data_3FK8 # _entry.id 3FK8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3FK8 RCSB RCSB050691 WWPDB D_1000050691 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC61824.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FK8 _pdbx_database_status.recvd_initial_deposition_date 2008-12-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Sather, A.' 2 'Shackelford, G.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The crystal structure of disulphide isomerase from Xylella fastidiosa Temecula1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Sather, A.' 2 primary 'Shackelford, G.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3FK8 _cell.length_a 35.325 _cell.length_b 50.236 _cell.length_c 65.858 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FK8 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Disulphide isomerase' 14777.548 1 ? ? ? ? 2 non-polymer syn 'FORMIC ACID' 46.025 4 ? ? ? ? 3 water nat water 18.015 153 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNALNLPYDEHADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLEL SQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARK(MSE)SDQGIYDFFAKITE ; _entity_poly.pdbx_seq_one_letter_code_can ;SNALNLPYDEHADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLEL SQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKITE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC61824.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 LEU n 1 5 ASN n 1 6 LEU n 1 7 PRO n 1 8 TYR n 1 9 ASP n 1 10 GLU n 1 11 HIS n 1 12 ALA n 1 13 ASP n 1 14 ALA n 1 15 TRP n 1 16 THR n 1 17 GLN n 1 18 VAL n 1 19 LYS n 1 20 LYS n 1 21 ALA n 1 22 LEU n 1 23 ALA n 1 24 ALA n 1 25 GLY n 1 26 LYS n 1 27 ARG n 1 28 THR n 1 29 HIS n 1 30 LYS n 1 31 PRO n 1 32 THR n 1 33 LEU n 1 34 LEU n 1 35 VAL n 1 36 PHE n 1 37 GLY n 1 38 ALA n 1 39 ASN n 1 40 TRP n 1 41 CYS n 1 42 THR n 1 43 ASP n 1 44 CYS n 1 45 ARG n 1 46 ALA n 1 47 LEU n 1 48 ASP n 1 49 LYS n 1 50 SER n 1 51 LEU n 1 52 ARG n 1 53 ASN n 1 54 GLN n 1 55 LYS n 1 56 ASN n 1 57 THR n 1 58 ALA n 1 59 LEU n 1 60 ILE n 1 61 ALA n 1 62 LYS n 1 63 HIS n 1 64 PHE n 1 65 GLU n 1 66 VAL n 1 67 VAL n 1 68 LYS n 1 69 ILE n 1 70 ASP n 1 71 VAL n 1 72 GLY n 1 73 ASN n 1 74 PHE n 1 75 ASP n 1 76 ARG n 1 77 ASN n 1 78 LEU n 1 79 GLU n 1 80 LEU n 1 81 SER n 1 82 GLN n 1 83 ALA n 1 84 TYR n 1 85 GLY n 1 86 ASP n 1 87 PRO n 1 88 ILE n 1 89 GLN n 1 90 ASP n 1 91 GLY n 1 92 ILE n 1 93 PRO n 1 94 ALA n 1 95 VAL n 1 96 VAL n 1 97 VAL n 1 98 VAL n 1 99 ASN n 1 100 SER n 1 101 ASP n 1 102 GLY n 1 103 LYS n 1 104 VAL n 1 105 ARG n 1 106 TYR n 1 107 THR n 1 108 THR n 1 109 LYS n 1 110 GLY n 1 111 GLY n 1 112 GLU n 1 113 LEU n 1 114 ALA n 1 115 ASN n 1 116 ALA n 1 117 ARG n 1 118 LYS n 1 119 MSE n 1 120 SER n 1 121 ASP n 1 122 GLN n 1 123 GLY n 1 124 ILE n 1 125 TYR n 1 126 ASP n 1 127 PHE n 1 128 PHE n 1 129 ALA n 1 130 LYS n 1 131 ILE n 1 132 THR n 1 133 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PD_1033, Xylella fastidiosa' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Temecula1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Xylella fastidiosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 183190 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q87CN2_XYLFT _struct_ref.pdbx_db_accession Q87CN2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LNLPYDEHADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQA YGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKITE ; _struct_ref.pdbx_align_begin 19 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FK8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 133 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q87CN2 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 148 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 19 _struct_ref_seq.pdbx_auth_seq_align_end 148 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FK8 SER A 1 ? UNP Q87CN2 ? ? 'expression tag' 16 1 1 3FK8 ASN A 2 ? UNP Q87CN2 ? ? 'expression tag' 17 2 1 3FK8 ALA A 3 ? UNP Q87CN2 ? ? 'expression tag' 18 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3FK8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details ;0.1M Tris, 0.2M Trimethylamine N-oxide, 20% PEG MME 2000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-10-23 _diffrn_detector.details Mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97942 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97942 # _reflns.entry_id 3FK8 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 27.54 _reflns.d_resolution_high 1.30 _reflns.number_obs 29212 _reflns.number_all 29212 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 32.6 _reflns.B_iso_Wilson_estimate 15.2 _reflns.pdbx_redundancy 4.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.32 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.765 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.76 _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1426 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3FK8 _refine.ls_number_reflns_obs 27672 _refine.ls_number_reflns_all 27672 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.54 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 99.24 _refine.ls_R_factor_obs 0.15543 _refine.ls_R_factor_all 0.15543 _refine.ls_R_factor_R_work 0.15421 _refine.ls_R_factor_R_free 0.17916 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1486 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.963 _refine.B_iso_mean 18.859 _refine.aniso_B[1][1] -0.01 _refine.aniso_B[2][2] 0.02 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.058 _refine.pdbx_overall_ESU_R_Free 0.051 _refine.overall_SU_ML 0.030 _refine.overall_SU_B 1.555 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1023 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 153 _refine_hist.number_atoms_total 1188 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 27.54 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1157 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.591 1.956 ? 1576 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.508 5.000 ? 157 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.836 23.962 ? 53 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.727 15.000 ? 217 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.835 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.105 0.200 ? 176 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.021 ? 882 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.861 1.500 ? 712 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.767 2.000 ? 1149 'X-RAY DIFFRACTION' ? r_scbond_it 3.486 3.000 ? 445 'X-RAY DIFFRACTION' ? r_scangle_it 5.038 4.500 ? 417 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.864 3.000 ? 1157 'X-RAY DIFFRACTION' ? r_sphericity_free 7.736 3.000 ? 157 'X-RAY DIFFRACTION' ? r_sphericity_bonded 5.557 3.000 ? 1128 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.302 _refine_ls_shell.d_res_low 1.336 _refine_ls_shell.number_reflns_R_work 1930 _refine_ls_shell.R_factor_R_work 0.274 _refine_ls_shell.percent_reflns_obs 95.98 _refine_ls_shell.R_factor_R_free 0.339 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 121 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 2051 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FK8 _struct.title 'The crystal structure of disulphide isomerase from Xylella fastidiosa Temecula1' _struct.pdbx_descriptor 'Disulphide isomerase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FK8 _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text ;APC61824.1, disulphide isomerase, Xylella fastidiosa Temecula1, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, Isomerase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details 'authors state that biological unit is experimentally unknown, and is predicted to be monomeric.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 13 ? HIS A 29 ? ASP A 28 HIS A 44 1 ? 17 HELX_P HELX_P2 2 CYS A 41 ? ARG A 52 ? CYS A 56 ARG A 67 1 ? 12 HELX_P HELX_P3 3 ASN A 53 ? PHE A 64 ? ASN A 68 PHE A 79 1 ? 12 HELX_P HELX_P4 4 ASN A 77 ? TYR A 84 ? ASN A 92 TYR A 99 1 ? 8 HELX_P HELX_P5 5 GLY A 85 ? GLY A 91 ? GLY A 100 GLY A 106 5 ? 7 HELX_P HELX_P6 6 ASN A 115 ? MSE A 119 ? ASN A 130 MSE A 134 5 ? 5 HELX_P HELX_P7 7 SER A 120 ? GLU A 133 ? SER A 135 GLU A 148 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 118 C ? ? ? 1_555 A MSE 119 N ? ? A LYS 133 A MSE 134 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale ? ? A MSE 119 C ? ? ? 1_555 A SER 120 N ? ? A MSE 134 A SER 135 1_555 ? ? ? ? ? ? ? 1.315 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 92 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 107 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 93 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 108 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.95 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 65 ? ASP A 70 ? GLU A 80 ASP A 85 A 2 THR A 32 ? GLY A 37 ? THR A 47 GLY A 52 A 3 ALA A 94 ? VAL A 98 ? ALA A 109 VAL A 113 A 4 VAL A 104 ? THR A 107 ? VAL A 119 THR A 122 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 65 ? O GLU A 80 N LEU A 33 ? N LEU A 48 A 2 3 N PHE A 36 ? N PHE A 51 O ALA A 94 ? O ALA A 109 A 3 4 N VAL A 97 ? N VAL A 112 O ARG A 105 ? O ARG A 120 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE FMT A 1' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE FMT A 2' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE FMT A 3' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE FMT A 4' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 TRP A 40 ? TRP A 55 . ? 1_555 ? 2 AC1 5 CYS A 41 ? CYS A 56 . ? 1_555 ? 3 AC1 5 THR A 42 ? THR A 57 . ? 1_555 ? 4 AC1 5 ASP A 43 ? ASP A 58 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH A 189 . ? 1_555 ? 6 AC2 4 ARG A 117 ? ARG A 132 . ? 1_555 ? 7 AC2 4 LYS A 118 ? LYS A 133 . ? 1_555 ? 8 AC2 4 MSE A 119 ? MSE A 134 . ? 1_555 ? 9 AC2 4 HOH F . ? HOH A 269 . ? 3_645 ? 10 AC3 5 LYS A 49 ? LYS A 64 . ? 1_555 ? 11 AC3 5 ARG A 52 ? ARG A 67 . ? 1_555 ? 12 AC3 5 ASN A 53 ? ASN A 68 . ? 1_555 ? 13 AC3 5 HOH F . ? HOH A 254 . ? 1_555 ? 14 AC3 5 HOH F . ? HOH A 285 . ? 1_555 ? 15 AC4 5 PRO A 31 ? PRO A 46 . ? 1_555 ? 16 AC4 5 VAL A 97 ? VAL A 112 . ? 1_555 ? 17 AC4 5 ASN A 99 ? ASN A 114 . ? 1_555 ? 18 AC4 5 ARG A 105 ? ARG A 120 . ? 1_555 ? 19 AC4 5 HOH F . ? HOH A 191 . ? 1_555 ? # _database_PDB_matrix.entry_id 3FK8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FK8 _atom_sites.fract_transf_matrix[1][1] 0.028309 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019906 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015184 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 16 ? ? ? A . n A 1 2 ASN 2 17 ? ? ? A . n A 1 3 ALA 3 18 18 ALA ALA A . n A 1 4 LEU 4 19 19 LEU LEU A . n A 1 5 ASN 5 20 20 ASN ASN A . n A 1 6 LEU 6 21 21 LEU LEU A . n A 1 7 PRO 7 22 22 PRO PRO A . n A 1 8 TYR 8 23 23 TYR TYR A . n A 1 9 ASP 9 24 24 ASP ASP A . n A 1 10 GLU 10 25 25 GLU GLU A . n A 1 11 HIS 11 26 26 HIS HIS A . n A 1 12 ALA 12 27 27 ALA ALA A . n A 1 13 ASP 13 28 28 ASP ASP A . n A 1 14 ALA 14 29 29 ALA ALA A . n A 1 15 TRP 15 30 30 TRP TRP A . n A 1 16 THR 16 31 31 THR THR A . n A 1 17 GLN 17 32 32 GLN GLN A . n A 1 18 VAL 18 33 33 VAL VAL A . n A 1 19 LYS 19 34 34 LYS LYS A . n A 1 20 LYS 20 35 35 LYS LYS A . n A 1 21 ALA 21 36 36 ALA ALA A . n A 1 22 LEU 22 37 37 LEU LEU A . n A 1 23 ALA 23 38 38 ALA ALA A . n A 1 24 ALA 24 39 39 ALA ALA A . n A 1 25 GLY 25 40 40 GLY GLY A . n A 1 26 LYS 26 41 41 LYS LYS A . n A 1 27 ARG 27 42 42 ARG ARG A . n A 1 28 THR 28 43 43 THR THR A . n A 1 29 HIS 29 44 44 HIS HIS A . n A 1 30 LYS 30 45 45 LYS LYS A . n A 1 31 PRO 31 46 46 PRO PRO A . n A 1 32 THR 32 47 47 THR THR A . n A 1 33 LEU 33 48 48 LEU LEU A . n A 1 34 LEU 34 49 49 LEU LEU A . n A 1 35 VAL 35 50 50 VAL VAL A . n A 1 36 PHE 36 51 51 PHE PHE A . n A 1 37 GLY 37 52 52 GLY GLY A . n A 1 38 ALA 38 53 53 ALA ALA A . n A 1 39 ASN 39 54 54 ASN ASN A . n A 1 40 TRP 40 55 55 TRP TRP A . n A 1 41 CYS 41 56 56 CYS CYS A . n A 1 42 THR 42 57 57 THR THR A . n A 1 43 ASP 43 58 58 ASP ASP A . n A 1 44 CYS 44 59 59 CYS CYS A . n A 1 45 ARG 45 60 60 ARG ARG A . n A 1 46 ALA 46 61 61 ALA ALA A . n A 1 47 LEU 47 62 62 LEU LEU A . n A 1 48 ASP 48 63 63 ASP ASP A . n A 1 49 LYS 49 64 64 LYS LYS A . n A 1 50 SER 50 65 65 SER SER A . n A 1 51 LEU 51 66 66 LEU LEU A . n A 1 52 ARG 52 67 67 ARG ARG A . n A 1 53 ASN 53 68 68 ASN ASN A . n A 1 54 GLN 54 69 69 GLN GLN A . n A 1 55 LYS 55 70 70 LYS LYS A . n A 1 56 ASN 56 71 71 ASN ASN A . n A 1 57 THR 57 72 72 THR THR A . n A 1 58 ALA 58 73 73 ALA ALA A . n A 1 59 LEU 59 74 74 LEU LEU A . n A 1 60 ILE 60 75 75 ILE ILE A . n A 1 61 ALA 61 76 76 ALA ALA A . n A 1 62 LYS 62 77 77 LYS LYS A . n A 1 63 HIS 63 78 78 HIS HIS A . n A 1 64 PHE 64 79 79 PHE PHE A . n A 1 65 GLU 65 80 80 GLU GLU A . n A 1 66 VAL 66 81 81 VAL VAL A . n A 1 67 VAL 67 82 82 VAL VAL A . n A 1 68 LYS 68 83 83 LYS LYS A . n A 1 69 ILE 69 84 84 ILE ILE A . n A 1 70 ASP 70 85 85 ASP ASP A . n A 1 71 VAL 71 86 86 VAL VAL A . n A 1 72 GLY 72 87 87 GLY GLY A . n A 1 73 ASN 73 88 88 ASN ASN A . n A 1 74 PHE 74 89 89 PHE PHE A . n A 1 75 ASP 75 90 90 ASP ASP A . n A 1 76 ARG 76 91 91 ARG ARG A . n A 1 77 ASN 77 92 92 ASN ASN A . n A 1 78 LEU 78 93 93 LEU LEU A . n A 1 79 GLU 79 94 94 GLU GLU A . n A 1 80 LEU 80 95 95 LEU LEU A . n A 1 81 SER 81 96 96 SER SER A . n A 1 82 GLN 82 97 97 GLN GLN A . n A 1 83 ALA 83 98 98 ALA ALA A . n A 1 84 TYR 84 99 99 TYR TYR A . n A 1 85 GLY 85 100 100 GLY GLY A . n A 1 86 ASP 86 101 101 ASP ASP A . n A 1 87 PRO 87 102 102 PRO PRO A . n A 1 88 ILE 88 103 103 ILE ILE A . n A 1 89 GLN 89 104 104 GLN GLN A . n A 1 90 ASP 90 105 105 ASP ASP A . n A 1 91 GLY 91 106 106 GLY GLY A . n A 1 92 ILE 92 107 107 ILE ILE A . n A 1 93 PRO 93 108 108 PRO PRO A . n A 1 94 ALA 94 109 109 ALA ALA A . n A 1 95 VAL 95 110 110 VAL VAL A . n A 1 96 VAL 96 111 111 VAL VAL A . n A 1 97 VAL 97 112 112 VAL VAL A . n A 1 98 VAL 98 113 113 VAL VAL A . n A 1 99 ASN 99 114 114 ASN ASN A . n A 1 100 SER 100 115 115 SER SER A . n A 1 101 ASP 101 116 116 ASP ASP A . n A 1 102 GLY 102 117 117 GLY GLY A . n A 1 103 LYS 103 118 118 LYS LYS A . n A 1 104 VAL 104 119 119 VAL VAL A . n A 1 105 ARG 105 120 120 ARG ARG A . n A 1 106 TYR 106 121 121 TYR TYR A . n A 1 107 THR 107 122 122 THR THR A . n A 1 108 THR 108 123 123 THR THR A . n A 1 109 LYS 109 124 124 LYS LYS A . n A 1 110 GLY 110 125 125 GLY GLY A . n A 1 111 GLY 111 126 126 GLY GLY A . n A 1 112 GLU 112 127 127 GLU GLU A . n A 1 113 LEU 113 128 128 LEU LEU A . n A 1 114 ALA 114 129 129 ALA ALA A . n A 1 115 ASN 115 130 130 ASN ASN A . n A 1 116 ALA 116 131 131 ALA ALA A . n A 1 117 ARG 117 132 132 ARG ARG A . n A 1 118 LYS 118 133 133 LYS LYS A . n A 1 119 MSE 119 134 134 MSE MSE A . n A 1 120 SER 120 135 135 SER SER A . n A 1 121 ASP 121 136 136 ASP ASP A . n A 1 122 GLN 122 137 137 GLN GLN A . n A 1 123 GLY 123 138 138 GLY GLY A . n A 1 124 ILE 124 139 139 ILE ILE A . n A 1 125 TYR 125 140 140 TYR TYR A . n A 1 126 ASP 126 141 141 ASP ASP A . n A 1 127 PHE 127 142 142 PHE PHE A . n A 1 128 PHE 128 143 143 PHE PHE A . n A 1 129 ALA 129 144 144 ALA ALA A . n A 1 130 LYS 130 145 145 LYS LYS A . n A 1 131 ILE 131 146 146 ILE ILE A . n A 1 132 THR 132 147 147 THR THR A . n A 1 133 GLU 133 148 148 GLU GLU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 119 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 134 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-01-13 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-04-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHELXD phasing . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 RESOLVE 'model building' . ? 5 HKL-3000 phasing . ? 6 REFMAC refinement 5.5.0054 ? 7 HKL-3000 'data reduction' . ? 8 HKL-3000 'data scaling' . ? 9 DM phasing . ? 10 RESOLVE phasing . ? 11 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NZ _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 145 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 186 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 90 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -150.58 _pdbx_validate_torsion.psi 16.67 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 16 ? A SER 1 2 1 Y 1 A ASN 17 ? A ASN 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FORMIC ACID' FMT 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT 1 1 1 FMT FMT A . C 2 FMT 1 2 2 FMT FMT A . D 2 FMT 1 3 3 FMT FMT A . E 2 FMT 1 4 4 FMT FMT A . F 3 HOH 1 5 5 HOH HOH A . F 3 HOH 2 6 6 HOH HOH A . F 3 HOH 3 7 7 HOH HOH A . F 3 HOH 4 8 8 HOH HOH A . F 3 HOH 5 9 9 HOH HOH A . F 3 HOH 6 10 10 HOH HOH A . F 3 HOH 7 11 11 HOH HOH A . F 3 HOH 8 12 12 HOH HOH A . F 3 HOH 9 13 13 HOH HOH A . F 3 HOH 10 14 14 HOH HOH A . F 3 HOH 11 15 15 HOH HOH A . F 3 HOH 12 149 149 HOH HOH A . F 3 HOH 13 150 150 HOH HOH A . F 3 HOH 14 151 151 HOH HOH A . F 3 HOH 15 152 152 HOH HOH A . F 3 HOH 16 153 153 HOH HOH A . F 3 HOH 17 154 1 HOH HOH A . F 3 HOH 18 155 2 HOH HOH A . F 3 HOH 19 156 3 HOH HOH A . F 3 HOH 20 157 4 HOH HOH A . F 3 HOH 21 158 16 HOH HOH A . F 3 HOH 22 159 17 HOH HOH A . F 3 HOH 23 160 18 HOH HOH A . F 3 HOH 24 161 19 HOH HOH A . F 3 HOH 25 162 20 HOH HOH A . F 3 HOH 26 163 21 HOH HOH A . F 3 HOH 27 164 22 HOH HOH A . F 3 HOH 28 165 23 HOH HOH A . F 3 HOH 29 166 24 HOH HOH A . F 3 HOH 30 167 25 HOH HOH A . F 3 HOH 31 168 26 HOH HOH A . F 3 HOH 32 169 27 HOH HOH A . F 3 HOH 33 170 28 HOH HOH A . F 3 HOH 34 171 29 HOH HOH A . F 3 HOH 35 172 30 HOH HOH A . F 3 HOH 36 173 31 HOH HOH A . F 3 HOH 37 174 32 HOH HOH A . F 3 HOH 38 175 33 HOH HOH A . F 3 HOH 39 176 34 HOH HOH A . F 3 HOH 40 177 35 HOH HOH A . F 3 HOH 41 178 36 HOH HOH A . F 3 HOH 42 179 37 HOH HOH A . F 3 HOH 43 180 38 HOH HOH A . F 3 HOH 44 181 39 HOH HOH A . F 3 HOH 45 182 40 HOH HOH A . F 3 HOH 46 183 41 HOH HOH A . F 3 HOH 47 184 42 HOH HOH A . F 3 HOH 48 185 43 HOH HOH A . F 3 HOH 49 186 44 HOH HOH A . F 3 HOH 50 187 45 HOH HOH A . F 3 HOH 51 188 46 HOH HOH A . F 3 HOH 52 189 47 HOH HOH A . F 3 HOH 53 190 48 HOH HOH A . F 3 HOH 54 191 49 HOH HOH A . F 3 HOH 55 192 50 HOH HOH A . F 3 HOH 56 193 51 HOH HOH A . F 3 HOH 57 194 52 HOH HOH A . F 3 HOH 58 195 53 HOH HOH A . F 3 HOH 59 196 54 HOH HOH A . F 3 HOH 60 197 55 HOH HOH A . F 3 HOH 61 198 56 HOH HOH A . F 3 HOH 62 199 57 HOH HOH A . F 3 HOH 63 200 58 HOH HOH A . F 3 HOH 64 201 59 HOH HOH A . F 3 HOH 65 202 60 HOH HOH A . F 3 HOH 66 203 61 HOH HOH A . F 3 HOH 67 204 62 HOH HOH A . F 3 HOH 68 205 63 HOH HOH A . F 3 HOH 69 206 64 HOH HOH A . F 3 HOH 70 207 65 HOH HOH A . F 3 HOH 71 208 66 HOH HOH A . F 3 HOH 72 209 67 HOH HOH A . F 3 HOH 73 210 68 HOH HOH A . F 3 HOH 74 211 69 HOH HOH A . F 3 HOH 75 212 70 HOH HOH A . F 3 HOH 76 213 71 HOH HOH A . F 3 HOH 77 214 72 HOH HOH A . F 3 HOH 78 215 73 HOH HOH A . F 3 HOH 79 216 74 HOH HOH A . F 3 HOH 80 217 75 HOH HOH A . F 3 HOH 81 218 76 HOH HOH A . F 3 HOH 82 219 77 HOH HOH A . F 3 HOH 83 220 78 HOH HOH A . F 3 HOH 84 221 79 HOH HOH A . F 3 HOH 85 222 80 HOH HOH A . F 3 HOH 86 223 81 HOH HOH A . F 3 HOH 87 224 82 HOH HOH A . F 3 HOH 88 225 83 HOH HOH A . F 3 HOH 89 226 84 HOH HOH A . F 3 HOH 90 227 85 HOH HOH A . F 3 HOH 91 228 86 HOH HOH A . F 3 HOH 92 229 87 HOH HOH A . F 3 HOH 93 230 88 HOH HOH A . F 3 HOH 94 231 89 HOH HOH A . F 3 HOH 95 232 90 HOH HOH A . F 3 HOH 96 233 91 HOH HOH A . F 3 HOH 97 234 92 HOH HOH A . F 3 HOH 98 235 93 HOH HOH A . F 3 HOH 99 236 94 HOH HOH A . F 3 HOH 100 237 95 HOH HOH A . F 3 HOH 101 238 96 HOH HOH A . F 3 HOH 102 239 97 HOH HOH A . F 3 HOH 103 240 98 HOH HOH A . F 3 HOH 104 241 99 HOH HOH A . F 3 HOH 105 242 100 HOH HOH A . F 3 HOH 106 243 101 HOH HOH A . F 3 HOH 107 244 102 HOH HOH A . F 3 HOH 108 245 103 HOH HOH A . F 3 HOH 109 246 104 HOH HOH A . F 3 HOH 110 247 105 HOH HOH A . F 3 HOH 111 248 106 HOH HOH A . F 3 HOH 112 249 107 HOH HOH A . F 3 HOH 113 250 108 HOH HOH A . F 3 HOH 114 251 109 HOH HOH A . F 3 HOH 115 252 110 HOH HOH A . F 3 HOH 116 253 111 HOH HOH A . F 3 HOH 117 254 112 HOH HOH A . F 3 HOH 118 255 113 HOH HOH A . F 3 HOH 119 256 114 HOH HOH A . F 3 HOH 120 257 115 HOH HOH A . F 3 HOH 121 258 116 HOH HOH A . F 3 HOH 122 259 117 HOH HOH A . F 3 HOH 123 260 118 HOH HOH A . F 3 HOH 124 261 119 HOH HOH A . F 3 HOH 125 262 120 HOH HOH A . F 3 HOH 126 263 121 HOH HOH A . F 3 HOH 127 264 122 HOH HOH A . F 3 HOH 128 265 123 HOH HOH A . F 3 HOH 129 266 124 HOH HOH A . F 3 HOH 130 267 125 HOH HOH A . F 3 HOH 131 268 126 HOH HOH A . F 3 HOH 132 269 127 HOH HOH A . F 3 HOH 133 270 128 HOH HOH A . F 3 HOH 134 271 129 HOH HOH A . F 3 HOH 135 272 130 HOH HOH A . F 3 HOH 136 273 131 HOH HOH A . F 3 HOH 137 274 132 HOH HOH A . F 3 HOH 138 275 133 HOH HOH A . F 3 HOH 139 276 134 HOH HOH A . F 3 HOH 140 277 135 HOH HOH A . F 3 HOH 141 278 136 HOH HOH A . F 3 HOH 142 279 137 HOH HOH A . F 3 HOH 143 280 138 HOH HOH A . F 3 HOH 144 281 139 HOH HOH A . F 3 HOH 145 282 140 HOH HOH A . F 3 HOH 146 283 141 HOH HOH A . F 3 HOH 147 284 142 HOH HOH A . F 3 HOH 148 285 143 HOH HOH A . F 3 HOH 149 286 144 HOH HOH A . F 3 HOH 150 287 145 HOH HOH A . F 3 HOH 151 288 146 HOH HOH A . F 3 HOH 152 289 147 HOH HOH A . F 3 HOH 153 290 148 HOH HOH A . #