASN 109 169 169 ASN ASN A . n A 1 110 PHE 110 170 170 PHE PHE A . n A 1 111 ALA 111 171 171 ALA ALA A . n A 1 112 LYS 112 172 172 LYS LYS A . n A 1 113 TYR 113 173 173 TYR TYR A . n A 1 114 PRO 114 174 174 PRO PRO A . n A 1 115 SER 115 175 175 SER SER A . n A 1 116 HIS 116 176 176 HIS HIS A . n A 1 117 LYS 117 177 177 LYS LYS A . n A 1 118 GLU 118 178 178 GLU GLU A . n A 1 119 SER 119 179 179 SER SER A . n A 1 120 LEU 120 180 180 LEU LEU A . n A 1 121 GLU 121 181 181 GLU GLU A . n A 1 122 ASP 122 182 182 ASP ASP A . n A 1 123 ASN 123 183 183 ASN ASN A . n A 1 124 ALA 124 184 184 ALA ALA A . n A 1 125 LYS 125 185 185 LYS LYS A . n A 1 126 LYS 126 186 186 LYS LYS A . n A 1 127 LEU 127 187 187 LEU LEU A . n A 1 128 ARG 128 188 188 ARG ARG A . n A 1 129 ASN 129 189 189 ASN ASN A . n A 1 130 GLY 130 190 190 GLY GLY A . n A 1 131 PRO 131 191 191 PRO PRO A . n A 1 132 SER 132 192 192 SER SER A . n A 1 133 TRP 133 193 193 TRP TRP A . n A 1 134 ASP 134 194 194 ASP ASP A . n A 1 135 SER 135 195 195 SER SER A . n A 1 136 SER 136 196 196 SER SER A . n A 1 137 TYR 137 197 197 TYR TYR A . n A 1 138 TYR 138 198 198 TYR TYR A . n A 1 139 LYS 139 199 199 LYS LYS A . n A 1 140 GLY 140 200 200 GLY GLY A . n A 1 141 ALA 141 201 201 ALA ALA A . n A 1 142 TRP 142 202 202 TRP TRP A . n A 1 143 ARG 143 203 203 ARG ARG A . n A 1 144 GLU 144 204 204 GLU GLU A . n A 1 145 ASN 145 205 205 ASN ASN A . n A 1 146 ALA 146 206 206 ALA ALA A . n A 1 147 LYS 147 207 207 LYS LYS A . n A 1 148 THR 148 208 208 THR THR A . n A 1 149 TYR 149 209 209 TYR TYR A . n A 1 150 LYS 150 210 210 LYS LYS A . n A 1 151 ASP 151 211 211 ASP ASP A . n A 1 152 ALA 152 212 212 ALA ALA A . n A 1 153 THR 153 213 213 THR THR A . n A 1 154 ALA 154 214 214 ALA ALA A . n A 1 155 TRP 155 215 215 TRP TRP A . n A 1 156 LEU 156 216 216 LEU LEU A . n A 1 157 GLN 157 217 217 GLN GLN A . n A 1 158 GLY 158 218 218 GLY GLY A . n A 1 159 ARG 159 219 219 ARG ARG A . n A 1 160 TYR 160 220 220 TYR TYR A . n A 1 161 ALA 161 221 221 ALA ALA A . n A 1 162 THR 162 222 222 THR THR A . n A 1 163 ASP 163 223 223 ASP ASP A . n A 1 164 ASN 164 224 224 ASN ASN A . n A 1 165 THR 165 225 225 THR THR A . n A 1 166 TYR 166 226 226 TYR TYR A . n A 1 167 ALA 167 227 227 ALA ALA A . n A 1 168 SER 168 228 228 SER SER A . n A 1 169 LYS 169 229 229 LYS LYS A . n A 1 170 LEU 170 230 230 LEU LEU A . n A 1 171 ASN 171 231 231 ASN ASN A . n A 1 172 THR 172 232 232 THR THR A . n A 1 173 LEU 173 233 233 LEU LEU A . n A 1 174 ILE 174 234 234 ILE ILE A . n A 1 175 SER 175 235 235 SER SER A . n A 1 176 SER 176 236 236 SER SER A . n A 1 177 TYR 177 237 237 TYR TYR A . n A 1 178 ASN 178 238 238 ASN ASN A . n A 1 179 LEU 179 239 239 LEU LEU A . n A 1 180 THR 180 240 240 THR THR A . n A 1 181 GLN 181 241 241 GLN GLN A . n A 1 182 TYR 182 242 242 TYR TYR A . n A 1 183 ASP 183 243 243 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 1 SO4 SO4 A . C 3 HOH 1 2 2 HOH HOH A . C 3 HOH 2 3 3 HOH HOH A . C 3 HOH 3 4 4 HOH HOH A . C 3 HOH 4 5 5 HOH HOH A . C 3 HOH 5 6 6 HOH HOH A . C 3 HOH 6 7 7 HOH HOH A . C 3 HOH 7 8 8 HOH HOH A . C 3 HOH 8 9 9 HOH HOH A . C 3 HOH 9 10 10 HOH HOH A . C 3 HOH 10 11 11 HOH HOH A . C 3 HOH 11 12 12 HOH HOH A . C 3 HOH 12 13 13 HOH HOH A . C 3 HOH 13 14 14 HOH HOH A . C 3 HOH 14 15 15 HOH HOH A . C 3 HOH 15 16 16 HOH HOH A . C 3 HOH 16 17 17 HOH HOH A . C 3 HOH 17 18 18 HOH HOH A . C 3 HOH 18 19 19 HOH HOH A . C 3 HOH 19 20 20 HOH HOH A . C 3 HOH 20 21 21 HOH HOH A . C 3 HOH 21 22 22 HOH HOH A . C 3 HOH 22 23 23 HOH HOH A . C 3 HOH 23 24 24 HOH HOH A . C 3 HOH 24 25 25 HOH HOH A . C 3 HOH 25 26 26 HOH HOH A . C 3 HOH 26 27 27 HOH HOH A . C 3 HOH 27 28 28 HOH HOH A . C 3 HOH 28 29 29 HOH HOH A . C 3 HOH 29 30 30 HOH HOH A . C 3 HOH 30 31 31 HOH HOH A . C 3 HOH 31 32 32 HOH HOH A . C 3 HOH 32 33 33 HOH HOH A . C 3 HOH 33 34 34 HOH HOH A . C 3 HOH 34 35 35 HOH HOH A . C 3 HOH 35 36 36 HOH HOH A . C 3 HOH 36 37 37 HOH HOH A . C 3 HOH 37 38 38 HOH HOH A . C 3 HOH 38 39 39 HOH HOH A . C 3 HOH 39 40 40 HOH HOH A . C 3 HOH 40 41 41 HOH HOH A . C 3 HOH 41 42 42 HOH HOH A . C 3 HOH 42 43 43 HOH HOH A . C 3 HOH 43 44 44 HOH HOH A . C 3 HOH 44 45 45 HOH HOH A . C 3 HOH 45 46 46 HOH HOH A . C 3 HOH 46 47 47 HOH HOH A . C 3 HOH 47 48 48 HOH HOH A . C 3 HOH 48 72 72 HOH HOH A . C 3 HOH 49 73 73 HOH HOH A . C 3 HOH 50 74 74 HOH HOH A . C 3 HOH 51 75 75 HOH HOH A . C 3 HOH 52 76 76 HOH HOH A . C 3 HOH 53 77 77 HOH HOH A . C 3 HOH 54 78 78 HOH HOH A . C 3 HOH 55 79 79 HOH HOH A . C 3 HOH 56 80 80 HOH HOH A . C 3 HOH 57 81 81 HOH HOH A . C 3 HOH 58 82 82 HOH HOH A . C 3 HOH 59 83 83 HOH HOH A . C 3 HOH 60 244 49 HOH HOH A . C 3 HOH 61 245 50 HOH HOH A . C 3 HOH 62 246 51 HOH HOH A . C 3 HOH 63 247 52 HOH HOH A . C 3 HOH 64 248 53 HOH HOH A . C 3 HOH 65 249 54 HOH HOH A . C 3 HOH 66 250 55 HOH HOH A . C 3 HOH 67 251 56 HOH HOH A . C 3 HOH 68 252 57 HOH HOH A . C 3 HOH 69 253 58 HOH HOH A . C 3 HOH 70 254 59 HOH HOH A . C 3 HOH 71 255 60 HOH HOH A . C 3 HOH 72 256 61 HOH HOH A . C 3 HOH 73 257 62 HOH HOH A . C 3 HOH 74 258 63 HOH HOH A . C 3 HOH 75 259 64 HOH HOH A . C 3 HOH 76 260 65 HOH HOH A . C 3 HOH 77 261 66 HOH HOH A . C 3 HOH 78 262 67 HOH HOH A . C 3 HOH 79 263 68 HOH HOH A . C 3 HOH 80 264 69 HOH HOH A . C 3 HOH 81 265 70 HOH HOH A . C 3 HOH 82 266 71 HOH HOH A . C 3 HOH 83 267 84 HOH HOH A . C 3 HOH 84 268 85 HOH HOH A . C 3 HOH 85 269 86 HOH HOH A . C 3 HOH 86 270 87 HOH HOH A . C 3 HOH 87 271 88 HOH HOH A . C 3 HOH 88 272 89 HOH HOH A . C 3 HOH 89 273 90 HOH HOH A . C 3 HOH 90 274 91 HOH HOH A . C 3 HOH 91 275 92 HOH HOH A . C 3 HOH 92 276 93 HOH HOH A . C 3 HOH 93 277 94 HOH HOH A . C 3 HOH 94 278 95 HOH HOH A . C 3 HOH 95 279 96 HOH HOH A . C 3 HOH 96 280 97 HOH HOH A . C 3 HOH 97 281 98 HOH HOH A . C 3 HOH 98 282 99 HOH HOH A . C 3 HOH 99 283 100 HOH HOH A . C 3 HOH 100 284 101 HOH HOH A . C 3 HOH 101 285 102 HOH HOH A . C 3 HOH 102 286 103 HOH HOH A . C 3 HOH 103 287 104 HOH HOH A . C 3 HOH 104 288 105 HOH HOH A . C 3 HOH 105 289 106 HOH HOH A . C 3 HOH 106 290 107 HOH HOH A . C 3 HOH 107 291 108 HOH HOH A . C 3 HOH 108 292 109 HOH HOH A . C 3 HOH 109 293 110 HOH HOH A . C 3 HOH 110 294 111 HOH HOH A . C 3 HOH 111 295 112 HOH HOH A . C 3 HOH 112 296 113 HOH HOH A . C 3 HOH 113 297 114 HOH HOH A . C 3 HOH 114 298 115 HOH HOH A . C 3 HOH 115 299 116 HOH HOH A . C 3 HOH 116 300 117 HOH HOH A . C 3 HOH 117 301 118 HOH HOH A . C 3 HOH 118 302 119 HOH HOH A . C 3 HOH 119 303 120 HOH HOH A . C 3 HOH 120 304 121 HOH HOH A . C 3 HOH 121 305 122 HOH HOH A . C 3 HOH 122 306 123 HOH HOH A . C 3 HOH 123 307 124 HOH HOH A . C 3 HOH 124 308 125 HOH HOH A . C 3 HOH 125 309 126 HOH HOH A . C 3 HOH 126 310 127 HOH HOH A . C 3 HOH 127 311 128 HOH HOH A . C 3 HOH 128 312 129 HOH HOH A . C 3 HOH 129 313 130 HOH HOH A . C 3 HOH 130 314 131 HOH HOH A . C 3 HOH 131 315 132 HOH HOH A . C 3 HOH 132 316 133 HOH HOH A . C 3 HOH 133 317 134 HOH HOH A . C 3 HOH 134 318 135 HOH HOH A . C 3 HOH 135 319 136 HOH HOH A . C 3 HOH 136 320 137 HOH HOH A . C 3 HOH 137 321 138 HOH HOH A . C 3 HOH 138 322 139 HOH HOH A . C 3 HOH 139 323 140 HOH HOH A . C 3 HOH 140 324 141 HOH HOH A . C 3 HOH 141 325 142 HOH HOH A . C 3 HOH 142 326 143 HOH HOH A . C 3 HOH 143 327 144 HOH HOH A . C 3 HOH 144 328 145 HOH HOH A . C 3 HOH 145 329 146 HOH HOH A . C 3 HOH 146 330 147 HOH HOH A . C 3 HOH 147 331 148 HOH HOH A . C 3 HOH 148 332 149 HOH HOH A . C 3 HOH 149 333 150 HOH HOH A . C 3 HOH 150 334 151 HOH HOH A . C 3 HOH 151 335 152 HOH HOH A . C 3 HOH 152 336 153 HOH HOH A . C 3 HOH 153 337 154 HOH HOH A . C 3 HOH 154 338 155 HOH HOH A . C 3 HOH 155 339 156 HOH HOH A . C 3 HOH 156 340 157 HOH HOH A . C 3 HOH 157 341 158 HOH HOH A . C 3 HOH 158 342 159 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS monomeric 1 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2,3,4 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 11240 ? 2 MORE -122 ? 2 'SSA (A^2)' 31750 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1.0000000000 0.0000000000 0.0000000000 -133.5000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1.0000000000 0.0000000000 0.0000000000 -133.5000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-07 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-06-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Source and taxonomy' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category entity_src_gen # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -65.9846 _pdbx_refine_tls.origin_y 14.1224 _pdbx_refine_tls.origin_z 16.6688 _pdbx_refine_tls.T[1][1] 0.2692 _pdbx_refine_tls.T[2][2] 0.2549 _pdbx_refine_tls.T[3][3] 0.2451 _pdbx_refine_tls.T[1][2] -0.0015 _pdbx_refine_tls.T[1][3] -0.0075 _pdbx_refine_tls.T[2][3] -0.0170 _pdbx_refine_tls.L[1][1] 0.4274 _pdbx_refine_tls.L[2][2] 1.2405 _pdbx_refine_tls.L[3][3] 0.7002 _pdbx_refine_tls.L[1][2] -0.0850 _pdbx_refine_tls.L[1][3] 0.0182 _pdbx_refine_tls.L[2][3] -0.3142 _pdbx_refine_tls.S[1][1] -0.0125 _pdbx_refine_tls.S[1][2] -0.0601 _pdbx_refine_tls.S[1][3] 0.0756 _pdbx_refine_tls.S[2][1] 0.1674 _pdbx_refine_tls.S[2][2] 0.0022 _pdbx_refine_tls.S[2][3] -0.1069 _pdbx_refine_tls.S[3][1] -0.1846 _pdbx_refine_tls.S[3][2] 0.0321 _pdbx_refine_tls.S[3][3] 0.0079 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 55 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 243 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'chain A' _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3FI7 _pdbx_entry_details.sequence_details 'FUSION PROTEIN OF NON-PHYSIOLOGICAL RESIDUES (GAM), LMO1076 52-71, LMO1076 84-243. LOOP RESIDUES 72-83 WERE DELETED BY MUTAGENESIS' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 194 ? ? -160.36 97.33 2 1 ASP A 223 ? ? 177.78 106.36 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 49 ? A GLY 1 2 1 Y 1 A ALA 50 ? A ALA 2 3 1 Y 1 A MET 51 ? A MET 3 4 1 Y 1 A GLU 52 ? A GLU 4 5 1 Y 1 A SER 53 ? A SER 5 6 1 Y 1 A GLU 54 ? A GLU 6 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #