data_3FKM # _entry.id 3FKM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FKM pdb_00003fkm 10.2210/pdb3fkm/pdb RCSB RCSB050705 ? ? WWPDB D_1000050705 ? ? # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2023-02-01 _pdbx_database_PDB_obs_spr.pdb_id 5ULC _pdbx_database_PDB_obs_spr.replace_pdb_id 3FKM _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 3FKM _pdbx_database_status.recvd_initial_deposition_date 2008-12-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wernimont, A.K.' 1 'Amaya, M.F.' 2 'Lam, A.' 3 'Ali, A.' 4 'Zhang, A.Z.' 5 'Kenzina, L.' 6 'Lin, Y.H.' 7 'Mackenzie, F.' 8 'Kozieradzki, I.' 9 'Cossar, D.' 10 'Schapira, M.' 11 'Bochkarev, A.' 12 'Arrowsmith, C.H.' 13 'Bountra, C.' 14 'Weigelt, J.' 15 'Edwards, A.M.' 16 'Hui, R.' 17 'Qiu, W.' 18 'Brand, V.' 19 'Structural Genomics Consortium (SGC)' 20 # _citation.id primary _citation.title 'Plasmodium falciparum bromodomain-containing protein PF10_0328' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wernimont, A.K.' 1 ? primary 'Amaya, M.F.' 2 ? primary 'Lam, A.' 3 ? primary 'Ali, A.' 4 ? primary 'Zhang, A.Z.' 5 ? primary 'Kenzina, L.' 6 ? primary 'Lin, Y.H.' 7 ? primary 'Mackenzie, F.' 8 ? primary 'Kozieradzki, I.' 9 ? primary 'Cossar, D.' 10 ? primary 'Schapira, M.' 11 ? primary 'Bochkarev, A.' 12 ? primary 'Arrowsmith, C.H.' 13 ? primary 'Bountra, C.' 14 ? primary 'Weigelt, J.' 15 ? primary 'Edwards, A.M.' 16 ? primary 'Hui, R.' 17 ? primary 'Qiu, W.' 18 ? primary 'Brand, V.' 19 ? # _cell.entry_id 3FKM _cell.length_a 37.603 _cell.length_b 88.265 _cell.length_c 106.493 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FKM _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Signaling protein' 19773.770 1 ? ? 'UNP residues 333-480' ? 2 water nat water 18.015 28 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)HHHHHHSSGRENLYFQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNP(MSE)SFSCIKTK LKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIV(MSE)GYNNFILKEKKIND(MSE)LKLVEE ENIKWSKEKEDQIEEIDELENN ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGRENLYFQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAY PSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGYNNFILKEKKINDMLKLVEEENIKWSKEKEDQIEEI DELENN ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 ARG n 1 12 GLU n 1 13 ASN n 1 14 LEU n 1 15 TYR n 1 16 PHE n 1 17 GLN n 1 18 GLY n 1 19 ASN n 1 20 LYS n 1 21 GLN n 1 22 TRP n 1 23 TYR n 1 24 LEU n 1 25 LEU n 1 26 ALA n 1 27 ASN n 1 28 GLN n 1 29 LEU n 1 30 ILE n 1 31 LEU n 1 32 SER n 1 33 LEU n 1 34 SER n 1 35 LYS n 1 36 TYR n 1 37 GLU n 1 38 GLY n 1 39 GLY n 1 40 HIS n 1 41 ILE n 1 42 PHE n 1 43 GLU n 1 44 LYS n 1 45 LEU n 1 46 VAL n 1 47 ASP n 1 48 ALA n 1 49 LYS n 1 50 LYS n 1 51 GLN n 1 52 ASN n 1 53 CYS n 1 54 PRO n 1 55 ASP n 1 56 TYR n 1 57 TYR n 1 58 ASP n 1 59 VAL n 1 60 ILE n 1 61 LYS n 1 62 ASN n 1 63 PRO n 1 64 MSE n 1 65 SER n 1 66 PHE n 1 67 SER n 1 68 CYS n 1 69 ILE n 1 70 LYS n 1 71 THR n 1 72 LYS n 1 73 LEU n 1 74 LYS n 1 75 LYS n 1 76 GLY n 1 77 GLN n 1 78 TYR n 1 79 ALA n 1 80 TYR n 1 81 PRO n 1 82 SER n 1 83 GLU n 1 84 PHE n 1 85 VAL n 1 86 LYS n 1 87 ASP n 1 88 VAL n 1 89 GLN n 1 90 LEU n 1 91 ILE n 1 92 PHE n 1 93 ASP n 1 94 ASN n 1 95 CYS n 1 96 SER n 1 97 LEU n 1 98 TYR n 1 99 ASN n 1 100 THR n 1 101 SER n 1 102 ASN n 1 103 SER n 1 104 VAL n 1 105 VAL n 1 106 ALA n 1 107 ILE n 1 108 THR n 1 109 GLY n 1 110 LYS n 1 111 ASN n 1 112 ILE n 1 113 GLU n 1 114 THR n 1 115 TYR n 1 116 PHE n 1 117 ASN n 1 118 ASN n 1 119 GLN n 1 120 LEU n 1 121 ILE n 1 122 VAL n 1 123 MSE n 1 124 GLY n 1 125 TYR n 1 126 ASN n 1 127 ASN n 1 128 PHE n 1 129 ILE n 1 130 LEU n 1 131 LYS n 1 132 GLU n 1 133 LYS n 1 134 LYS n 1 135 ILE n 1 136 ASN n 1 137 ASP n 1 138 MSE n 1 139 LEU n 1 140 LYS n 1 141 LEU n 1 142 VAL n 1 143 GLU n 1 144 GLU n 1 145 GLU n 1 146 ASN n 1 147 ILE n 1 148 LYS n 1 149 TRP n 1 150 SER n 1 151 LYS n 1 152 GLU n 1 153 LYS n 1 154 GLU n 1 155 ASP n 1 156 GLN n 1 157 ILE n 1 158 GLU n 1 159 GLU n 1 160 ILE n 1 161 ASP n 1 162 GLU n 1 163 LEU n 1 164 GLU n 1 165 ASN n 1 166 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PF10_0328 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Plasmodium falciparum 3D7' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 36329 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8IJ72_PLAF7 _struct_ref.pdbx_db_accession Q8IJ72 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLY NTSNSVVAITGKNIETYFNNQLIVMGYNNFILKEKKINDMLKLVEEENIKWSKEKEDQIEEIDELENN ; _struct_ref.pdbx_align_begin 333 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FKM _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 19 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 166 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8IJ72 _struct_ref_seq.db_align_beg 333 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 480 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 333 _struct_ref_seq.pdbx_auth_seq_align_end 480 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FKM MSE X 1 ? UNP Q8IJ72 ? ? 'expression tag' 315 1 1 3FKM HIS X 2 ? UNP Q8IJ72 ? ? 'expression tag' 316 2 1 3FKM HIS X 3 ? UNP Q8IJ72 ? ? 'expression tag' 317 3 1 3FKM HIS X 4 ? UNP Q8IJ72 ? ? 'expression tag' 318 4 1 3FKM HIS X 5 ? UNP Q8IJ72 ? ? 'expression tag' 319 5 1 3FKM HIS X 6 ? UNP Q8IJ72 ? ? 'expression tag' 320 6 1 3FKM HIS X 7 ? UNP Q8IJ72 ? ? 'expression tag' 321 7 1 3FKM SER X 8 ? UNP Q8IJ72 ? ? 'expression tag' 322 8 1 3FKM SER X 9 ? UNP Q8IJ72 ? ? 'expression tag' 323 9 1 3FKM GLY X 10 ? UNP Q8IJ72 ? ? 'expression tag' 324 10 1 3FKM ARG X 11 ? UNP Q8IJ72 ? ? 'expression tag' 325 11 1 3FKM GLU X 12 ? UNP Q8IJ72 ? ? 'expression tag' 326 12 1 3FKM ASN X 13 ? UNP Q8IJ72 ? ? 'expression tag' 327 13 1 3FKM LEU X 14 ? UNP Q8IJ72 ? ? 'expression tag' 328 14 1 3FKM TYR X 15 ? UNP Q8IJ72 ? ? 'expression tag' 329 15 1 3FKM PHE X 16 ? UNP Q8IJ72 ? ? 'expression tag' 330 16 1 3FKM GLN X 17 ? UNP Q8IJ72 ? ? 'expression tag' 331 17 1 3FKM GLY X 18 ? UNP Q8IJ72 ? ? 'expression tag' 332 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3FKM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_percent_sol 44.95 _exptl_crystal.description 'Authors used new PHASER version that combines SAD phases with MR solutions' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '8% PEG 8000, 0.1 M Tris, Chymotrypsin, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2008-11-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength .97948 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list .97948 # _reflns.entry_id 3FKM _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.400 _reflns.number_obs 6593 _reflns.number_all 7262 _reflns.percent_possible_obs 90.800 _reflns.pdbx_Rmerge_I_obs .115 _reflns.pdbx_Rsym_value .129 _reflns.pdbx_netI_over_sigmaI 20.200 _reflns.B_iso_Wilson_estimate 41.2 _reflns.pdbx_redundancy 6.400 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 68.90 _reflns_shell.Rmerge_I_obs 0.172 _reflns_shell.pdbx_Rsym_value .162 _reflns_shell.meanI_over_sigI_obs 8.93 _reflns_shell.pdbx_redundancy 5.60 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 484 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3FKM _refine.ls_number_reflns_obs 5764 _refine.ls_number_reflns_all 7262 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.00 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 93.54 _refine.ls_R_factor_obs 0.21629 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21286 _refine.ls_R_factor_R_free 0.28875 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.5 _refine.ls_number_reflns_R_free 270 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.899 _refine.B_iso_mean 35.348 _refine.aniso_B[1][1] -5.71 _refine.aniso_B[2][2] 11.73 _refine.aniso_B[3][3] -6.02 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 2rjf' _refine.pdbx_method_to_determine_struct MR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.419 _refine.pdbx_overall_ESU_R_Free 0.313 _refine.overall_SU_ML 0.215 _refine.overall_SU_B 19.495 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 962 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 990 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 35.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 999 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.463 1.964 ? 1351 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.089 5.000 ? 124 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.330 26.136 ? 44 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.025 15.000 ? 185 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.103 0.200 ? 150 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 738 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.231 0.200 ? 446 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.323 0.200 ? 711 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.208 0.200 ? 40 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.223 0.200 ? 24 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.136 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.725 1.500 ? 624 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.085 2.000 ? 981 'X-RAY DIFFRACTION' ? r_scbond_it 1.938 3.000 ? 434 'X-RAY DIFFRACTION' ? r_scangle_it 2.792 4.500 ? 368 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.number_reflns_R_work 322 _refine_ls_shell.R_factor_R_work 0.198 _refine_ls_shell.percent_reflns_obs 72.79 _refine_ls_shell.R_factor_R_free 0.382 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FKM _struct.title 'Plasmodium falciparum bromodomain-containing protein PF10_0328' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FKM _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'bromodomain, malaria, Structural Genomics, Structural Genomics Consortium, SGC, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details / # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 19 ? SER A 34 ? ASN X 333 SER X 348 1 ? 16 HELX_P HELX_P2 2 GLY A 38 ? GLU A 43 ? GLY X 352 GLU X 357 5 ? 6 HELX_P HELX_P3 3 ASP A 55 ? VAL A 59 ? ASP X 369 VAL X 373 5 ? 5 HELX_P HELX_P4 4 SER A 65 ? GLY A 76 ? SER X 379 GLY X 390 1 ? 12 HELX_P HELX_P5 5 TYR A 80 ? TYR A 98 ? TYR X 394 TYR X 412 1 ? 19 HELX_P HELX_P6 6 SER A 103 ? MSE A 123 ? SER X 417 MSE X 437 1 ? 21 HELX_P HELX_P7 7 GLY A 124 ? LYS A 140 ? GLY X 438 LYS X 454 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 63 C ? ? ? 1_555 A MSE 64 N ? ? X PRO 377 X MSE 378 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale2 covale both ? A MSE 64 C ? ? ? 1_555 A SER 65 N ? ? X MSE 378 X SER 379 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A VAL 122 C ? ? ? 1_555 A MSE 123 N ? ? X VAL 436 X MSE 437 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A MSE 123 C ? ? ? 1_555 A GLY 124 N ? ? X MSE 437 X GLY 438 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale5 covale both ? A ASP 137 C ? ? ? 1_555 A MSE 138 N ? ? X ASP 451 X MSE 452 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale6 covale both ? A MSE 138 C ? ? ? 1_555 A LEU 139 N ? ? X MSE 452 X LEU 453 1_555 ? ? ? ? ? ? ? 1.335 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3FKM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FKM _atom_sites.fract_transf_matrix[1][1] 0.026594 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011330 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009390 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 315 ? ? ? X . n A 1 2 HIS 2 316 ? ? ? X . n A 1 3 HIS 3 317 ? ? ? X . n A 1 4 HIS 4 318 ? ? ? X . n A 1 5 HIS 5 319 ? ? ? X . n A 1 6 HIS 6 320 ? ? ? X . n A 1 7 HIS 7 321 ? ? ? X . n A 1 8 SER 8 322 ? ? ? X . n A 1 9 SER 9 323 ? ? ? X . n A 1 10 GLY 10 324 ? ? ? X . n A 1 11 ARG 11 325 ? ? ? X . n A 1 12 GLU 12 326 ? ? ? X . n A 1 13 ASN 13 327 ? ? ? X . n A 1 14 LEU 14 328 ? ? ? X . n A 1 15 TYR 15 329 ? ? ? X . n A 1 16 PHE 16 330 ? ? ? X . n A 1 17 GLN 17 331 331 GLN GLN X . n A 1 18 GLY 18 332 332 GLY GLY X . n A 1 19 ASN 19 333 333 ASN ASN X . n A 1 20 LYS 20 334 334 LYS LYS X . n A 1 21 GLN 21 335 335 GLN GLN X . n A 1 22 TRP 22 336 336 TRP TRP X . n A 1 23 TYR 23 337 337 TYR TYR X . n A 1 24 LEU 24 338 338 LEU LEU X . n A 1 25 LEU 25 339 339 LEU LEU X . n A 1 26 ALA 26 340 340 ALA ALA X . n A 1 27 ASN 27 341 341 ASN ASN X . n A 1 28 GLN 28 342 342 GLN GLN X . n A 1 29 LEU 29 343 343 LEU LEU X . n A 1 30 ILE 30 344 344 ILE ILE X . n A 1 31 LEU 31 345 345 LEU LEU X . n A 1 32 SER 32 346 346 SER SER X . n A 1 33 LEU 33 347 347 LEU LEU X . n A 1 34 SER 34 348 348 SER SER X . n A 1 35 LYS 35 349 349 LYS LYS X . n A 1 36 TYR 36 350 350 TYR TYR X . n A 1 37 GLU 37 351 351 GLU GLU X . n A 1 38 GLY 38 352 352 GLY GLY X . n A 1 39 GLY 39 353 353 GLY GLY X . n A 1 40 HIS 40 354 354 HIS HIS X . n A 1 41 ILE 41 355 355 ILE ILE X . n A 1 42 PHE 42 356 356 PHE PHE X . n A 1 43 GLU 43 357 357 GLU GLU X . n A 1 44 LYS 44 358 358 LYS LYS X . n A 1 45 LEU 45 359 359 LEU LEU X . n A 1 46 VAL 46 360 360 VAL VAL X . n A 1 47 ASP 47 361 361 ASP ASP X . n A 1 48 ALA 48 362 ? ? ? X . n A 1 49 LYS 49 363 ? ? ? X . n A 1 50 LYS 50 364 ? ? ? X . n A 1 51 GLN 51 365 ? ? ? X . n A 1 52 ASN 52 366 ? ? ? X . n A 1 53 CYS 53 367 367 CYS CYS X . n A 1 54 PRO 54 368 368 PRO PRO X . n A 1 55 ASP 55 369 369 ASP ASP X . n A 1 56 TYR 56 370 370 TYR TYR X . n A 1 57 TYR 57 371 371 TYR TYR X . n A 1 58 ASP 58 372 372 ASP ASP X . n A 1 59 VAL 59 373 373 VAL VAL X . n A 1 60 ILE 60 374 374 ILE ILE X . n A 1 61 LYS 61 375 375 LYS LYS X . n A 1 62 ASN 62 376 376 ASN ASN X . n A 1 63 PRO 63 377 377 PRO PRO X . n A 1 64 MSE 64 378 378 MSE MSE X . n A 1 65 SER 65 379 379 SER SER X . n A 1 66 PHE 66 380 380 PHE PHE X . n A 1 67 SER 67 381 381 SER SER X . n A 1 68 CYS 68 382 382 CYS CYS X . n A 1 69 ILE 69 383 383 ILE ILE X . n A 1 70 LYS 70 384 384 LYS LYS X . n A 1 71 THR 71 385 385 THR THR X . n A 1 72 LYS 72 386 386 LYS LYS X . n A 1 73 LEU 73 387 387 LEU LEU X . n A 1 74 LYS 74 388 388 LYS LYS X . n A 1 75 LYS 75 389 389 LYS LYS X . n A 1 76 GLY 76 390 390 GLY GLY X . n A 1 77 GLN 77 391 391 GLN GLN X . n A 1 78 TYR 78 392 392 TYR TYR X . n A 1 79 ALA 79 393 393 ALA ALA X . n A 1 80 TYR 80 394 394 TYR TYR X . n A 1 81 PRO 81 395 395 PRO PRO X . n A 1 82 SER 82 396 396 SER SER X . n A 1 83 GLU 83 397 397 GLU GLU X . n A 1 84 PHE 84 398 398 PHE PHE X . n A 1 85 VAL 85 399 399 VAL VAL X . n A 1 86 LYS 86 400 400 LYS LYS X . n A 1 87 ASP 87 401 401 ASP ASP X . n A 1 88 VAL 88 402 402 VAL VAL X . n A 1 89 GLN 89 403 403 GLN GLN X . n A 1 90 LEU 90 404 404 LEU LEU X . n A 1 91 ILE 91 405 405 ILE ILE X . n A 1 92 PHE 92 406 406 PHE PHE X . n A 1 93 ASP 93 407 407 ASP ASP X . n A 1 94 ASN 94 408 408 ASN ASN X . n A 1 95 CYS 95 409 409 CYS CYS X . n A 1 96 SER 96 410 410 SER SER X . n A 1 97 LEU 97 411 411 LEU LEU X . n A 1 98 TYR 98 412 412 TYR TYR X . n A 1 99 ASN 99 413 413 ASN ASN X . n A 1 100 THR 100 414 414 THR THR X . n A 1 101 SER 101 415 415 SER SER X . n A 1 102 ASN 102 416 416 ASN ASN X . n A 1 103 SER 103 417 417 SER SER X . n A 1 104 VAL 104 418 418 VAL VAL X . n A 1 105 VAL 105 419 419 VAL VAL X . n A 1 106 ALA 106 420 420 ALA ALA X . n A 1 107 ILE 107 421 421 ILE ILE X . n A 1 108 THR 108 422 422 THR THR X . n A 1 109 GLY 109 423 423 GLY GLY X . n A 1 110 LYS 110 424 424 LYS LYS X . n A 1 111 ASN 111 425 425 ASN ASN X . n A 1 112 ILE 112 426 426 ILE ILE X . n A 1 113 GLU 113 427 427 GLU GLU X . n A 1 114 THR 114 428 428 THR THR X . n A 1 115 TYR 115 429 429 TYR TYR X . n A 1 116 PHE 116 430 430 PHE PHE X . n A 1 117 ASN 117 431 431 ASN ASN X . n A 1 118 ASN 118 432 432 ASN ASN X . n A 1 119 GLN 119 433 433 GLN GLN X . n A 1 120 LEU 120 434 434 LEU LEU X . n A 1 121 ILE 121 435 435 ILE ILE X . n A 1 122 VAL 122 436 436 VAL VAL X . n A 1 123 MSE 123 437 437 MSE MSE X . n A 1 124 GLY 124 438 438 GLY GLY X . n A 1 125 TYR 125 439 439 TYR TYR X . n A 1 126 ASN 126 440 440 ASN ASN X . n A 1 127 ASN 127 441 441 ASN ASN X . n A 1 128 PHE 128 442 442 PHE PHE X . n A 1 129 ILE 129 443 443 ILE ILE X . n A 1 130 LEU 130 444 444 LEU LEU X . n A 1 131 LYS 131 445 445 LYS LYS X . n A 1 132 GLU 132 446 446 GLU GLU X . n A 1 133 LYS 133 447 447 LYS LYS X . n A 1 134 LYS 134 448 448 LYS LYS X . n A 1 135 ILE 135 449 449 ILE ILE X . n A 1 136 ASN 136 450 450 ASN ASN X . n A 1 137 ASP 137 451 451 ASP ASP X . n A 1 138 MSE 138 452 452 MSE MSE X . n A 1 139 LEU 139 453 453 LEU LEU X . n A 1 140 LYS 140 454 454 LYS LYS X . n A 1 141 LEU 141 455 455 LEU LEU X . n A 1 142 VAL 142 456 ? ? ? X . n A 1 143 GLU 143 457 ? ? ? X . n A 1 144 GLU 144 458 ? ? ? X . n A 1 145 GLU 145 459 ? ? ? X . n A 1 146 ASN 146 460 ? ? ? X . n A 1 147 ILE 147 461 ? ? ? X . n A 1 148 LYS 148 462 ? ? ? X . n A 1 149 TRP 149 463 ? ? ? X . n A 1 150 SER 150 464 ? ? ? X . n A 1 151 LYS 151 465 ? ? ? X . n A 1 152 GLU 152 466 ? ? ? X . n A 1 153 LYS 153 467 ? ? ? X . n A 1 154 GLU 154 468 ? ? ? X . n A 1 155 ASP 155 469 ? ? ? X . n A 1 156 GLN 156 470 ? ? ? X . n A 1 157 ILE 157 471 ? ? ? X . n A 1 158 GLU 158 472 ? ? ? X . n A 1 159 GLU 159 473 ? ? ? X . n A 1 160 ILE 160 474 ? ? ? X . n A 1 161 ASP 161 475 ? ? ? X . n A 1 162 GLU 162 476 ? ? ? X . n A 1 163 LEU 163 477 ? ? ? X . n A 1 164 GLU 164 478 ? ? ? X . n A 1 165 ASN 165 479 ? ? ? X . n A 1 166 ASN 166 480 ? ? ? X . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2 2 HOH HOH X . B 2 HOH 2 3 3 HOH HOH X . B 2 HOH 3 6 6 HOH HOH X . B 2 HOH 4 7 7 HOH HOH X . B 2 HOH 5 8 8 HOH HOH X . B 2 HOH 6 9 9 HOH HOH X . B 2 HOH 7 10 10 HOH HOH X . B 2 HOH 8 11 11 HOH HOH X . B 2 HOH 9 13 13 HOH HOH X . B 2 HOH 10 15 15 HOH HOH X . B 2 HOH 11 16 16 HOH HOH X . B 2 HOH 12 17 17 HOH HOH X . B 2 HOH 13 19 19 HOH HOH X . B 2 HOH 14 21 21 HOH HOH X . B 2 HOH 15 22 22 HOH HOH X . B 2 HOH 16 23 23 HOH HOH X . B 2 HOH 17 25 25 HOH HOH X . B 2 HOH 18 26 26 HOH HOH X . B 2 HOH 19 28 28 HOH HOH X . B 2 HOH 20 29 29 HOH HOH X . B 2 HOH 21 30 30 HOH HOH X . B 2 HOH 22 31 31 HOH HOH X . B 2 HOH 23 32 32 HOH HOH X . B 2 HOH 24 34 34 HOH HOH X . B 2 HOH 25 35 35 HOH HOH X . B 2 HOH 26 36 36 HOH HOH X . B 2 HOH 27 37 37 HOH HOH X . B 2 HOH 28 38 38 HOH HOH X . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 64 X MSE 378 ? MET SELENOMETHIONINE 2 A MSE 123 X MSE 437 ? MET SELENOMETHIONINE 3 A MSE 138 X MSE 452 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-01-13 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-02-01 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Obsolete ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_PDB_obs_spr 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code' 4 3 'Structure model' '_pdbx_database_status.status_code_sf' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 16.8973 24.0215 46.1933 0.2048 0.4151 0.3762 0.1219 0.1209 0.2238 1.1641 6.8763 4.8793 2.8262 -1.2267 -2.7455 -0.1145 0.4629 0.2328 0.4217 1.4524 1.4593 -1.0542 -2.9325 -1.3380 'X-RAY DIFFRACTION' 2 ? refined 30.4884 14.6326 36.0629 0.1105 0.1984 0.2127 -0.0495 -0.0004 -0.0659 10.4172 3.1825 5.7055 -2.3655 -5.6681 1.2371 -0.0376 0.8230 -0.9721 -0.0564 -0.0857 -0.2565 0.5952 -0.4078 0.1233 'X-RAY DIFFRACTION' 3 ? refined 36.6271 17.4076 46.1760 0.1404 0.1514 0.0909 -0.0278 0.0292 -0.0032 12.8327 0.0854 1.1585 1.0157 0.2096 -0.0598 0.0533 -0.4953 -0.7411 0.1545 0.0121 -0.0727 -0.0203 0.6023 -0.0654 'X-RAY DIFFRACTION' 4 ? refined 37.1509 23.1919 34.1907 0.1243 0.1302 -0.0112 -0.0362 0.0257 0.0191 2.7694 1.8528 3.1003 -0.6694 -0.9129 0.4262 0.0498 0.1038 -0.1446 -0.0867 -0.0673 0.2496 -0.4147 0.0746 0.0175 'X-RAY DIFFRACTION' 5 ? refined 24.1956 37.1959 51.1768 0.8911 0.4960 0.5837 0.1695 0.1467 -0.0788 15.4249 40.5223 30.2646 2.4319 5.8012 16.5579 -0.3241 -3.6019 0.8627 2.7142 -0.7266 2.2092 -1.2494 -2.6795 1.0506 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.pdbx_refine_id 1 1 X 331 ? ? X 336 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 X 337 ? ? X 360 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 X 361 ? ? X 406 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 X 407 ? ? X 442 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 X 443 ? ? X 456 ? ? ? ? 'X-RAY DIFFRACTION' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 X _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 23 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 X _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 32 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_455 _pdbx_validate_symm_contact.dist 2.00 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU X 351 ? ? -38.71 113.70 2 1 VAL X 360 ? ? -51.45 100.82 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X VAL 360 ? CG1 ? A VAL 46 CG1 2 1 Y 1 X VAL 360 ? CG2 ? A VAL 46 CG2 3 1 Y 1 X ASP 361 ? CG ? A ASP 47 CG 4 1 Y 1 X ASP 361 ? OD1 ? A ASP 47 OD1 5 1 Y 1 X ASP 361 ? OD2 ? A ASP 47 OD2 6 1 Y 1 X LYS 448 ? CG ? A LYS 134 CG 7 1 Y 1 X LYS 448 ? CD ? A LYS 134 CD 8 1 Y 1 X LYS 448 ? CE ? A LYS 134 CE 9 1 Y 1 X LYS 448 ? NZ ? A LYS 134 NZ 10 1 Y 1 X ASP 451 ? CG ? A ASP 137 CG 11 1 Y 1 X ASP 451 ? OD1 ? A ASP 137 OD1 12 1 Y 1 X ASP 451 ? OD2 ? A ASP 137 OD2 13 1 Y 1 X MSE 452 ? CE ? A MSE 138 CE 14 1 Y 1 X LYS 454 ? CD ? A LYS 140 CD 15 1 Y 1 X LYS 454 ? CE ? A LYS 140 CE 16 1 Y 1 X LYS 454 ? NZ ? A LYS 140 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X MSE 315 ? A MSE 1 2 1 Y 1 X HIS 316 ? A HIS 2 3 1 Y 1 X HIS 317 ? A HIS 3 4 1 Y 1 X HIS 318 ? A HIS 4 5 1 Y 1 X HIS 319 ? A HIS 5 6 1 Y 1 X HIS 320 ? A HIS 6 7 1 Y 1 X HIS 321 ? A HIS 7 8 1 Y 1 X SER 322 ? A SER 8 9 1 Y 1 X SER 323 ? A SER 9 10 1 Y 1 X GLY 324 ? A GLY 10 11 1 Y 1 X ARG 325 ? A ARG 11 12 1 Y 1 X GLU 326 ? A GLU 12 13 1 Y 1 X ASN 327 ? A ASN 13 14 1 Y 1 X LEU 328 ? A LEU 14 15 1 Y 1 X TYR 329 ? A TYR 15 16 1 Y 1 X PHE 330 ? A PHE 16 17 1 Y 1 X ALA 362 ? A ALA 48 18 1 Y 1 X LYS 363 ? A LYS 49 19 1 Y 1 X LYS 364 ? A LYS 50 20 1 Y 1 X GLN 365 ? A GLN 51 21 1 Y 1 X ASN 366 ? A ASN 52 22 1 Y 1 X VAL 456 ? A VAL 142 23 1 Y 1 X GLU 457 ? A GLU 143 24 1 Y 1 X GLU 458 ? A GLU 144 25 1 Y 1 X GLU 459 ? A GLU 145 26 1 Y 1 X ASN 460 ? A ASN 146 27 1 Y 1 X ILE 461 ? A ILE 147 28 1 Y 1 X LYS 462 ? A LYS 148 29 1 Y 1 X TRP 463 ? A TRP 149 30 1 Y 1 X SER 464 ? A SER 150 31 1 Y 1 X LYS 465 ? A LYS 151 32 1 Y 1 X GLU 466 ? A GLU 152 33 1 Y 1 X LYS 467 ? A LYS 153 34 1 Y 1 X GLU 468 ? A GLU 154 35 1 Y 1 X ASP 469 ? A ASP 155 36 1 Y 1 X GLN 470 ? A GLN 156 37 1 Y 1 X ILE 471 ? A ILE 157 38 1 Y 1 X GLU 472 ? A GLU 158 39 1 Y 1 X GLU 473 ? A GLU 159 40 1 Y 1 X ILE 474 ? A ILE 160 41 1 Y 1 X ASP 475 ? A ASP 161 42 1 Y 1 X GLU 476 ? A GLU 162 43 1 Y 1 X LEU 477 ? A LEU 163 44 1 Y 1 X GLU 478 ? A GLU 164 45 1 Y 1 X ASN 479 ? A ASN 165 46 1 Y 1 X ASN 480 ? A ASN 166 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #