HEADER SIGNALING PROTEIN 17-DEC-08 3FKM OBSLTE 01-FEB-23 3FKM 5ULC TITLE PLASMODIUM FALCIPARUM BROMODOMAIN-CONTAINING PROTEIN PF10_0328 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNALING PROTEIN; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: UNP RESIDUES 333-480; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PF10_0328; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BROMODOMAIN, MALARIA, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,M.F.AMAYA,A.LAM,A.ALI,A.Z.ZHANG,L.KENZINA,Y.H.LIN, AUTHOR 2 F.MACKENZIE,I.KOZIERADZKI,D.COSSAR,M.SCHAPIRA,A.BOCHKAREV, AUTHOR 3 C.H.ARROWSMITH,C.BOUNTRA,J.WEIGELT,A.M.EDWARDS,R.HUI,W.QIU,V.BRAND, AUTHOR 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 01-FEB-23 3FKM 1 OBSLTE SEQADV LINK REVDAT 2 13-JUL-11 3FKM 1 VERSN REVDAT 1 13-JAN-09 3FKM 0 JRNL AUTH A.K.WERNIMONT,M.F.AMAYA,A.LAM,A.ALI,A.Z.ZHANG,L.KENZINA, JRNL AUTH 2 Y.H.LIN,F.MACKENZIE,I.KOZIERADZKI,D.COSSAR,M.SCHAPIRA, JRNL AUTH 3 A.BOCHKAREV,C.H.ARROWSMITH,C.BOUNTRA,J.WEIGELT,A.M.EDWARDS, JRNL AUTH 4 R.HUI,W.QIU,V.BRAND JRNL TITL PLASMODIUM FALCIPARUM BROMODOMAIN-CONTAINING PROTEIN JRNL TITL 2 PF10_0328 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 5764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 270 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 322 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 962 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 41.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.71000 REMARK 3 B22 (A**2) : 11.73000 REMARK 3 B33 (A**2) : -6.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.419 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.313 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.495 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 999 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1351 ; 1.463 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 124 ; 5.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ;35.330 ;26.136 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 185 ;20.025 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 150 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 738 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 446 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 711 ; 0.323 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 40 ; 0.208 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 624 ; 0.725 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 981 ; 1.085 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 434 ; 1.938 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 368 ; 2.792 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 331 X 336 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8973 24.0215 46.1933 REMARK 3 T TENSOR REMARK 3 T11: 0.2048 T22: 0.4151 REMARK 3 T33: 0.3762 T12: 0.1219 REMARK 3 T13: 0.1209 T23: 0.2238 REMARK 3 L TENSOR REMARK 3 L11: 1.1641 L22: 6.8763 REMARK 3 L33: 4.8793 L12: 2.8262 REMARK 3 L13: -1.2267 L23: -2.7455 REMARK 3 S TENSOR REMARK 3 S11: -0.1145 S12: 0.4629 S13: 0.2328 REMARK 3 S21: 0.4217 S22: 1.4524 S23: 1.4593 REMARK 3 S31: -1.0542 S32: -2.9325 S33: -1.3380 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 337 X 360 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4884 14.6326 36.0629 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.1984 REMARK 3 T33: 0.2127 T12: -0.0495 REMARK 3 T13: -0.0004 T23: -0.0659 REMARK 3 L TENSOR REMARK 3 L11: 10.4172 L22: 3.1825 REMARK 3 L33: 5.7055 L12: -2.3655 REMARK 3 L13: -5.6681 L23: 1.2371 REMARK 3 S TENSOR REMARK 3 S11: -0.0376 S12: 0.8230 S13: -0.9721 REMARK 3 S21: -0.0564 S22: -0.0857 S23: -0.2565 REMARK 3 S31: 0.5952 S32: -0.4078 S33: 0.1233 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 361 X 406 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6271 17.4076 46.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.1514 REMARK 3 T33: 0.0909 T12: -0.0278 REMARK 3 T13: 0.0292 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 12.8327 L22: 0.0854 REMARK 3 L33: 1.1585 L12: 1.0157 REMARK 3 L13: 0.2096 L23: -0.0598 REMARK 3 S TENSOR REMARK 3 S11: 0.0533 S12: -0.4953 S13: -0.7411 REMARK 3 S21: 0.1545 S22: 0.0121 S23: -0.0727 REMARK 3 S31: -0.0203 S32: 0.6023 S33: -0.0654 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 407 X 442 REMARK 3 ORIGIN FOR THE GROUP (A): 37.1509 23.1919 34.1907 REMARK 3 T TENSOR REMARK 3 T11: 0.1243 T22: 0.1302 REMARK 3 T33: -0.0112 T12: -0.0362 REMARK 3 T13: 0.0257 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.7694 L22: 1.8528 REMARK 3 L33: 3.1003 L12: -0.6694 REMARK 3 L13: -0.9129 L23: 0.4262 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: 0.1038 S13: -0.1446 REMARK 3 S21: -0.0867 S22: -0.0673 S23: 0.2496 REMARK 3 S31: -0.4147 S32: 0.0746 S33: 0.0175 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 443 X 456 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1956 37.1959 51.1768 REMARK 3 T TENSOR REMARK 3 T11: 0.8911 T22: 0.4960 REMARK 3 T33: 0.5837 T12: 0.1695 REMARK 3 T13: 0.1467 T23: -0.0788 REMARK 3 L TENSOR REMARK 3 L11: 15.4249 L22: 40.5223 REMARK 3 L33: 30.2646 L12: 2.4319 REMARK 3 L13: 5.8012 L23: 16.5579 REMARK 3 S TENSOR REMARK 3 S11: -0.3241 S12: -3.6019 S13: 0.8627 REMARK 3 S21: 2.7142 S22: -0.7266 S23: 2.2092 REMARK 3 S31: -1.2494 S32: -2.6795 S33: 1.0506 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97948 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : 0.12900 REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.17200 REMARK 200 R SYM FOR SHELL (I) : 0.16200 REMARK 200 FOR SHELL : 8.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2RJF REMARK 200 REMARK 200 REMARK: AUTHORS USED NEW PHASER VERSION THAT COMBINES SAD PHASES REMARK 200 WITH MR SOLUTIONS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 8000, 0.1 M TRIS, CHYMOTRYPSIN, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 18.80150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.13250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.24650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 18.80150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.13250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.24650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 18.80150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.13250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.24650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 18.80150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.13250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.24650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: / REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE X 315 REMARK 465 HIS X 316 REMARK 465 HIS X 317 REMARK 465 HIS X 318 REMARK 465 HIS X 319 REMARK 465 HIS X 320 REMARK 465 HIS X 321 REMARK 465 SER X 322 REMARK 465 SER X 323 REMARK 465 GLY X 324 REMARK 465 ARG X 325 REMARK 465 GLU X 326 REMARK 465 ASN X 327 REMARK 465 LEU X 328 REMARK 465 TYR X 329 REMARK 465 PHE X 330 REMARK 465 ALA X 362 REMARK 465 LYS X 363 REMARK 465 LYS X 364 REMARK 465 GLN X 365 REMARK 465 ASN X 366 REMARK 465 VAL X 456 REMARK 465 GLU X 457 REMARK 465 GLU X 458 REMARK 465 GLU X 459 REMARK 465 ASN X 460 REMARK 465 ILE X 461 REMARK 465 LYS X 462 REMARK 465 TRP X 463 REMARK 465 SER X 464 REMARK 465 LYS X 465 REMARK 465 GLU X 466 REMARK 465 LYS X 467 REMARK 465 GLU X 468 REMARK 465 ASP X 469 REMARK 465 GLN X 470 REMARK 465 ILE X 471 REMARK 465 GLU X 472 REMARK 465 GLU X 473 REMARK 465 ILE X 474 REMARK 465 ASP X 475 REMARK 465 GLU X 476 REMARK 465 LEU X 477 REMARK 465 GLU X 478 REMARK 465 ASN X 479 REMARK 465 ASN X 480 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL X 360 CG1 CG2 REMARK 470 ASP X 361 CG OD1 OD2 REMARK 470 LYS X 448 CG CD CE NZ REMARK 470 ASP X 451 CG OD1 OD2 REMARK 470 MSE X 452 CE REMARK 470 LYS X 454 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 23 O HOH X 32 1455 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU X 351 113.70 -38.71 REMARK 500 VAL X 360 100.82 -51.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 3FKM X 333 480 UNP Q8IJ72 Q8IJ72_PLAF7 333 480 SEQADV 3FKM MSE X 315 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM HIS X 316 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM HIS X 317 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM HIS X 318 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM HIS X 319 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM HIS X 320 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM HIS X 321 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM SER X 322 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM SER X 323 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM GLY X 324 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM ARG X 325 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM GLU X 326 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM ASN X 327 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM LEU X 328 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM TYR X 329 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM PHE X 330 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM GLN X 331 UNP Q8IJ72 EXPRESSION TAG SEQADV 3FKM GLY X 332 UNP Q8IJ72 EXPRESSION TAG SEQRES 1 X 166 MSE HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 X 166 LEU TYR PHE GLN GLY ASN LYS GLN TRP TYR LEU LEU ALA SEQRES 3 X 166 ASN GLN LEU ILE LEU SER LEU SER LYS TYR GLU GLY GLY SEQRES 4 X 166 HIS ILE PHE GLU LYS LEU VAL ASP ALA LYS LYS GLN ASN SEQRES 5 X 166 CYS PRO ASP TYR TYR ASP VAL ILE LYS ASN PRO MSE SER SEQRES 6 X 166 PHE SER CYS ILE LYS THR LYS LEU LYS LYS GLY GLN TYR SEQRES 7 X 166 ALA TYR PRO SER GLU PHE VAL LYS ASP VAL GLN LEU ILE SEQRES 8 X 166 PHE ASP ASN CYS SER LEU TYR ASN THR SER ASN SER VAL SEQRES 9 X 166 VAL ALA ILE THR GLY LYS ASN ILE GLU THR TYR PHE ASN SEQRES 10 X 166 ASN GLN LEU ILE VAL MSE GLY TYR ASN ASN PHE ILE LEU SEQRES 11 X 166 LYS GLU LYS LYS ILE ASN ASP MSE LEU LYS LEU VAL GLU SEQRES 12 X 166 GLU GLU ASN ILE LYS TRP SER LYS GLU LYS GLU ASP GLN SEQRES 13 X 166 ILE GLU GLU ILE ASP GLU LEU GLU ASN ASN MODRES 3FKM MSE X 378 MET SELENOMETHIONINE MODRES 3FKM MSE X 437 MET SELENOMETHIONINE MODRES 3FKM MSE X 452 MET SELENOMETHIONINE HET MSE X 378 8 HET MSE X 437 8 HET MSE X 452 7 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 HOH *28(H2 O) HELIX 1 1 ASN X 333 SER X 348 1 16 HELIX 2 2 GLY X 352 GLU X 357 5 6 HELIX 3 3 ASP X 369 VAL X 373 5 5 HELIX 4 4 SER X 379 GLY X 390 1 12 HELIX 5 5 TYR X 394 TYR X 412 1 19 HELIX 6 6 SER X 417 MSE X 437 1 21 HELIX 7 7 GLY X 438 LYS X 454 1 17 LINK C PRO X 377 N MSE X 378 1555 1555 1.33 LINK C MSE X 378 N SER X 379 1555 1555 1.33 LINK C VAL X 436 N MSE X 437 1555 1555 1.33 LINK C MSE X 437 N GLY X 438 1555 1555 1.33 LINK C ASP X 451 N MSE X 452 1555 1555 1.32 LINK C MSE X 452 N LEU X 453 1555 1555 1.34 CRYST1 37.603 88.265 106.493 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026594 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009390 0.00000