HEADER ISOMERASE 16-DEC-08 3FKJ TITLE CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHOSUGAR ISOMERASE (STM_0572) FROM TITLE 2 SALMONELLA TYPHIMURIUM LT2 AT 2.12 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHOSUGAR ISOMERASES; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM LT2; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 GENE: NP_459564.1, STM0572; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3FKJ 1 REMARK SEQADV REVDAT 5 24-JUL-19 3FKJ 1 REMARK LINK REVDAT 4 01-NOV-17 3FKJ 1 REMARK REVDAT 3 13-JUL-11 3FKJ 1 VERSN REVDAT 2 23-MAR-11 3FKJ 1 HEADER TITLE KEYWDS REVDAT 1 13-JAN-09 3FKJ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PHOSPHOSUGAR ISOMERASE JRNL TITL 2 (NP_459564.1) FROM SALMONELLA TYPHIMURIUM LT2 AT 2.12 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 38084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1899 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2517 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.223 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.376 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5331 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3557 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7240 ; 1.413 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8621 ; 0.949 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 660 ; 6.286 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 253 ;34.425 ;23.755 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 852 ;14.931 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;17.767 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 782 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6020 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1143 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1095 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3755 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2576 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2714 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 317 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.156 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.163 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.113 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3278 ; 1.368 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1344 ; 0.373 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5246 ; 2.326 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2053 ; 4.160 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1992 ; 5.647 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 328 2 REMARK 3 1 B 1 B 328 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -6 A 328 REMARK 3 ORIGIN FOR THE GROUP (A): -20.8942 50.4927 157.2957 REMARK 3 T TENSOR REMARK 3 T11: -0.1026 T22: -0.1602 REMARK 3 T33: -0.0774 T12: 0.0938 REMARK 3 T13: 0.0577 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.4053 L22: 1.0900 REMARK 3 L33: 3.6221 L12: 0.0547 REMARK 3 L13: -0.5765 L23: -0.9465 REMARK 3 S TENSOR REMARK 3 S11: 0.1391 S12: 0.0974 S13: -0.0222 REMARK 3 S21: 0.1589 S22: -0.0219 S23: 0.2090 REMARK 3 S31: -0.5185 S32: -0.3213 S33: -0.1171 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 328 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0274 30.4552 157.0078 REMARK 3 T TENSOR REMARK 3 T11: -0.0458 T22: -0.0645 REMARK 3 T33: -0.0242 T12: 0.1623 REMARK 3 T13: 0.0979 T23: 0.0654 REMARK 3 L TENSOR REMARK 3 L11: 0.8181 L22: 1.2503 REMARK 3 L33: 3.4866 L12: 0.1999 REMARK 3 L13: -0.5759 L23: -0.7636 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: -0.0918 S13: -0.2636 REMARK 3 S21: -0.1751 S22: -0.2358 S23: -0.1803 REMARK 3 S31: 0.5673 S32: 0.6477 S33: 0.3034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. THIOCYANATE (SCN) MODELED ARE PRESENT IN CRYSTALLIZATION REMARK 3 CONDITIONS. REMARK 4 REMARK 4 3FKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90496,0.97858,0.97824 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38085 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 29.323 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 5.620 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NATHIOCYANATE, 20.0000% PEG REMARK 280 -3350, NO BUFFER PH 6.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 197.28667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.64333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 147.96500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.32167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 246.60833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 GLN B 79 REMARK 465 GLN B 80 REMARK 465 GLY B 81 REMARK 465 ASN B 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -6 CD OE1 OE2 REMARK 470 GLN A 80 CG CD OE1 NE2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 ARG B 9 CZ NH1 NH2 REMARK 470 LYS B 70 CD CE NZ REMARK 470 GLU B 159 CD OE1 OE2 REMARK 470 GLU B 327 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 184 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 141.87 -37.71 REMARK 500 THR A 83 104.08 -47.83 REMARK 500 SER A 286 133.48 179.17 REMARK 500 TYR A 322 -51.76 -122.78 REMARK 500 LYS A 325 -37.81 -135.40 REMARK 500 THR B 151 -75.23 -109.03 REMARK 500 TYR B 322 -53.94 -121.40 REMARK 500 LYS B 325 -47.92 -134.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN B 329 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391508 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 3FKJ A 1 328 UNP Q8ZR50 Q8ZR50_SALTY 1 328 DBREF 3FKJ B 1 328 UNP Q8ZR50 Q8ZR50_SALTY 1 328 SEQADV 3FKJ MSE A -18 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ GLY A -17 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ SER A -16 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ ASP A -15 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ LYS A -14 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ ILE A -13 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ HIS A -12 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ HIS A -11 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ HIS A -10 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ HIS A -9 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ HIS A -8 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ HIS A -7 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ GLU A -6 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ ASN A -5 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ LEU A -4 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ TYR A -3 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ PHE A -2 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ GLN A -1 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ GLY A 0 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ MSE B -18 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ GLY B -17 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ SER B -16 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ ASP B -15 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ LYS B -14 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ ILE B -13 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ HIS B -12 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ HIS B -11 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ HIS B -10 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ HIS B -9 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ HIS B -8 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ HIS B -7 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ GLU B -6 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ ASN B -5 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ LEU B -4 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ TYR B -3 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ PHE B -2 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ GLN B -1 UNP Q8ZR50 EXPRESSION TAG SEQADV 3FKJ GLY B 0 UNP Q8ZR50 EXPRESSION TAG SEQRES 1 A 347 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 347 ASN LEU TYR PHE GLN GLY MSE SER VAL ALA HIS GLU ASN SEQRES 3 A 347 ALA ARG ARG ILE ILE SER ASP ILE LEU GLY LYS GLN ASN SEQRES 4 A 347 ILE GLU ARG VAL TRP PHE VAL GLY CYS GLY GLY SER LEU SEQRES 5 A 347 THR GLY PHE TRP PRO GLY LYS TYR PHE LEU ASP CYS GLU SEQRES 6 A 347 ALA SER LYS LEU ALA VAL GLY TYR ILE THR SER ASN GLU SEQRES 7 A 347 PHE VAL HIS ALA THR PRO LYS ALA LEU GLY LYS ASN SER SEQRES 8 A 347 VAL VAL ILE LEU ALA SER GLN GLN GLY ASN THR ALA GLU SEQRES 9 A 347 THR VAL ALA ALA ALA ARG VAL ALA ARG GLU LYS GLY ALA SEQRES 10 A 347 ALA THR ILE GLY LEU VAL TYR GLN PRO ASP THR PRO LEU SEQRES 11 A 347 CYS GLU TYR SER ASP TYR ILE ILE GLU TYR GLN TRP ALA SEQRES 12 A 347 ARG TYR PRO GLU THR VAL ASP PRO ALA GLN GLN LYS ALA SEQRES 13 A 347 ALA TYR SER LEU TRP LEU ALA LEU GLU ILE LEU ALA GLN SEQRES 14 A 347 THR GLU GLY TYR ALA GLN TYR ASP GLU LEU VAL SER ALA SEQRES 15 A 347 PHE GLY ARG PHE SER ASP VAL VAL HIS GLY ALA GLN ARG SEQRES 16 A 347 GLN VAL GLN GLU ASP ALA GLN ARG PHE ALA ALA GLU TRP SEQRES 17 A 347 LYS ASP GLU LYS VAL VAL TYR MSE MSE GLY SER GLY PRO SEQRES 18 A 347 SER PHE GLY ALA ALA HIS GLN GLU SER ILE CYS ILE LEU SEQRES 19 A 347 LEU GLU MSE GLN TRP ILE ASN SER ALA SER ILE HIS SER SEQRES 20 A 347 GLY GLU TYR PHE HIS GLY PRO PHE GLU ILE THR GLU PRO SEQRES 21 A 347 GLY THR PRO PHE ILE LEU LEU GLN SER SER GLY ARG THR SEQRES 22 A 347 ARG PRO LEU ASP ASP ARG ALA ILE ARG PHE ILE GLU ARG SEQRES 23 A 347 TYR GLN GLY LYS LEU GLN LEU ILE ASP ALA ASP LYS LEU SEQRES 24 A 347 GLY ILE GLN ASP LEU SER THR ASP VAL GLY GLU TYR PHE SEQRES 25 A 347 CYS GLY LEU LEU HIS ASN CYS VAL LEU ASP VAL TYR ASN SEQRES 26 A 347 LEU ALA LEU ALA THR ALA ARG ASN HIS PRO LEU THR THR SEQRES 27 A 347 ARG ARG TYR MSE TRP LYS VAL GLU TYR SEQRES 1 B 347 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 347 ASN LEU TYR PHE GLN GLY MSE SER VAL ALA HIS GLU ASN SEQRES 3 B 347 ALA ARG ARG ILE ILE SER ASP ILE LEU GLY LYS GLN ASN SEQRES 4 B 347 ILE GLU ARG VAL TRP PHE VAL GLY CYS GLY GLY SER LEU SEQRES 5 B 347 THR GLY PHE TRP PRO GLY LYS TYR PHE LEU ASP CYS GLU SEQRES 6 B 347 ALA SER LYS LEU ALA VAL GLY TYR ILE THR SER ASN GLU SEQRES 7 B 347 PHE VAL HIS ALA THR PRO LYS ALA LEU GLY LYS ASN SER SEQRES 8 B 347 VAL VAL ILE LEU ALA SER GLN GLN GLY ASN THR ALA GLU SEQRES 9 B 347 THR VAL ALA ALA ALA ARG VAL ALA ARG GLU LYS GLY ALA SEQRES 10 B 347 ALA THR ILE GLY LEU VAL TYR GLN PRO ASP THR PRO LEU SEQRES 11 B 347 CYS GLU TYR SER ASP TYR ILE ILE GLU TYR GLN TRP ALA SEQRES 12 B 347 ARG TYR PRO GLU THR VAL ASP PRO ALA GLN GLN LYS ALA SEQRES 13 B 347 ALA TYR SER LEU TRP LEU ALA LEU GLU ILE LEU ALA GLN SEQRES 14 B 347 THR GLU GLY TYR ALA GLN TYR ASP GLU LEU VAL SER ALA SEQRES 15 B 347 PHE GLY ARG PHE SER ASP VAL VAL HIS GLY ALA GLN ARG SEQRES 16 B 347 GLN VAL GLN GLU ASP ALA GLN ARG PHE ALA ALA GLU TRP SEQRES 17 B 347 LYS ASP GLU LYS VAL VAL TYR MSE MSE GLY SER GLY PRO SEQRES 18 B 347 SER PHE GLY ALA ALA HIS GLN GLU SER ILE CYS ILE LEU SEQRES 19 B 347 LEU GLU MSE GLN TRP ILE ASN SER ALA SER ILE HIS SER SEQRES 20 B 347 GLY GLU TYR PHE HIS GLY PRO PHE GLU ILE THR GLU PRO SEQRES 21 B 347 GLY THR PRO PHE ILE LEU LEU GLN SER SER GLY ARG THR SEQRES 22 B 347 ARG PRO LEU ASP ASP ARG ALA ILE ARG PHE ILE GLU ARG SEQRES 23 B 347 TYR GLN GLY LYS LEU GLN LEU ILE ASP ALA ASP LYS LEU SEQRES 24 B 347 GLY ILE GLN ASP LEU SER THR ASP VAL GLY GLU TYR PHE SEQRES 25 B 347 CYS GLY LEU LEU HIS ASN CYS VAL LEU ASP VAL TYR ASN SEQRES 26 B 347 LEU ALA LEU ALA THR ALA ARG ASN HIS PRO LEU THR THR SEQRES 27 B 347 ARG ARG TYR MSE TRP LYS VAL GLU TYR MODRES 3FKJ MSE A 1 MET SELENOMETHIONINE MODRES 3FKJ MSE A 197 MET SELENOMETHIONINE MODRES 3FKJ MSE A 198 MET SELENOMETHIONINE MODRES 3FKJ MSE A 218 MET SELENOMETHIONINE MODRES 3FKJ MSE A 323 MET SELENOMETHIONINE MODRES 3FKJ MSE B 1 MET SELENOMETHIONINE MODRES 3FKJ MSE B 197 MET SELENOMETHIONINE MODRES 3FKJ MSE B 198 MET SELENOMETHIONINE MODRES 3FKJ MSE B 218 MET SELENOMETHIONINE MODRES 3FKJ MSE B 323 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 197 8 HET MSE A 198 13 HET MSE A 218 8 HET MSE A 323 8 HET MSE B 1 8 HET MSE B 197 8 HET MSE B 198 8 HET MSE B 218 8 HET MSE B 323 8 HET SCN A 329 3 HET SCN B 329 3 HETNAM MSE SELENOMETHIONINE HETNAM SCN THIOCYANATE ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 SCN 2(C N S 1-) FORMUL 5 HOH *316(H2 O) HELIX 1 1 SER A 2 GLY A 17 1 16 HELIX 2 2 GLY A 30 GLY A 35 1 6 HELIX 3 3 PHE A 36 ALA A 47 1 12 HELIX 4 4 SER A 57 ALA A 63 1 7 HELIX 5 5 THR A 83 GLY A 97 1 15 HELIX 6 6 THR A 109 TYR A 114 1 6 HELIX 7 7 ASP A 131 GLN A 134 5 4 HELIX 8 8 GLN A 135 GLU A 152 1 18 HELIX 9 9 GLN A 156 ARG A 166 1 11 HELIX 10 10 ARG A 166 VAL A 178 1 13 HELIX 11 11 VAL A 178 LYS A 190 1 13 HELIX 12 12 SER A 203 ILE A 214 1 12 HELIX 13 13 ILE A 214 TRP A 220 1 7 HELIX 14 14 GLY A 229 THR A 239 5 11 HELIX 15 15 THR A 254 TYR A 268 1 15 HELIX 16 16 ASP A 278 GLY A 281 5 4 HELIX 17 17 VAL A 289 TYR A 292 5 4 HELIX 18 18 PHE A 293 ARG A 313 1 21 HELIX 19 19 SER B 2 GLY B 17 1 16 HELIX 20 20 GLY B 30 GLY B 35 1 6 HELIX 21 21 PHE B 36 ALA B 47 1 12 HELIX 22 22 SER B 57 ALA B 63 1 7 HELIX 23 23 THR B 83 LYS B 96 1 14 HELIX 24 24 THR B 109 SER B 115 5 7 HELIX 25 25 ASP B 131 GLN B 134 5 4 HELIX 26 26 GLN B 135 GLU B 152 1 18 HELIX 27 27 GLN B 156 VAL B 178 1 23 HELIX 28 28 VAL B 178 LYS B 190 1 13 HELIX 29 29 SER B 203 ILE B 214 1 12 HELIX 30 30 ILE B 214 TRP B 220 1 7 HELIX 31 31 GLY B 229 THR B 239 5 11 HELIX 32 32 SER B 251 ARG B 253 5 3 HELIX 33 33 THR B 254 TYR B 268 1 15 HELIX 34 34 GLY B 281 SER B 286 1 6 HELIX 35 35 VAL B 289 TYR B 292 5 4 HELIX 36 36 PHE B 293 ARG B 313 1 21 SHEET 1 A 5 ALA A 51 THR A 56 0 SHEET 2 A 5 ARG A 23 GLY A 28 1 N VAL A 24 O GLY A 53 SHEET 3 A 5 SER A 72 SER A 78 1 O ILE A 75 N TRP A 25 SHEET 4 A 5 ALA A 99 VAL A 104 1 O ALA A 99 N VAL A 74 SHEET 5 A 5 TYR A 117 GLU A 120 1 O TYR A 117 N GLY A 102 SHEET 1 B 4 ASN A 222 HIS A 227 0 SHEET 2 B 4 VAL A 194 GLY A 199 1 N VAL A 195 O ASN A 222 SHEET 3 B 4 PRO A 244 GLN A 249 1 O LEU A 248 N MSE A 198 SHEET 4 B 4 LYS A 271 ASP A 276 1 O LYS A 271 N PHE A 245 SHEET 1 C 5 ALA B 51 THR B 56 0 SHEET 2 C 5 ARG B 23 GLY B 28 1 N VAL B 24 O GLY B 53 SHEET 3 C 5 SER B 72 ALA B 77 1 O ILE B 75 N TRP B 25 SHEET 4 C 5 ALA B 99 VAL B 104 1 O ILE B 101 N LEU B 76 SHEET 5 C 5 TYR B 117 GLU B 120 1 O ILE B 119 N GLY B 102 SHEET 1 D 4 ASN B 222 HIS B 227 0 SHEET 2 D 4 VAL B 194 GLY B 199 1 N VAL B 195 O ASN B 222 SHEET 3 D 4 PRO B 244 GLN B 249 1 O LEU B 248 N MSE B 198 SHEET 4 D 4 LYS B 271 ASP B 276 1 O GLN B 273 N PHE B 245 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.35 LINK C TYR A 196 N MSE A 197 1555 1555 1.34 LINK C MSE A 197 N MSE A 198 1555 1555 1.32 LINK C MSE A 198 N GLY A 199 1555 1555 1.32 LINK C GLU A 217 N MSE A 218 1555 1555 1.33 LINK C MSE A 218 N GLN A 219 1555 1555 1.33 LINK C TYR A 322 N MSE A 323 1555 1555 1.33 LINK C MSE A 323 N TRP A 324 1555 1555 1.34 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C TYR B 196 N MSE B 197 1555 1555 1.34 LINK C MSE B 197 N MSE B 198 1555 1555 1.33 LINK C MSE B 198 N GLY B 199 1555 1555 1.32 LINK C GLU B 217 N MSE B 218 1555 1555 1.33 LINK C MSE B 218 N GLN B 219 1555 1555 1.34 LINK C TYR B 322 N MSE B 323 1555 1555 1.33 LINK C MSE B 323 N TRP B 324 1555 1555 1.33 CISPEP 1 TYR A 126 PRO A 127 0 11.14 CISPEP 2 TYR B 126 PRO B 127 0 9.31 SITE 1 AC1 6 PRO A 132 GLN A 135 ALA A 137 LEU A 296 SITE 2 AC1 6 ASN A 299 HOH A 356 SITE 1 AC2 7 PRO B 132 GLN B 135 ALA B 137 PHE B 167 SITE 2 AC2 7 LEU B 296 ASN B 299 HOH B 433 CRYST1 63.880 63.880 295.930 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015654 0.009038 0.000000 0.00000 SCALE2 0.000000 0.018076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003379 0.00000