HEADER TRANSFERASE 11-DEC-08 3FI8 TITLE CRYSTAL STRUCTURE OF CHOLINE KINASE FROM PLASMODIUM FALCIPARUM, TITLE 2 PF14_0020 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINE KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PF14_0020; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHOLINE KINASE, MALARIA, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,J.C.PIZARRO,J.D.ARTZ,M.F.AMAYA,T.XIAO,J.LEW,G.WASNEY, AUTHOR 2 G.SENESTERRA,I.KOZIERADZKI,D.COSSAR,M.VEDADI,M.SCHAPIRA,A.BOCHKAREV, AUTHOR 3 C.H.ARROWSMITH,C.BOUNTRA,J.WEIGELT,A.M.EDWARDS,R.HUI,T.HILLS, AUTHOR 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 21-FEB-24 3FI8 1 REMARK LINK REVDAT 3 01-NOV-17 3FI8 1 REMARK REVDAT 2 13-JUL-11 3FI8 1 VERSN REVDAT 1 10-FEB-09 3FI8 0 JRNL AUTH A.K.WERNIMONT,J.C.PIZARRO,J.D.ARTZ,M.F.AMAYA,T.XIAO,J.LEW, JRNL AUTH 2 G.WASNEY,G.SENESTERRA,I.KOZIERADZKI,D.COSSAR,M.VEDADI, JRNL AUTH 3 M.SCHAPIRA,A.BOCHKAREV,C.H.ARROWSMITH,C.BOUNTRA,J.WEIGELT, JRNL AUTH 4 A.M.EDWARDS,R.HUI,T.HILLS JRNL TITL CRYSTAL STRUCTURE OF CHOLINE KINASE FROM PLASMODIUM JRNL TITL 2 FALCIPARUM, PF14_0020 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 784 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1050 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2790 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.48000 REMARK 3 B22 (A**2) : -1.90000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.439 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.275 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.094 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2931 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3975 ; 1.393 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 5.712 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;36.853 ;23.958 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 503 ;17.295 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;24.334 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 435 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2193 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1390 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2037 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 170 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 70 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.197 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1762 ; 0.629 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2763 ; 1.110 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1364 ; 1.815 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1210 ; 2.758 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9347 1.7741 29.6798 REMARK 3 T TENSOR REMARK 3 T11: 0.0070 T22: 0.0221 REMARK 3 T33: 0.1883 T12: 0.0046 REMARK 3 T13: 0.0194 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 5.2032 L22: 6.2914 REMARK 3 L33: 5.8424 L12: 0.3168 REMARK 3 L13: 0.9951 L23: -2.4590 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0619 S13: 0.5443 REMARK 3 S21: 0.2892 S22: 0.1505 S23: 0.2700 REMARK 3 S31: -0.5233 S32: -0.2302 S33: -0.1671 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0218 -1.8990 24.7482 REMARK 3 T TENSOR REMARK 3 T11: -0.0337 T22: 0.0001 REMARK 3 T33: -0.0403 T12: 0.0146 REMARK 3 T13: -0.0195 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 4.0469 L22: 1.1019 REMARK 3 L33: 0.4940 L12: 1.0932 REMARK 3 L13: -0.9841 L23: -0.7191 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: -0.0327 S13: -0.1298 REMARK 3 S21: 0.0504 S22: -0.0416 S23: 0.1674 REMARK 3 S31: 0.0002 S32: -0.0520 S33: -0.0065 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 218 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2362 -3.3032 0.2734 REMARK 3 T TENSOR REMARK 3 T11: 0.2920 T22: 0.1199 REMARK 3 T33: 0.1062 T12: 0.0195 REMARK 3 T13: -0.0680 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.7565 L22: 1.9490 REMARK 3 L33: 0.3970 L12: -0.8470 REMARK 3 L13: 0.0064 L23: -0.6374 REMARK 3 S TENSOR REMARK 3 S11: 0.2713 S12: 0.2410 S13: -0.2135 REMARK 3 S21: -0.6117 S22: -0.0821 S23: 0.3339 REMARK 3 S31: 0.1612 S32: -0.0104 S33: -0.1892 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 273 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1552 -1.8855 17.7068 REMARK 3 T TENSOR REMARK 3 T11: -0.0282 T22: -0.0563 REMARK 3 T33: -0.0120 T12: -0.0367 REMARK 3 T13: -0.0199 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 2.4742 L22: 5.7092 REMARK 3 L33: 4.0703 L12: -1.8599 REMARK 3 L13: -1.4076 L23: 1.5355 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.2033 S13: 0.0900 REMARK 3 S21: 0.0869 S22: 0.1493 S23: 0.1406 REMARK 3 S31: -0.1033 S32: 0.1084 S33: -0.1575 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 313 A 432 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8511 7.0942 10.2165 REMARK 3 T TENSOR REMARK 3 T11: -0.0353 T22: -0.0733 REMARK 3 T33: -0.0891 T12: -0.0146 REMARK 3 T13: 0.0319 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.6430 L22: 2.8570 REMARK 3 L33: 1.9965 L12: -0.9116 REMARK 3 L13: 0.7094 L23: -0.6106 REMARK 3 S TENSOR REMARK 3 S11: 0.1150 S12: 0.2000 S13: 0.1050 REMARK 3 S21: -0.4336 S22: -0.1028 S23: -0.1287 REMARK 3 S31: 0.0648 S32: 0.1306 S33: -0.0121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97951 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16405 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : 0.14000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.5380 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80300 REMARK 200 R SYM FOR SHELL (I) : 0.80300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.2 M NACL, 0.1 M HEPES REMARK 280 PH 7.5, 5% MPD, 2 MM PHOSPHOETHANOLAMINE, 2 MM ADP, 2 MM TCEP, 4 REMARK 280 MM MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.19000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.77850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.27800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.77850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.19000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.27800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 145 REMARK 465 LYS A 146 REMARK 465 ASP A 147 REMARK 465 VAL A 148 REMARK 465 ASP A 149 REMARK 465 ALA A 150 REMARK 465 LEU A 151 REMARK 465 TYR A 152 REMARK 465 ASN A 153 REMARK 465 SER A 369 REMARK 465 LYS A 404 REMARK 465 SER A 405 REMARK 465 TYR A 406 REMARK 465 ASN A 407 REMARK 465 GLU A 408 REMARK 465 ASN A 433 REMARK 465 ILE A 434 REMARK 465 ILE A 435 REMARK 465 LYS A 436 REMARK 465 ASP A 437 REMARK 465 TYR A 438 REMARK 465 ASP A 439 REMARK 465 ASP A 440 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 79 CB OG REMARK 470 LEU A 85 CG CD1 CD2 REMARK 470 ASP A 104 CG OD1 OD2 REMARK 470 LEU A 112 CG CD1 CD2 REMARK 470 LEU A 115 CG CD1 CD2 REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 ASP A 127 CG OD1 OD2 REMARK 470 ILE A 130 CG1 CG2 CD1 REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 249 CG OD1 OD2 REMARK 470 LYS A 250 CD CE NZ REMARK 470 LEU A 253 CG CD1 CD2 REMARK 470 ASP A 254 CG OD1 OD2 REMARK 470 LYS A 264 CD CE NZ REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 ASP A 372 CG OD1 OD2 REMARK 470 LYS A 420 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 324 O HOH A 35 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 314 CA - CB - CG ANGL. DEV. = 17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 97 -12.97 75.83 REMARK 500 LYS A 125 12.40 -62.05 REMARK 500 GLU A 126 -44.57 70.51 REMARK 500 ASP A 288 47.88 -144.85 REMARK 500 ASP A 305 80.73 68.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 441 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 1 O3A REMARK 620 2 HOH A 19 O 84.3 REMARK 620 3 ASN A 293 OD1 132.6 75.5 REMARK 620 4 ASP A 305 OD2 82.6 153.5 96.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 441 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OPE A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OPE A 442 DBREF 3FI8 A 79 440 UNP Q8IM71 Q8IM71_PLAF7 79 440 SEQRES 1 A 362 SER LYS LEU THR ASP PRO LEU TYR ILE LYS LYS ILE CYS SEQRES 2 A 362 LEU GLU LYS VAL HIS ASP TRP SER ARG CYS ASN GLU ASP SEQRES 3 A 362 ASP VAL CYS VAL ASN GLN ILE LEU SER GLY LEU THR ASN SEQRES 4 A 362 GLN LEU PHE GLU VAL SER ILE LYS GLU ASP THR ALA ILE SEQRES 5 A 362 GLU TYR ARG ILE THR ARG ARG HIS VAL LEU PHE ARG ILE SEQRES 6 A 362 TYR GLY LYS ASP VAL ASP ALA LEU TYR ASN PRO LEU SER SEQRES 7 A 362 GLU PHE GLU VAL TYR LYS THR MET SER LYS TYR ARG ILE SEQRES 8 A 362 ALA PRO LEU LEU LEU ASN THR PHE ASP GLY GLY ARG ILE SEQRES 9 A 362 GLU GLU TRP LEU TYR GLY ASP PRO LEU SER ILE ASP ASP SEQRES 10 A 362 LEU LYS ASN LYS SER ILE LEU VAL GLY ILE ALA ASN VAL SEQRES 11 A 362 LEU GLY LYS PHE HIS THR LEU SER ARG LYS ARG HIS LEU SEQRES 12 A 362 PRO GLU HIS TRP ASP LYS THR PRO CYS VAL PHE LYS MET SEQRES 13 A 362 MET ASP ARG TRP ARG LEU ALA VAL SER ASN TYR LYS ASN SEQRES 14 A 362 LEU ASP LYS VAL THR LEU ASP ILE ASN LYS TYR ILE GLN SEQRES 15 A 362 GLU SER HIS LYS PHE LEU LYS PHE ILE LYS ILE TYR THR SEQRES 16 A 362 GLN ILE GLU ASN ILE ALA ASN ASP ILE VAL PHE CYS HIS SEQRES 17 A 362 ASN ASP LEU GLN GLU ASN ASN ILE MET ASN THR ASN LYS SEQRES 18 A 362 CYS LEU ARG LEU ILE ASP PHE GLU TYR SER GLY TYR ASN SEQRES 19 A 362 PHE LEU SER ALA ASP ILE ALA ASN PHE PHE ILE GLU THR SEQRES 20 A 362 THR ILE ASP TYR SER TYR ASN ALA TYR PRO PHE PHE ILE SEQRES 21 A 362 ILE ASN LYS LYS ASN TYR ILE SER TYR GLU SER ARG ILE SEQRES 22 A 362 LEU PHE VAL THR THR TYR LEU SER LYS TYR LEU ASP ASP SEQRES 23 A 362 SER THR ALA ALA SER ASP GLN ASP ILE ILE ASP GLN PHE SEQRES 24 A 362 LEU GLU ALA ILE GLU VAL GLN ALA LEU GLY LEU HIS LEU SEQRES 25 A 362 ILE TRP ALA PHE TRP SER ILE ILE ARG GLY TYR GLN THR SEQRES 26 A 362 LYS SER TYR ASN GLU PHE ASP PHE PHE LEU TYR ALA LYS SEQRES 27 A 362 GLU ARG LEU LYS MET TYR ASP GLU GLN LYS GLN TYR LEU SEQRES 28 A 362 MET SER LYS ASN ILE ILE LYS ASP TYR ASP ASP HET ADP A 1 27 HET MG A 441 1 HET OPE A 603 8 HET OPE A 442 8 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM OPE PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER HETSYN OPE COLAMINE PHOSPHORIC ACID FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 OPE 2(C2 H8 N O4 P) FORMUL 6 HOH *102(H2 O) HELIX 1 1 THR A 82 VAL A 95 1 14 HELIX 2 2 ASP A 97 CYS A 101 5 5 HELIX 3 3 GLU A 126 TYR A 132 1 7 HELIX 4 4 SER A 156 TYR A 167 1 12 HELIX 5 5 ASP A 194 LYS A 197 5 4 HELIX 6 6 ASN A 198 HIS A 213 1 16 HELIX 7 7 THR A 214 ARG A 219 1 6 HELIX 8 8 PRO A 229 ASN A 244 1 16 HELIX 9 9 ASN A 247 VAL A 251 5 5 HELIX 10 10 ASP A 254 THR A 273 1 20 HELIX 11 11 ASN A 277 ASN A 280 5 4 HELIX 12 12 GLN A 290 ASN A 292 5 3 HELIX 13 13 LEU A 314 THR A 325 1 12 HELIX 14 14 LYS A 341 TYR A 344 5 4 HELIX 15 15 SER A 346 LEU A 362 1 17 HELIX 16 16 ASP A 372 THR A 403 1 32 HELIX 17 17 ASP A 410 LYS A 432 1 23 SHEET 1 A 5 VAL A 106 ILE A 111 0 SHEET 2 A 5 GLN A 118 ILE A 124 -1 O SER A 123 N CYS A 107 SHEET 3 A 5 HIS A 138 ILE A 143 -1 O ILE A 143 N GLN A 118 SHEET 4 A 5 GLY A 180 GLU A 184 -1 O ARG A 181 N ARG A 142 SHEET 5 A 5 LEU A 173 PHE A 177 -1 N ASN A 175 O ILE A 182 SHEET 1 B 3 ASP A 189 PRO A 190 0 SHEET 2 B 3 ILE A 294 THR A 297 -1 O ASN A 296 N ASP A 189 SHEET 3 B 3 CYS A 300 LEU A 303 -1 O ARG A 302 N MET A 295 SHEET 1 C 2 ILE A 282 CYS A 285 0 SHEET 2 C 2 GLY A 310 PHE A 313 -1 O ASN A 312 N VAL A 283 SHEET 1 D 2 ILE A 327 ASP A 328 0 SHEET 2 D 2 ILE A 338 ILE A 339 -1 O ILE A 338 N ASP A 328 LINK O3A ADP A 1 MG MG A 441 1555 1555 2.86 LINK O HOH A 19 MG MG A 441 1555 1555 2.18 LINK OD1 ASN A 293 MG MG A 441 1555 1555 2.33 LINK OD2 ASP A 305 MG MG A 441 1555 1555 2.11 CISPEP 1 TYR A 334 PRO A 335 0 2.86 SITE 1 AC1 18 HOH A 42 SER A 113 GLY A 114 ASN A 117 SITE 2 AC1 18 LEU A 119 LEU A 140 ARG A 142 PRO A 171 SITE 3 AC1 18 GLU A 184 TRP A 185 LEU A 186 PRO A 190 SITE 4 AC1 18 ASN A 292 ASN A 293 ILE A 304 ASP A 305 SITE 5 AC1 18 GLU A 307 MG A 441 SITE 1 AC2 4 ADP A 1 HOH A 19 ASN A 293 ASP A 305 SITE 1 AC3 7 HOH A 48 ASP A 288 GLN A 290 TYR A 329 SITE 2 AC3 7 TRP A 395 TYR A 414 HOH A 456 SITE 1 AC4 4 HOH A 51 HIS A 389 GLN A 425 TYR A 428 CRYST1 58.380 64.556 91.557 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010922 0.00000