HEADER LYASE 17-DEC-08 3FKR TITLE STRUCTURE OF L-2-KETO-3-DEOXYARABONATE DEHYDRATASE COMPLEX WITH TITLE 2 PYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-2-KETO-3-DEOXYARABONATE DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOSPIRILLUM BRASILENSE; SOURCE 3 ORGANISM_TAXID: 192; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DHDPS/NAL FAMILY, COMPLEX, PYRUVATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SHIMADA,B.MIKAMI REVDAT 2 01-NOV-17 3FKR 1 REMARK REVDAT 1 02-FEB-10 3FKR 0 JRNL AUTH N.SHIMADA,B.MIKAMI,S.WATANABE,T.KODAKI,K.MAKINO JRNL TITL STRUCTURAL ANALYSIS OF L -2-KETO-3-DEOXYARABONATE JRNL TITL 2 DEHYDRATASE AN ENZYME INVOLVED IN AN ALTERNATIVE BACTERIAL JRNL TITL 3 PATHWAY OF L-ARABINOSE METABOLISM IN COMPLEX WITH PYRUVATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 69759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9979 - 5.1961 0.98 2825 152 0.2314 0.2470 REMARK 3 2 5.1961 - 4.1532 0.95 2601 151 0.2028 0.2258 REMARK 3 3 4.1532 - 3.6367 0.98 2669 142 0.2033 0.2316 REMARK 3 4 3.6367 - 3.3081 0.99 2684 130 0.2003 0.2295 REMARK 3 5 3.3081 - 3.0732 0.99 2702 127 0.1974 0.2407 REMARK 3 6 3.0732 - 2.8934 1.00 2678 163 0.2045 0.2270 REMARK 3 7 2.8934 - 2.7494 1.00 2634 153 0.2027 0.2588 REMARK 3 8 2.7494 - 2.6304 1.00 2671 128 0.1907 0.2058 REMARK 3 9 2.6304 - 2.5296 1.00 2682 146 0.1741 0.2127 REMARK 3 10 2.5296 - 2.4427 1.00 2648 153 0.1790 0.2377 REMARK 3 11 2.4427 - 2.3666 1.00 2655 122 0.1816 0.1977 REMARK 3 12 2.3666 - 2.2992 1.00 2651 146 0.1762 0.2524 REMARK 3 13 2.2992 - 2.2389 1.00 2667 150 0.1730 0.2148 REMARK 3 14 2.2389 - 2.1844 1.00 2617 140 0.1689 0.2274 REMARK 3 15 2.1844 - 2.1349 1.00 2630 139 0.1732 0.2281 REMARK 3 16 2.1349 - 2.0896 1.00 2655 139 0.1657 0.2405 REMARK 3 17 2.0896 - 2.0479 1.00 2658 131 0.1741 0.2313 REMARK 3 18 2.0479 - 2.0094 1.00 2680 131 0.1710 0.2293 REMARK 3 19 2.0094 - 1.9736 1.00 2585 159 0.1744 0.2196 REMARK 3 20 1.9736 - 1.9402 1.00 2645 125 0.1758 0.2360 REMARK 3 21 1.9402 - 1.9089 1.00 2666 122 0.1763 0.2373 REMARK 3 22 1.9089 - 1.8796 1.00 2640 134 0.1845 0.2522 REMARK 3 23 1.8796 - 1.8520 1.00 2625 147 0.1827 0.2452 REMARK 3 24 1.8520 - 1.8260 1.00 2641 140 0.1866 0.2678 REMARK 3 25 1.8260 - 1.8014 0.93 2431 149 0.1963 0.2672 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 56.64 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.10800 REMARK 3 B22 (A**2) : 3.10800 REMARK 3 B33 (A**2) : -6.21600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.025 4959 REMARK 3 ANGLE : 2.047 6777 REMARK 3 CHIRALITY : 0.138 747 REMARK 3 PLANARITY : 0.010 901 REMARK 3 DIHEDRAL : 19.130 1851 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : PROCESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70047 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SUPERPOSION OF NATIVE PROTEIN REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.84233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 137.68467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 137.68467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.84233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1109 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 12 REMARK 465 THR A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 MET B 12 REMARK 465 THR B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 SER B 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 656 O HOH A 1010 2.05 REMARK 500 O HOH B 768 O HOH B 993 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 176 CD GLU A 176 OE2 0.080 REMARK 500 GLU B 176 CD GLU B 176 OE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 36 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 267 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 36 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 LEU B 60 CB - CG - CD1 ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG B 79 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 267 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 267 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 301 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 310 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 179 -15.39 -152.92 REMARK 500 ALA A 212 14.55 81.97 REMARK 500 PHE A 232 50.91 -153.01 REMARK 500 ARG A 247 75.63 -109.59 REMARK 500 ARG A 317 45.43 -144.14 REMARK 500 ALA B 179 -16.79 -153.12 REMARK 500 ALA B 212 17.43 83.08 REMARK 500 PHE B 232 52.80 -149.64 REMARK 500 ARG B 247 76.97 -106.49 REMARK 500 ARG B 317 49.19 -142.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 409 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 184 OE2 REMARK 620 2 HOH A1087 O 86.6 REMARK 620 3 KPI A 182 O1 166.9 93.2 REMARK 620 4 GLU A 184 OE1 52.7 103.8 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 184 OE2 REMARK 620 2 HOH B1046 O 90.2 REMARK 620 3 KPI B 182 O2 162.0 90.7 REMARK 620 4 HOH B 895 O 99.7 94.2 62.3 REMARK 620 5 GLU B 184 OE1 51.4 110.6 111.8 52.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FKK RELATED DB: PDB REMARK 900 THE SAME NATIVE PROTEIN DBREF 3FKR A 12 320 UNP Q1JUQ0 Q1JUQ0_AZOBR 1 309 DBREF 3FKR B 12 320 UNP Q1JUQ0 Q1JUQ0_AZOBR 1 309 SEQADV 3FKR ASP A 36 UNP Q1JUQ0 GLU 25 CONFLICT SEQADV 3FKR ASP B 36 UNP Q1JUQ0 GLU 25 CONFLICT SEQRES 1 A 309 MET THR SER SER SER THR PRO ARG HIS ARG GLY ILE PHE SEQRES 2 A 309 PRO VAL VAL PRO THR THR PHE ALA ASP THR GLY ASP LEU SEQRES 3 A 309 ASP LEU ALA SER GLN LYS ARG ALA VAL ASP PHE MET ILE SEQRES 4 A 309 ASP ALA GLY SER ASP GLY LEU CYS ILE LEU ALA ASN PHE SEQRES 5 A 309 SER GLU GLN PHE ALA ILE THR ASP ASP GLU ARG ASP VAL SEQRES 6 A 309 LEU THR ARG THR ILE LEU GLU HIS VAL ALA GLY ARG VAL SEQRES 7 A 309 PRO VAL ILE VAL THR THR SER HIS TYR SER THR GLN VAL SEQRES 8 A 309 CYS ALA ALA ARG SER LEU ARG ALA GLN GLN LEU GLY ALA SEQRES 9 A 309 ALA MET VAL MET ALA MET PRO PRO TYR HIS GLY ALA THR SEQRES 10 A 309 PHE ARG VAL PRO GLU ALA GLN ILE PHE GLU PHE TYR ALA SEQRES 11 A 309 ARG VAL SER ASP ALA ILE ALA ILE PRO ILE MET VAL GLN SEQRES 12 A 309 ASP ALA PRO ALA SER GLY THR ALA LEU SER ALA PRO PHE SEQRES 13 A 309 LEU ALA ARG MET ALA ARG GLU ILE GLU GLN VAL ALA TYR SEQRES 14 A 309 PHE KPI ILE GLU THR PRO GLY ALA ALA ASN LYS LEU ARG SEQRES 15 A 309 GLU LEU ILE ARG LEU GLY GLY ASP ALA ILE GLU GLY PRO SEQRES 16 A 309 TRP ASP GLY GLU GLU ALA ILE THR LEU LEU ALA ASP LEU SEQRES 17 A 309 HIS ALA GLY ALA THR GLY ALA MET THR GLY GLY GLY PHE SEQRES 18 A 309 PRO ASP GLY ILE ARG PRO ILE LEU GLU ALA TRP ARG GLU SEQRES 19 A 309 GLY ARG HIS ASP ASP ALA TYR ALA ARG TYR GLN ALA TRP SEQRES 20 A 309 LEU PRO LEU ILE ASN HIS GLU ASN ARG GLN SER GLY ILE SEQRES 21 A 309 LEU THR ALA LYS ALA LEU MET ARG GLU GLY GLY VAL ILE SEQRES 22 A 309 ALA SER GLU ARG PRO ARG HIS PRO MET PRO GLU LEU HIS SEQRES 23 A 309 PRO ASP THR ARG ALA GLU LEU LEU ALA ILE ALA ARG ARG SEQRES 24 A 309 LEU ASP PRO LEU VAL LEU ARG TRP ALA HIS SEQRES 1 B 309 MET THR SER SER SER THR PRO ARG HIS ARG GLY ILE PHE SEQRES 2 B 309 PRO VAL VAL PRO THR THR PHE ALA ASP THR GLY ASP LEU SEQRES 3 B 309 ASP LEU ALA SER GLN LYS ARG ALA VAL ASP PHE MET ILE SEQRES 4 B 309 ASP ALA GLY SER ASP GLY LEU CYS ILE LEU ALA ASN PHE SEQRES 5 B 309 SER GLU GLN PHE ALA ILE THR ASP ASP GLU ARG ASP VAL SEQRES 6 B 309 LEU THR ARG THR ILE LEU GLU HIS VAL ALA GLY ARG VAL SEQRES 7 B 309 PRO VAL ILE VAL THR THR SER HIS TYR SER THR GLN VAL SEQRES 8 B 309 CYS ALA ALA ARG SER LEU ARG ALA GLN GLN LEU GLY ALA SEQRES 9 B 309 ALA MET VAL MET ALA MET PRO PRO TYR HIS GLY ALA THR SEQRES 10 B 309 PHE ARG VAL PRO GLU ALA GLN ILE PHE GLU PHE TYR ALA SEQRES 11 B 309 ARG VAL SER ASP ALA ILE ALA ILE PRO ILE MET VAL GLN SEQRES 12 B 309 ASP ALA PRO ALA SER GLY THR ALA LEU SER ALA PRO PHE SEQRES 13 B 309 LEU ALA ARG MET ALA ARG GLU ILE GLU GLN VAL ALA TYR SEQRES 14 B 309 PHE KPI ILE GLU THR PRO GLY ALA ALA ASN LYS LEU ARG SEQRES 15 B 309 GLU LEU ILE ARG LEU GLY GLY ASP ALA ILE GLU GLY PRO SEQRES 16 B 309 TRP ASP GLY GLU GLU ALA ILE THR LEU LEU ALA ASP LEU SEQRES 17 B 309 HIS ALA GLY ALA THR GLY ALA MET THR GLY GLY GLY PHE SEQRES 18 B 309 PRO ASP GLY ILE ARG PRO ILE LEU GLU ALA TRP ARG GLU SEQRES 19 B 309 GLY ARG HIS ASP ASP ALA TYR ALA ARG TYR GLN ALA TRP SEQRES 20 B 309 LEU PRO LEU ILE ASN HIS GLU ASN ARG GLN SER GLY ILE SEQRES 21 B 309 LEU THR ALA LYS ALA LEU MET ARG GLU GLY GLY VAL ILE SEQRES 22 B 309 ALA SER GLU ARG PRO ARG HIS PRO MET PRO GLU LEU HIS SEQRES 23 B 309 PRO ASP THR ARG ALA GLU LEU LEU ALA ILE ALA ARG ARG SEQRES 24 B 309 LEU ASP PRO LEU VAL LEU ARG TRP ALA HIS MODRES 3FKR KPI A 182 LYS MODRES 3FKR KPI B 182 LYS HET KPI A 182 14 HET KPI B 182 14 HET PO4 A 401 5 HET PO4 A 404 5 HET PO4 A 405 5 HET NA A 409 1 HET PO4 B 402 5 HET PO4 B 403 5 HET PO4 B 406 5 HET PO4 B 407 5 HET NA B 408 1 HETNAM KPI (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE) HETNAM 2 KPI AMINO]HEXANOIC ACID HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION FORMUL 1 KPI 2(C9 H16 N2 O4) FORMUL 3 PO4 7(O4 P 3-) FORMUL 6 NA 2(NA 1+) FORMUL 12 HOH *602(H2 O) HELIX 1 1 ASP A 38 ALA A 52 1 15 HELIX 2 2 ALA A 61 ILE A 69 5 9 HELIX 3 3 THR A 70 ALA A 86 1 17 HELIX 4 4 SER A 99 LEU A 113 1 15 HELIX 5 5 PRO A 132 ILE A 147 1 16 HELIX 6 6 ALA A 156 GLY A 160 5 5 HELIX 7 7 SER A 164 ILE A 175 1 12 HELIX 8 8 GLY A 187 GLY A 200 1 14 HELIX 9 9 ASP A 201 ILE A 203 5 3 HELIX 10 10 GLU A 210 ILE A 213 5 4 HELIX 11 11 THR A 214 ALA A 221 1 8 HELIX 12 12 PHE A 232 GLU A 245 1 14 HELIX 13 13 ARG A 247 GLN A 268 1 22 HELIX 14 14 SER A 269 ILE A 271 5 3 HELIX 15 15 LEU A 272 GLY A 281 1 10 HELIX 16 16 HIS A 297 ASP A 312 1 16 HELIX 17 17 PRO A 313 ARG A 317 5 5 HELIX 18 18 ASP B 38 ALA B 52 1 15 HELIX 19 19 ALA B 61 ILE B 69 5 9 HELIX 20 20 THR B 70 ALA B 86 1 17 HELIX 21 21 SER B 99 LEU B 113 1 15 HELIX 22 22 PRO B 132 ILE B 147 1 16 HELIX 23 23 ALA B 156 GLY B 160 5 5 HELIX 24 24 SER B 164 ILE B 175 1 12 HELIX 25 25 GLY B 187 GLY B 200 1 14 HELIX 26 26 ASP B 201 ILE B 203 5 3 HELIX 27 27 GLU B 210 ILE B 213 5 4 HELIX 28 28 THR B 214 ALA B 221 1 8 HELIX 29 29 PHE B 232 GLU B 245 1 14 HELIX 30 30 ARG B 247 GLN B 268 1 22 HELIX 31 31 SER B 269 ILE B 271 5 3 HELIX 32 32 LEU B 272 GLY B 281 1 10 HELIX 33 33 HIS B 297 ASP B 312 1 16 HELIX 34 34 PRO B 313 ARG B 317 5 5 SHEET 1 A 8 GLY A 22 ILE A 23 0 SHEET 2 A 8 GLY A 225 ALA A 226 1 O ALA A 226 N GLY A 22 SHEET 3 A 8 GLY A 205 ASP A 208 1 N ASP A 208 O GLY A 225 SHEET 4 A 8 VAL A 178 ILE A 183 1 N ILE A 183 O TRP A 207 SHEET 5 A 8 ILE A 151 ASP A 155 1 N VAL A 153 O KPI A 182 SHEET 6 A 8 MET A 117 ALA A 120 1 N VAL A 118 O MET A 152 SHEET 7 A 8 VAL A 91 THR A 94 1 N VAL A 93 O MET A 117 SHEET 8 A 8 LEU A 57 ILE A 59 1 N LEU A 57 O ILE A 92 SHEET 1 B 8 GLY B 22 ILE B 23 0 SHEET 2 B 8 GLY B 225 ALA B 226 1 O ALA B 226 N GLY B 22 SHEET 3 B 8 GLY B 205 ASP B 208 1 N ASP B 208 O GLY B 225 SHEET 4 B 8 VAL B 178 ILE B 183 1 N PHE B 181 O GLY B 205 SHEET 5 B 8 ILE B 151 ASP B 155 1 N ASP B 155 O KPI B 182 SHEET 6 B 8 MET B 117 ALA B 120 1 N VAL B 118 O MET B 152 SHEET 7 B 8 VAL B 91 THR B 94 1 N VAL B 93 O MET B 117 SHEET 8 B 8 LEU B 57 ILE B 59 1 N LEU B 57 O ILE B 92 LINK C PHE A 181 N KPI A 182 1555 1555 1.33 LINK C KPI A 182 N ILE A 183 1555 1555 1.34 LINK C PHE B 181 N KPI B 182 1555 1555 1.32 LINK C KPI B 182 N ILE B 183 1555 1555 1.35 LINK OE2 GLU A 184 NA NA A 409 1555 1555 2.04 LINK OE2 GLU B 184 NA NA B 408 1555 1555 2.11 LINK NA NA B 408 O HOH B1046 1555 1555 2.31 LINK NA NA A 409 O HOH A1087 1555 1555 2.36 LINK O1 KPI A 182 NA NA A 409 1555 1555 2.38 LINK O2 KPI B 182 NA NA B 408 1555 1555 2.41 LINK OE1 GLU A 184 NA NA A 409 1555 1555 2.71 LINK NA NA B 408 O HOH B 895 1555 1555 2.73 LINK OE1 GLU B 184 NA NA B 408 1555 1555 2.78 CISPEP 1 HIS A 291 PRO A 292 0 13.67 CISPEP 2 HIS B 291 PRO B 292 0 10.50 SITE 1 AC1 9 HIS A 220 GLU A 303 ALA A 306 ARG A 310 SITE 2 AC1 9 HOH A 694 HOH A 820 HOH A 858 HOH A 944 SITE 3 AC1 9 HOH A1047 SITE 1 AC2 11 GLU A 184 THR A 185 GLY A 187 ALA A 188 SITE 2 AC2 11 GLU A 210 THR A 214 ARG A 267 HOH A 510 SITE 3 AC2 11 HOH A 513 HOH A 695 HOH A 816 SITE 1 AC3 9 ARG A 288 PRO A 289 HIS A 291 MET A 293 SITE 2 AC3 9 GLU A 295 HOH A 566 HOH A 623 HOH A 958 SITE 3 AC3 9 HOH A1114 SITE 1 AC4 3 KPI A 182 GLU A 184 HOH A1087 SITE 1 AC5 7 HIS B 220 ALA B 306 ARG B 310 HOH B 756 SITE 2 AC5 7 HOH B 786 HOH B 853 HOH B1001 SITE 1 AC6 11 GLU B 184 THR B 185 GLY B 187 ALA B 188 SITE 2 AC6 11 GLU B 210 THR B 214 ARG B 267 HOH B 567 SITE 3 AC6 11 HOH B 591 HOH B 636 HOH B 872 SITE 1 AC7 4 ARG B 44 ASP B 47 HOH B 724 HOH B1091 SITE 1 AC8 6 ASP A 312 ARG A 317 ASP B 234 ARG B 317 SITE 2 AC8 6 HOH B 646 HOH B1026 SITE 1 AC9 4 KPI B 182 GLU B 184 HOH B 895 HOH B1046 CRYST1 79.259 79.259 206.527 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012617 0.007284 0.000000 0.00000 SCALE2 0.000000 0.014569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004842 0.00000