data_3FL1 # _entry.id 3FL1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FL1 pdb_00003fl1 10.2210/pdb3fl1/pdb RCSB RCSB050720 ? ? WWPDB D_1000050720 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1TQ9 ;Non-covalent swapped dimer of Bovine Seminal Ribonuclease in complex with 2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE-3',5'-MONOPHOSPHATE ; unspecified PDB 3BCP 'Crystal Structure of the swapped non covalent form of P19A/L28Q/N67D BS-RNase' unspecified PDB 1BSR 'Bovine seminal ribonuclease structure at 1.9 angstroms resolution' unspecified PDB 1A2W 'Crystal structure of a 3D domain-swapped dimer of RNase A' unspecified PDB 1H8X 'Domain-swapped dimer of a human pancreatic ribonuclease variant' unspecified PDB 3FKZ 'X-ray structure of the non covalent swapped form of the S16G/T17N/A19P/A20S/K31C/S32C mutant of bovine pancreatic ribonuclease' unspecified PDB 3FL0 ;X-ray structure of the non covalent swapped form of the Q28L/K31C/S32C mutant of bovine pancreatic ribonuclease in complex with 2'-deoxycytidine-2'-deoxyguanosine-3',5'-monophosphate ; unspecified PDB 3FL3 'X-ray structure of the ligand free non covalent swapped form of the A19P/Q28L/K31C/S32C mutant of bovine pancreatic ribonuclease' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FL1 _pdbx_database_status.recvd_initial_deposition_date 2008-12-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Merlino, A.' 1 'Russo Krauss, I.' 2 'Perillo, M.' 3 'Mattia, C.A.' 4 'Ercole, C.' 5 'Picone, D.' 6 'Vergara, A.' 7 'Sica, F.' 8 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Toward an antitumor form of bovine pancreatic ribonuclease: The crystal structure of three noncovalent dimeric mutants' Biopolymers 91 1029 1037 2009 BIPMAA US 0006-3525 0161 ? 19280639 10.1002/bip.21183 1 ;Structure and stability of the non-covalent swapped dimer of bovine seminal ribonuclease: an enzyme tailored to evade ribonuclease protein inhibitor ; J.Biol.Chem. 279 36753 36760 2004 JBCHA3 US 0021-9258 0071 ? 15192098 10.1074/jbc.M405655200 2 'The buried diversity of bovine seminal ribonuclease: shape and cytotoxicity of the swapped non-covalent form of the enzyme' J.Mol.Biol. 376 427 437 2008 JMOBAK UK 0022-2836 0070 ? 18164315 10.1016/j.jmb.2007.11.008 3 'Hints on the evolutionary design of a dimeric RNase with special bioactions' 'Protein Sci.' 4 1470 1477 1995 PRCIEI US 0961-8368 0795 ? 8520472 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Merlino, A.' 1 ? primary 'Russo Krauss, I.' 2 ? primary 'Perillo, M.' 3 ? primary 'Mattia, C.A.' 4 ? primary 'Ercole, C.' 5 ? primary 'Picone, D.' 6 ? primary 'Vergara, A.' 7 ? primary 'Sica, F.' 8 ? 1 'Sica, F.' 9 ? 1 'Di Fiore, A.' 10 ? 1 'Merlino, A.' 11 ? 1 'Mazzarella, L.' 12 ? 2 'Merlino, A.' 13 ? 2 'Ercole, C.' 14 ? 2 'Picone, D.' 15 ? 2 'Pizzo, E.' 16 ? 2 'Mazzarella, L.' 17 ? 2 'Sica, F.' 18 ? 3 'Di Donato, A.' 19 ? 3 'Cafaro, V.' 20 ? 3 'Romeo, I.' 21 ? 3 ;D'Alessio, G. ; 22 ? # _cell.entry_id 3FL1 _cell.length_a 37.530 _cell.length_b 65.130 _cell.length_c 55.270 _cell.angle_alpha 90.00 _cell.angle_beta 96.33 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FL1 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonuclease pancreatic' 13823.522 2 3.1.27.5 'A19P, Q28L, K31C, S32C' ? ? 2 branched man 'alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose' 342.297 1 ? ? ? ? 3 non-polymer syn "2'-DEOXYCYTIDINE-2'-DEOXYGUANOSINE-3',5'-MONOPHOSPHATE" 556.423 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 210 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'ribonuclease, RNase 1, RNase A' 2 trehalose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;KETAAAKFERQHMDSSTSPASSSNYCNLMM(YCM)(YCM)RNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNC YQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV ; _entity_poly.pdbx_seq_one_letter_code_can ;KETAAAKFERQHMDSSTSPASSSNYCNLMMCCRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 GLU n 1 3 THR n 1 4 ALA n 1 5 ALA n 1 6 ALA n 1 7 LYS n 1 8 PHE n 1 9 GLU n 1 10 ARG n 1 11 GLN n 1 12 HIS n 1 13 MET n 1 14 ASP n 1 15 SER n 1 16 SER n 1 17 THR n 1 18 SER n 1 19 PRO n 1 20 ALA n 1 21 SER n 1 22 SER n 1 23 SER n 1 24 ASN n 1 25 TYR n 1 26 CYS n 1 27 ASN n 1 28 LEU n 1 29 MET n 1 30 MET n 1 31 YCM n 1 32 YCM n 1 33 ARG n 1 34 ASN n 1 35 LEU n 1 36 THR n 1 37 LYS n 1 38 ASP n 1 39 ARG n 1 40 CYS n 1 41 LYS n 1 42 PRO n 1 43 VAL n 1 44 ASN n 1 45 THR n 1 46 PHE n 1 47 VAL n 1 48 HIS n 1 49 GLU n 1 50 SER n 1 51 LEU n 1 52 ALA n 1 53 ASP n 1 54 VAL n 1 55 GLN n 1 56 ALA n 1 57 VAL n 1 58 CYS n 1 59 SER n 1 60 GLN n 1 61 LYS n 1 62 ASN n 1 63 VAL n 1 64 ALA n 1 65 CYS n 1 66 LYS n 1 67 ASN n 1 68 GLY n 1 69 GLN n 1 70 THR n 1 71 ASN n 1 72 CYS n 1 73 TYR n 1 74 GLN n 1 75 SER n 1 76 TYR n 1 77 SER n 1 78 THR n 1 79 MET n 1 80 SER n 1 81 ILE n 1 82 THR n 1 83 ASP n 1 84 CYS n 1 85 ARG n 1 86 GLU n 1 87 THR n 1 88 GLY n 1 89 SER n 1 90 SER n 1 91 LYS n 1 92 TYR n 1 93 PRO n 1 94 ASN n 1 95 CYS n 1 96 ALA n 1 97 TYR n 1 98 LYS n 1 99 THR n 1 100 THR n 1 101 GLN n 1 102 ALA n 1 103 ASN n 1 104 LYS n 1 105 HIS n 1 106 ILE n 1 107 ILE n 1 108 VAL n 1 109 ALA n 1 110 CYS n 1 111 GLU n 1 112 GLY n 1 113 ASN n 1 114 PRO n 1 115 TYR n 1 116 VAL n 1 117 PRO n 1 118 VAL n 1 119 HIS n 1 120 PHE n 1 121 ASP n 1 122 ALA n 1 123 SER n 1 124 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Bovine _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'RNASE1, RNS1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bos taurus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9913 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET22b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RNAS1_BOVIN _struct_ref.pdbx_db_accession P61823 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV ; _struct_ref.pdbx_align_begin 27 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FL1 A 1 ? 124 ? P61823 27 ? 150 ? 1 124 2 1 3FL1 B 1 ? 124 ? P61823 27 ? 150 ? 1 124 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FL1 PRO A 19 ? UNP P61823 ALA 45 'engineered mutation' 19 1 1 3FL1 LEU A 28 ? UNP P61823 GLN 54 'engineered mutation' 28 2 1 3FL1 YCM A 31 ? UNP P61823 LYS 57 'engineered mutation' 31 3 1 3FL1 YCM A 32 ? UNP P61823 SER 58 'engineered mutation' 32 4 2 3FL1 PRO B 19 ? UNP P61823 ALA 45 'engineered mutation' 19 5 2 3FL1 LEU B 28 ? UNP P61823 GLN 54 'engineered mutation' 28 6 2 3FL1 YCM B 31 ? UNP P61823 LYS 57 'engineered mutation' 31 7 2 3FL1 YCM B 32 ? UNP P61823 SER 58 'engineered mutation' 32 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CGP non-polymer . "2'-DEOXYCYTIDINE-2'-DEOXYGUANOSINE-3',5'-MONOPHOSPHATE" ? 'C19 H25 N8 O10 P' 556.423 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose 'alpha-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YCM 'L-peptide linking' n 'S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE' CYSTEINE-S-ACETAMIDE 'C5 H10 N2 O3 S' 178.209 # _exptl.entry_id 3FL1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 49.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '26% PEG 4000, 0.2M ammonium sulfate, 0.1M Tris/HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944' _diffrn_detector.pdbx_collection_date 2006-07-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3FL1 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 1.90 _reflns.number_obs 20953 _reflns.number_all 20953 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.96 _reflns_shell.percent_possible_all 97.2 _reflns_shell.Rmerge_I_obs 0.342 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3FL1 _refine.ls_number_reflns_obs 18705 _refine.ls_number_reflns_all 19958 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.79 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.179 _refine.ls_R_factor_all 0.202 _refine.ls_R_factor_R_work 0.175 _refine.ls_R_factor_R_free 0.223 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1826 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1KF3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1892 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 210 _refine_hist.number_atoms_total 2152 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 26.79 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.028 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.29 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 3FL1 _struct.title ;X-ray structure of the non covalent swapped form of the A19P/Q28L/K31C/S32C mutant of bovine pancreatic ribonuclease in complex with 2'-DEOXYCYTIDINE-2'-DEOXYGUANOSINE-3',5'-MONOPHOSPHATE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FL1 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;3D-domain swapping, bovine seminal ribonuclease, non-covalent dimer, antitumor activity, quaternary structure flexibility, protein mutations and evolution, Endonuclease, Glycation, Glycoprotein, Hydrolase, Nuclease, Secreted ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 3 ? MET A 13 ? THR A 3 MET A 13 1 ? 11 HELX_P HELX_P2 2 ASN A 24 ? ARG A 33 ? ASN A 24 ARG A 33 1 ? 10 HELX_P HELX_P3 3 SER A 50 ? VAL A 57 ? SER A 50 VAL A 57 1 ? 8 HELX_P HELX_P4 4 CYS A 58 ? GLN A 60 ? CYS A 58 GLN A 60 5 ? 3 HELX_P HELX_P5 5 THR B 3 ? MET B 13 ? THR B 3 MET B 13 1 ? 11 HELX_P HELX_P6 6 SER B 21 ? SER B 23 ? SER B 21 SER B 23 5 ? 3 HELX_P HELX_P7 7 ASN B 24 ? ARG B 33 ? ASN B 24 ARG B 33 1 ? 10 HELX_P HELX_P8 8 SER B 50 ? ALA B 56 ? SER B 50 ALA B 56 1 ? 7 HELX_P HELX_P9 9 VAL B 57 ? GLN B 60 ? VAL B 57 GLN B 60 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 84 SG ? ? A CYS 26 A CYS 84 1_555 ? ? ? ? ? ? ? 2.015 ? ? disulf2 disulf ? ? A CYS 40 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 40 A CYS 95 1_555 ? ? ? ? ? ? ? 2.011 ? ? disulf3 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 110 SG ? ? A CYS 58 A CYS 110 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf4 disulf ? ? A CYS 65 SG ? ? ? 1_555 A CYS 72 SG ? ? A CYS 65 A CYS 72 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf5 disulf ? ? B CYS 26 SG ? ? ? 1_555 B CYS 84 SG ? ? B CYS 26 B CYS 84 1_555 ? ? ? ? ? ? ? 2.016 ? ? disulf6 disulf ? ? B CYS 40 SG ? ? ? 1_555 B CYS 95 SG ? ? B CYS 40 B CYS 95 1_555 ? ? ? ? ? ? ? 2.049 ? ? disulf7 disulf ? ? B CYS 58 SG ? ? ? 1_555 B CYS 110 SG ? ? B CYS 58 B CYS 110 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf8 disulf ? ? B CYS 65 SG ? ? ? 1_555 B CYS 72 SG ? ? B CYS 65 B CYS 72 1_555 ? ? ? ? ? ? ? 2.042 ? ? covale1 covale both ? A MET 30 C ? ? ? 1_555 A YCM 31 N ? ? A MET 30 A YCM 31 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale2 covale both ? A YCM 31 C ? ? ? 1_555 A YCM 32 N ? ? A YCM 31 A YCM 32 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? A YCM 32 C ? ? ? 1_555 A ARG 33 N ? ? A YCM 32 A ARG 33 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale4 covale both ? B MET 30 C ? ? ? 1_555 B YCM 31 N ? ? B MET 30 B YCM 31 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? B YCM 31 C ? ? ? 1_555 B YCM 32 N ? ? B YCM 31 B YCM 32 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale6 covale both ? B YCM 32 C ? ? ? 1_555 B ARG 33 N ? ? B YCM 32 B ARG 33 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale7 covale both ? C GLC . C1 ? ? ? 1_555 C GLC . O1 ? ? C GLC 1 C GLC 2 1_555 ? ? ? ? ? ? ? 1.438 sing ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 92 A . ? TYR 92 A PRO 93 A ? PRO 93 A 1 0.85 2 ASN 113 A . ? ASN 113 A PRO 114 A ? PRO 114 A 1 -0.05 3 TYR 92 B . ? TYR 92 B PRO 93 B ? PRO 93 B 1 -0.20 4 ASN 113 B . ? ASN 113 B PRO 114 B ? PRO 114 B 1 0.18 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 5 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 43 ? VAL A 47 ? VAL A 43 VAL A 47 A 2 MET A 79 ? GLU A 86 ? MET A 79 GLU A 86 A 3 TYR A 97 ? GLU A 111 ? TYR A 97 GLU A 111 A 4 CYS A 72 ? GLN A 74 ? CYS A 72 GLN A 74 A 5 LYS A 61 ? VAL A 63 ? LYS A 61 VAL A 63 B 1 VAL A 43 ? VAL A 47 ? VAL A 43 VAL A 47 B 2 MET A 79 ? GLU A 86 ? MET A 79 GLU A 86 B 3 TYR A 97 ? GLU A 111 ? TYR A 97 GLU A 111 B 4 VAL A 116 ? VAL A 124 ? VAL A 116 VAL A 124 C 1 VAL B 43 ? VAL B 47 ? VAL B 43 VAL B 47 C 2 MET B 79 ? GLU B 86 ? MET B 79 GLU B 86 C 3 TYR B 97 ? GLU B 111 ? TYR B 97 GLU B 111 C 4 CYS B 72 ? GLN B 74 ? CYS B 72 GLN B 74 C 5 LYS B 61 ? VAL B 63 ? LYS B 61 VAL B 63 D 1 VAL B 43 ? VAL B 47 ? VAL B 43 VAL B 47 D 2 MET B 79 ? GLU B 86 ? MET B 79 GLU B 86 D 3 TYR B 97 ? GLU B 111 ? TYR B 97 GLU B 111 D 4 VAL B 116 ? VAL B 124 ? VAL B 116 VAL B 124 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 44 ? N ASN A 44 O CYS A 84 ? O CYS A 84 A 2 3 N ARG A 85 ? N ARG A 85 O LYS A 98 ? O LYS A 98 A 3 4 O VAL A 108 ? O VAL A 108 N TYR A 73 ? N TYR A 73 A 4 5 O GLN A 74 ? O GLN A 74 N LYS A 61 ? N LYS A 61 B 1 2 N ASN A 44 ? N ASN A 44 O CYS A 84 ? O CYS A 84 B 2 3 N ARG A 85 ? N ARG A 85 O LYS A 98 ? O LYS A 98 B 3 4 N HIS A 105 ? N HIS A 105 O VAL A 124 ? O VAL A 124 C 1 2 N PHE B 46 ? N PHE B 46 O THR B 82 ? O THR B 82 C 2 3 N ARG B 85 ? N ARG B 85 O LYS B 98 ? O LYS B 98 C 3 4 O VAL B 108 ? O VAL B 108 N TYR B 73 ? N TYR B 73 C 4 5 O GLN B 74 ? O GLN B 74 N LYS B 61 ? N LYS B 61 D 1 2 N PHE B 46 ? N PHE B 46 O THR B 82 ? O THR B 82 D 2 3 N ARG B 85 ? N ARG B 85 O LYS B 98 ? O LYS B 98 D 3 4 N ALA B 109 ? N ALA B 109 O VAL B 118 ? O VAL B 118 # _database_PDB_matrix.entry_id 3FL1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FL1 _atom_sites.fract_transf_matrix[1][1] 0.02665 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00296 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01535 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01820 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 MET 13 13 13 MET MET A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 THR 17 17 ? ? ? A . n A 1 18 SER 18 18 ? ? ? A . n A 1 19 PRO 19 19 ? ? ? A . n A 1 20 ALA 20 20 ? ? ? A . n A 1 21 SER 21 21 ? ? ? A . n A 1 22 SER 22 22 ? ? ? A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 YCM 31 31 31 YCM YCM A . n A 1 32 YCM 32 32 32 YCM YCM A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 HIS 48 48 48 HIS HIS A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 GLN 55 55 55 GLN GLN A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 CYS 58 58 58 CYS CYS A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 CYS 65 65 65 CYS CYS A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 CYS 72 72 72 CYS CYS A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 CYS 84 84 84 CYS CYS A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 CYS 110 110 110 CYS CYS A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 VAL 124 124 124 VAL VAL A . n B 1 1 LYS 1 1 1 LYS LYS B . n B 1 2 GLU 2 2 2 GLU GLU B . n B 1 3 THR 3 3 3 THR THR B . n B 1 4 ALA 4 4 4 ALA ALA B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 ALA 6 6 6 ALA ALA B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 PHE 8 8 8 PHE PHE B . n B 1 9 GLU 9 9 9 GLU GLU B . n B 1 10 ARG 10 10 10 ARG ARG B . n B 1 11 GLN 11 11 11 GLN GLN B . n B 1 12 HIS 12 12 12 HIS HIS B . n B 1 13 MET 13 13 13 MET MET B . n B 1 14 ASP 14 14 14 ASP ASP B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 SER 16 16 16 SER SER B . n B 1 17 THR 17 17 17 THR THR B . n B 1 18 SER 18 18 18 SER SER B . n B 1 19 PRO 19 19 19 PRO PRO B . n B 1 20 ALA 20 20 20 ALA ALA B . n B 1 21 SER 21 21 21 SER SER B . n B 1 22 SER 22 22 22 SER SER B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 ASN 24 24 24 ASN ASN B . n B 1 25 TYR 25 25 25 TYR TYR B . n B 1 26 CYS 26 26 26 CYS CYS B . n B 1 27 ASN 27 27 27 ASN ASN B . n B 1 28 LEU 28 28 28 LEU LEU B . n B 1 29 MET 29 29 29 MET MET B . n B 1 30 MET 30 30 30 MET MET B . n B 1 31 YCM 31 31 31 YCM YCM B . n B 1 32 YCM 32 32 32 YCM YCM B . n B 1 33 ARG 33 33 33 ARG ARG B . n B 1 34 ASN 34 34 34 ASN ASN B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 THR 36 36 36 THR THR B . n B 1 37 LYS 37 37 37 LYS LYS B . n B 1 38 ASP 38 38 38 ASP ASP B . n B 1 39 ARG 39 39 39 ARG ARG B . n B 1 40 CYS 40 40 40 CYS CYS B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 PRO 42 42 42 PRO PRO B . n B 1 43 VAL 43 43 43 VAL VAL B . n B 1 44 ASN 44 44 44 ASN ASN B . n B 1 45 THR 45 45 45 THR THR B . n B 1 46 PHE 46 46 46 PHE PHE B . n B 1 47 VAL 47 47 47 VAL VAL B . n B 1 48 HIS 48 48 48 HIS HIS B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 SER 50 50 50 SER SER B . n B 1 51 LEU 51 51 51 LEU LEU B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 ASP 53 53 53 ASP ASP B . n B 1 54 VAL 54 54 54 VAL VAL B . n B 1 55 GLN 55 55 55 GLN GLN B . n B 1 56 ALA 56 56 56 ALA ALA B . n B 1 57 VAL 57 57 57 VAL VAL B . n B 1 58 CYS 58 58 58 CYS CYS B . n B 1 59 SER 59 59 59 SER SER B . n B 1 60 GLN 60 60 60 GLN GLN B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 ASN 62 62 62 ASN ASN B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 ALA 64 64 64 ALA ALA B . n B 1 65 CYS 65 65 65 CYS CYS B . n B 1 66 LYS 66 66 66 LYS LYS B . n B 1 67 ASN 67 67 67 ASN ASN B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 GLN 69 69 69 GLN GLN B . n B 1 70 THR 70 70 70 THR THR B . n B 1 71 ASN 71 71 71 ASN ASN B . n B 1 72 CYS 72 72 72 CYS CYS B . n B 1 73 TYR 73 73 73 TYR TYR B . n B 1 74 GLN 74 74 74 GLN GLN B . n B 1 75 SER 75 75 75 SER SER B . n B 1 76 TYR 76 76 76 TYR TYR B . n B 1 77 SER 77 77 77 SER SER B . n B 1 78 THR 78 78 78 THR THR B . n B 1 79 MET 79 79 79 MET MET B . n B 1 80 SER 80 80 80 SER SER B . n B 1 81 ILE 81 81 81 ILE ILE B . n B 1 82 THR 82 82 82 THR THR B . n B 1 83 ASP 83 83 83 ASP ASP B . n B 1 84 CYS 84 84 84 CYS CYS B . n B 1 85 ARG 85 85 85 ARG ARG B . n B 1 86 GLU 86 86 86 GLU GLU B . n B 1 87 THR 87 87 87 THR THR B . n B 1 88 GLY 88 88 88 GLY GLY B . n B 1 89 SER 89 89 89 SER SER B . n B 1 90 SER 90 90 90 SER SER B . n B 1 91 LYS 91 91 91 LYS LYS B . n B 1 92 TYR 92 92 92 TYR TYR B . n B 1 93 PRO 93 93 93 PRO PRO B . n B 1 94 ASN 94 94 94 ASN ASN B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 TYR 97 97 97 TYR TYR B . n B 1 98 LYS 98 98 98 LYS LYS B . n B 1 99 THR 99 99 99 THR THR B . n B 1 100 THR 100 100 100 THR THR B . n B 1 101 GLN 101 101 101 GLN GLN B . n B 1 102 ALA 102 102 102 ALA ALA B . n B 1 103 ASN 103 103 103 ASN ASN B . n B 1 104 LYS 104 104 104 LYS LYS B . n B 1 105 HIS 105 105 105 HIS HIS B . n B 1 106 ILE 106 106 106 ILE ILE B . n B 1 107 ILE 107 107 107 ILE ILE B . n B 1 108 VAL 108 108 108 VAL VAL B . n B 1 109 ALA 109 109 109 ALA ALA B . n B 1 110 CYS 110 110 110 CYS CYS B . n B 1 111 GLU 111 111 111 GLU GLU B . n B 1 112 GLY 112 112 112 GLY GLY B . n B 1 113 ASN 113 113 113 ASN ASN B . n B 1 114 PRO 114 114 114 PRO PRO B . n B 1 115 TYR 115 115 115 TYR TYR B . n B 1 116 VAL 116 116 116 VAL VAL B . n B 1 117 PRO 117 117 117 PRO PRO B . n B 1 118 VAL 118 118 118 VAL VAL B . n B 1 119 HIS 119 119 119 HIS HIS B . n B 1 120 PHE 120 120 120 PHE PHE B . n B 1 121 ASP 121 121 121 ASP ASP B . n B 1 122 ALA 122 122 122 ALA ALA B . n B 1 123 SER 123 123 123 SER SER B . n B 1 124 VAL 124 124 124 VAL VAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CGP 1 700 700 CGP CGP B . E 4 SO4 1 3000 3000 SO4 SO4 B . F 5 HOH 1 901 901 HOH HOH A . F 5 HOH 2 906 906 HOH HOH A . F 5 HOH 3 907 907 HOH HOH A . F 5 HOH 4 910 910 HOH HOH A . F 5 HOH 5 915 915 HOH HOH A . F 5 HOH 6 916 916 HOH HOH A . F 5 HOH 7 917 917 HOH HOH A . F 5 HOH 8 918 918 HOH HOH A . F 5 HOH 9 931 931 HOH HOH A . F 5 HOH 10 935 935 HOH HOH A . F 5 HOH 11 936 936 HOH HOH A . F 5 HOH 12 944 944 HOH HOH A . F 5 HOH 13 949 949 HOH HOH A . F 5 HOH 14 951 951 HOH HOH A . F 5 HOH 15 956 956 HOH HOH A . F 5 HOH 16 958 958 HOH HOH A . F 5 HOH 17 960 960 HOH HOH A . F 5 HOH 18 962 962 HOH HOH A . F 5 HOH 19 963 963 HOH HOH A . F 5 HOH 20 965 965 HOH HOH A . F 5 HOH 21 966 966 HOH HOH A . F 5 HOH 22 967 967 HOH HOH A . F 5 HOH 23 968 968 HOH HOH A . F 5 HOH 24 973 973 HOH HOH A . F 5 HOH 25 974 974 HOH HOH A . F 5 HOH 26 975 975 HOH HOH A . F 5 HOH 27 981 981 HOH HOH A . F 5 HOH 28 982 982 HOH HOH A . F 5 HOH 29 988 988 HOH HOH A . F 5 HOH 30 991 991 HOH HOH A . F 5 HOH 31 1000 1000 HOH HOH A . F 5 HOH 32 1004 1004 HOH HOH A . F 5 HOH 33 1005 1005 HOH HOH A . F 5 HOH 34 1006 1006 HOH HOH A . F 5 HOH 35 1011 1011 HOH HOH A . F 5 HOH 36 1016 1016 HOH HOH A . F 5 HOH 37 1021 1021 HOH HOH A . F 5 HOH 38 1023 1023 HOH HOH A . F 5 HOH 39 1026 1026 HOH HOH A . F 5 HOH 40 1027 1027 HOH HOH A . F 5 HOH 41 1028 1028 HOH HOH A . F 5 HOH 42 1029 1029 HOH HOH A . F 5 HOH 43 1030 1030 HOH HOH A . F 5 HOH 44 1032 1032 HOH HOH A . F 5 HOH 45 1037 1037 HOH HOH A . F 5 HOH 46 1040 1040 HOH HOH A . F 5 HOH 47 1047 1047 HOH HOH A . F 5 HOH 48 1049 1049 HOH HOH A . F 5 HOH 49 1055 1055 HOH HOH A . F 5 HOH 50 1061 1061 HOH HOH A . F 5 HOH 51 1062 1062 HOH HOH A . F 5 HOH 52 1063 1063 HOH HOH A . F 5 HOH 53 1065 1065 HOH HOH A . F 5 HOH 54 1068 1068 HOH HOH A . F 5 HOH 55 1072 1072 HOH HOH A . F 5 HOH 56 1073 1073 HOH HOH A . F 5 HOH 57 1082 1082 HOH HOH A . F 5 HOH 58 1083 1083 HOH HOH A . F 5 HOH 59 1090 1090 HOH HOH A . F 5 HOH 60 1096 1096 HOH HOH A . F 5 HOH 61 1100 1100 HOH HOH A . F 5 HOH 62 1105 1105 HOH HOH A . F 5 HOH 63 1107 1107 HOH HOH A . F 5 HOH 64 1115 1115 HOH HOH A . F 5 HOH 65 1116 1116 HOH HOH A . F 5 HOH 66 1120 1120 HOH HOH A . F 5 HOH 67 1122 1122 HOH HOH A . F 5 HOH 68 1127 1127 HOH HOH A . F 5 HOH 69 1133 1133 HOH HOH A . F 5 HOH 70 1140 1140 HOH HOH A . F 5 HOH 71 1142 1142 HOH HOH A . F 5 HOH 72 1146 1146 HOH HOH A . F 5 HOH 73 1147 1147 HOH HOH A . F 5 HOH 74 1155 1155 HOH HOH A . F 5 HOH 75 1157 1157 HOH HOH A . F 5 HOH 76 1172 1172 HOH HOH A . F 5 HOH 77 1179 1179 HOH HOH A . F 5 HOH 78 1191 1191 HOH HOH A . F 5 HOH 79 1195 1195 HOH HOH A . F 5 HOH 80 1199 1199 HOH HOH A . F 5 HOH 81 1201 1201 HOH HOH A . F 5 HOH 82 2001 2001 HOH HOH A . F 5 HOH 83 2005 2005 HOH HOH A . F 5 HOH 84 2010 2010 HOH HOH A . F 5 HOH 85 2018 2018 HOH HOH A . F 5 HOH 86 2025 2025 HOH HOH A . F 5 HOH 87 2026 2026 HOH HOH A . F 5 HOH 88 2028 2028 HOH HOH A . F 5 HOH 89 2029 2029 HOH HOH A . F 5 HOH 90 2030 2030 HOH HOH A . F 5 HOH 91 2034 2034 HOH HOH A . F 5 HOH 92 2035 2035 HOH HOH A . F 5 HOH 93 2038 2038 HOH HOH A . F 5 HOH 94 2041 2041 HOH HOH A . F 5 HOH 95 2044 2044 HOH HOH A . F 5 HOH 96 2046 2046 HOH HOH A . F 5 HOH 97 2049 2049 HOH HOH A . F 5 HOH 98 2051 2051 HOH HOH A . F 5 HOH 99 2052 2052 HOH HOH A . F 5 HOH 100 2055 2055 HOH HOH A . F 5 HOH 101 2057 2057 HOH HOH A . F 5 HOH 102 2060 2060 HOH HOH A . F 5 HOH 103 2061 2061 HOH HOH A . F 5 HOH 104 2062 2062 HOH HOH A . F 5 HOH 105 2064 2064 HOH HOH A . F 5 HOH 106 2069 2069 HOH HOH A . F 5 HOH 107 2070 2070 HOH HOH A . F 5 HOH 108 2071 2071 HOH HOH A . F 5 HOH 109 2073 2073 HOH HOH A . F 5 HOH 110 2075 2075 HOH HOH A . F 5 HOH 111 2081 2081 HOH HOH A . F 5 HOH 112 2083 2083 HOH HOH A . F 5 HOH 113 2084 2084 HOH HOH A . F 5 HOH 114 2092 2092 HOH HOH A . F 5 HOH 115 2095 2095 HOH HOH A . F 5 HOH 116 2101 2101 HOH HOH A . F 5 HOH 117 2102 2102 HOH HOH A . F 5 HOH 118 2109 2109 HOH HOH A . G 5 HOH 1 902 902 HOH HOH B . G 5 HOH 2 911 911 HOH HOH B . G 5 HOH 3 912 912 HOH HOH B . G 5 HOH 4 913 913 HOH HOH B . G 5 HOH 5 919 919 HOH HOH B . G 5 HOH 6 922 922 HOH HOH B . G 5 HOH 7 924 924 HOH HOH B . G 5 HOH 8 925 925 HOH HOH B . G 5 HOH 9 928 928 HOH HOH B . G 5 HOH 10 932 932 HOH HOH B . G 5 HOH 11 938 938 HOH HOH B . G 5 HOH 12 939 939 HOH HOH B . G 5 HOH 13 942 942 HOH HOH B . G 5 HOH 14 943 943 HOH HOH B . G 5 HOH 15 945 945 HOH HOH B . G 5 HOH 16 946 946 HOH HOH B . G 5 HOH 17 947 947 HOH HOH B . G 5 HOH 18 948 948 HOH HOH B . G 5 HOH 19 953 953 HOH HOH B . G 5 HOH 20 954 954 HOH HOH B . G 5 HOH 21 955 955 HOH HOH B . G 5 HOH 22 957 957 HOH HOH B . G 5 HOH 23 961 961 HOH HOH B . G 5 HOH 24 964 964 HOH HOH B . G 5 HOH 25 969 969 HOH HOH B . G 5 HOH 26 970 970 HOH HOH B . G 5 HOH 27 971 971 HOH HOH B . G 5 HOH 28 977 977 HOH HOH B . G 5 HOH 29 978 978 HOH HOH B . G 5 HOH 30 979 979 HOH HOH B . G 5 HOH 31 985 985 HOH HOH B . G 5 HOH 32 986 986 HOH HOH B . G 5 HOH 33 995 995 HOH HOH B . G 5 HOH 34 998 998 HOH HOH B . G 5 HOH 35 1001 1001 HOH HOH B . G 5 HOH 36 1003 1003 HOH HOH B . G 5 HOH 37 1007 1007 HOH HOH B . G 5 HOH 38 1008 1008 HOH HOH B . G 5 HOH 39 1009 1009 HOH HOH B . G 5 HOH 40 1010 1010 HOH HOH B . G 5 HOH 41 1012 1012 HOH HOH B . G 5 HOH 42 1013 1013 HOH HOH B . G 5 HOH 43 1015 1015 HOH HOH B . G 5 HOH 44 1017 1017 HOH HOH B . G 5 HOH 45 1018 1018 HOH HOH B . G 5 HOH 46 1042 1042 HOH HOH B . G 5 HOH 47 1045 1045 HOH HOH B . G 5 HOH 48 1048 1048 HOH HOH B . G 5 HOH 49 1051 1051 HOH HOH B . G 5 HOH 50 1053 1053 HOH HOH B . G 5 HOH 51 1059 1059 HOH HOH B . G 5 HOH 52 1077 1077 HOH HOH B . G 5 HOH 53 1078 1078 HOH HOH B . G 5 HOH 54 1084 1084 HOH HOH B . G 5 HOH 55 1085 1085 HOH HOH B . G 5 HOH 56 1086 1086 HOH HOH B . G 5 HOH 57 1088 1088 HOH HOH B . G 5 HOH 58 1092 1092 HOH HOH B . G 5 HOH 59 1094 1094 HOH HOH B . G 5 HOH 60 1101 1101 HOH HOH B . G 5 HOH 61 1106 1106 HOH HOH B . G 5 HOH 62 1110 1110 HOH HOH B . G 5 HOH 63 1112 1112 HOH HOH B . G 5 HOH 64 1125 1125 HOH HOH B . G 5 HOH 65 1130 1130 HOH HOH B . G 5 HOH 66 1132 1132 HOH HOH B . G 5 HOH 67 1144 1144 HOH HOH B . G 5 HOH 68 1149 1149 HOH HOH B . G 5 HOH 69 1150 1150 HOH HOH B . G 5 HOH 70 1153 1153 HOH HOH B . G 5 HOH 71 1162 1162 HOH HOH B . G 5 HOH 72 1180 1180 HOH HOH B . G 5 HOH 73 1182 1182 HOH HOH B . G 5 HOH 74 1186 1186 HOH HOH B . G 5 HOH 75 1190 1190 HOH HOH B . G 5 HOH 76 1197 1197 HOH HOH B . G 5 HOH 77 2002 2002 HOH HOH B . G 5 HOH 78 2006 2006 HOH HOH B . G 5 HOH 79 2008 2008 HOH HOH B . G 5 HOH 80 2009 2009 HOH HOH B . G 5 HOH 81 2013 2013 HOH HOH B . G 5 HOH 82 2021 2021 HOH HOH B . G 5 HOH 83 2022 2022 HOH HOH B . G 5 HOH 84 2027 2027 HOH HOH B . G 5 HOH 85 2032 2032 HOH HOH B . G 5 HOH 86 2048 2048 HOH HOH B . G 5 HOH 87 2053 2053 HOH HOH B . G 5 HOH 88 2059 2059 HOH HOH B . G 5 HOH 89 2077 2077 HOH HOH B . G 5 HOH 90 2086 2086 HOH HOH B . G 5 HOH 91 2089 2089 HOH HOH B . G 5 HOH 92 2105 2105 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_900006 _pdbx_molecule_features.name trehalose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900006 _pdbx_molecule.asym_id C # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A YCM 31 A YCM 31 ? CYS 'S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE' 2 A YCM 32 A YCM 32 ? CYS 'S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE' 3 B YCM 31 B YCM 31 ? CYS 'S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE' 4 B YCM 32 B YCM 32 ? CYS 'S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4210 ? 1 MORE -29 ? 1 'SSA (A^2)' 13410 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2021-11-10 5 'Structure model' 2 2 2023-11-01 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' entity_name_com 5 3 'Structure model' pdbx_branch_scheme 6 3 'Structure model' pdbx_chem_comp_identifier 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_molecule_features 13 3 'Structure model' pdbx_nonpoly_scheme 14 3 'Structure model' struct_conn 15 3 'Structure model' struct_site 16 3 'Structure model' struct_site_gen 17 4 'Structure model' chem_comp 18 4 'Structure model' database_2 19 4 'Structure model' struct_ref_seq_dif 20 5 'Structure model' chem_comp_atom 21 5 'Structure model' chem_comp_bond 22 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_atom_id' 10 3 'Structure model' '_atom_site.label_comp_id' 11 3 'Structure model' '_atom_site.type_symbol' 12 3 'Structure model' '_chem_comp.formula' 13 3 'Structure model' '_chem_comp.formula_weight' 14 3 'Structure model' '_chem_comp.id' 15 3 'Structure model' '_chem_comp.mon_nstd_flag' 16 3 'Structure model' '_chem_comp.name' 17 3 'Structure model' '_chem_comp.pdbx_synonyms' 18 3 'Structure model' '_chem_comp.type' 19 3 'Structure model' '_entity.formula_weight' 20 3 'Structure model' '_entity.pdbx_description' 21 3 'Structure model' '_entity.src_method' 22 3 'Structure model' '_entity.type' 23 4 'Structure model' '_chem_comp.pdbx_synonyms' 24 4 'Structure model' '_database_2.pdbx_DOI' 25 4 'Structure model' '_database_2.pdbx_database_accession' 26 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 AMoRE phasing . ? 2 CNS refinement 1.1 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 111 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 111 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 B _pdbx_validate_rmsd_bond.bond_value 1.374 _pdbx_validate_rmsd_bond.bond_target_value 1.517 _pdbx_validate_rmsd_bond.bond_deviation -0.143 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 14 ? ? -151.47 67.92 2 1 GLN A 60 ? ? -101.35 -120.31 3 1 SER A 90 ? ? -37.25 128.43 4 1 ASN A 94 ? ? -116.46 62.47 5 1 ALA A 122 ? ? 179.58 167.72 6 1 GLN B 60 ? ? -103.75 -128.71 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B CGP 700 ? O5B ? D CGP 1 O5B 2 1 N 1 B CGP 700 ? C5X ? D CGP 1 C5X 3 1 N 1 B CGP 700 ? C4X ? D CGP 1 C4X 4 1 N 1 B CGP 700 ? O4B ? D CGP 1 O4B 5 1 N 1 B CGP 700 ? C3X ? D CGP 1 C3X 6 1 N 1 B CGP 700 ? O3B ? D CGP 1 O3B 7 1 N 1 B CGP 700 ? C2X ? D CGP 1 C2X 8 1 N 1 B CGP 700 ? C1X ? D CGP 1 C1X 9 1 N 1 B CGP 700 ? N1C ? D CGP 1 N1C 10 1 N 1 B CGP 700 ? CC2 ? D CGP 1 CC2 11 1 N 1 B CGP 700 ? N3C ? D CGP 1 N3C 12 1 N 1 B CGP 700 ? CC4 ? D CGP 1 CC4 13 1 N 1 B CGP 700 ? CC5 ? D CGP 1 CC5 14 1 N 1 B CGP 700 ? CC6 ? D CGP 1 CC6 15 1 N 1 B CGP 700 ? O2C ? D CGP 1 O2C 16 1 N 1 B CGP 700 ? N4C ? D CGP 1 N4C # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 17 ? A THR 17 2 1 Y 1 A SER 18 ? A SER 18 3 1 Y 1 A PRO 19 ? A PRO 19 4 1 Y 1 A ALA 20 ? A ALA 20 5 1 Y 1 A SER 21 ? A SER 21 6 1 Y 1 A SER 22 ? A SER 22 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CGP P P N N 74 CGP O1P O N N 75 CGP O2P O N N 76 CGP O5B O N N 77 CGP C5X C N N 78 CGP C4X C N N 79 CGP O4B O N N 80 CGP C3X C N N 81 CGP O3B O N N 82 CGP C2X C N N 83 CGP C1X C N N 84 CGP N1C N N N 85 CGP CC2 C N N 86 CGP N3C N N N 87 CGP CC4 C N N 88 CGP CC5 C N N 89 CGP CC6 C N N 90 CGP O2C O N N 91 CGP N4C N N N 92 CGP O5D O N N 93 CGP C5D C N N 94 CGP C4D C N R 95 CGP O4D O N N 96 CGP C3D C N S 97 CGP O3D O N N 98 CGP C2D C N N 99 CGP C1D C N R 100 CGP N9G N Y N 101 CGP C8G C Y N 102 CGP N7G N Y N 103 CGP C5G C Y N 104 CGP C6G C N N 105 CGP O6G O N N 106 CGP N1G N N N 107 CGP C2G C N N 108 CGP N2G N N N 109 CGP N3G N N N 110 CGP C4G C Y N 111 CGP HOP2 H N N 112 CGP HO5C H N N 113 CGP H51C H N N 114 CGP H52C H N N 115 CGP H4B H N N 116 CGP H3B H N N 117 CGP H21C H N N 118 CGP H22C H N N 119 CGP H1B H N N 120 CGP H5C H N N 121 CGP H6C H N N 122 CGP H41C H N N 123 CGP H42C H N N 124 CGP H51G H N N 125 CGP H52G H N N 126 CGP H4D H N N 127 CGP H3D H N N 128 CGP HO3G H N N 129 CGP H21G H N N 130 CGP H22G H N N 131 CGP H1D H N N 132 CGP H8G H N N 133 CGP H1G H N N 134 CGP HN1G H N N 135 CGP HN2G H N N 136 CYS N N N N 137 CYS CA C N R 138 CYS C C N N 139 CYS O O N N 140 CYS CB C N N 141 CYS SG S N N 142 CYS OXT O N N 143 CYS H H N N 144 CYS H2 H N N 145 CYS HA H N N 146 CYS HB2 H N N 147 CYS HB3 H N N 148 CYS HG H N N 149 CYS HXT H N N 150 GLC C1 C N S 151 GLC C2 C N R 152 GLC C3 C N S 153 GLC C4 C N S 154 GLC C5 C N R 155 GLC C6 C N N 156 GLC O1 O N N 157 GLC O2 O N N 158 GLC O3 O N N 159 GLC O4 O N N 160 GLC O5 O N N 161 GLC O6 O N N 162 GLC H1 H N N 163 GLC H2 H N N 164 GLC H3 H N N 165 GLC H4 H N N 166 GLC H5 H N N 167 GLC H61 H N N 168 GLC H62 H N N 169 GLC HO1 H N N 170 GLC HO2 H N N 171 GLC HO3 H N N 172 GLC HO4 H N N 173 GLC HO6 H N N 174 GLN N N N N 175 GLN CA C N S 176 GLN C C N N 177 GLN O O N N 178 GLN CB C N N 179 GLN CG C N N 180 GLN CD C N N 181 GLN OE1 O N N 182 GLN NE2 N N N 183 GLN OXT O N N 184 GLN H H N N 185 GLN H2 H N N 186 GLN HA H N N 187 GLN HB2 H N N 188 GLN HB3 H N N 189 GLN HG2 H N N 190 GLN HG3 H N N 191 GLN HE21 H N N 192 GLN HE22 H N N 193 GLN HXT H N N 194 GLU N N N N 195 GLU CA C N S 196 GLU C C N N 197 GLU O O N N 198 GLU CB C N N 199 GLU CG C N N 200 GLU CD C N N 201 GLU OE1 O N N 202 GLU OE2 O N N 203 GLU OXT O N N 204 GLU H H N N 205 GLU H2 H N N 206 GLU HA H N N 207 GLU HB2 H N N 208 GLU HB3 H N N 209 GLU HG2 H N N 210 GLU HG3 H N N 211 GLU HE2 H N N 212 GLU HXT H N N 213 GLY N N N N 214 GLY CA C N N 215 GLY C C N N 216 GLY O O N N 217 GLY OXT O N N 218 GLY H H N N 219 GLY H2 H N N 220 GLY HA2 H N N 221 GLY HA3 H N N 222 GLY HXT H N N 223 HIS N N N N 224 HIS CA C N S 225 HIS C C N N 226 HIS O O N N 227 HIS CB C N N 228 HIS CG C Y N 229 HIS ND1 N Y N 230 HIS CD2 C Y N 231 HIS CE1 C Y N 232 HIS NE2 N Y N 233 HIS OXT O N N 234 HIS H H N N 235 HIS H2 H N N 236 HIS HA H N N 237 HIS HB2 H N N 238 HIS HB3 H N N 239 HIS HD1 H N N 240 HIS HD2 H N N 241 HIS HE1 H N N 242 HIS HE2 H N N 243 HIS HXT H N N 244 HOH O O N N 245 HOH H1 H N N 246 HOH H2 H N N 247 ILE N N N N 248 ILE CA C N S 249 ILE C C N N 250 ILE O O N N 251 ILE CB C N S 252 ILE CG1 C N N 253 ILE CG2 C N N 254 ILE CD1 C N N 255 ILE OXT O N N 256 ILE H H N N 257 ILE H2 H N N 258 ILE HA H N N 259 ILE HB H N N 260 ILE HG12 H N N 261 ILE HG13 H N N 262 ILE HG21 H N N 263 ILE HG22 H N N 264 ILE HG23 H N N 265 ILE HD11 H N N 266 ILE HD12 H N N 267 ILE HD13 H N N 268 ILE HXT H N N 269 LEU N N N N 270 LEU CA C N S 271 LEU C C N N 272 LEU O O N N 273 LEU CB C N N 274 LEU CG C N N 275 LEU CD1 C N N 276 LEU CD2 C N N 277 LEU OXT O N N 278 LEU H H N N 279 LEU H2 H N N 280 LEU HA H N N 281 LEU HB2 H N N 282 LEU HB3 H N N 283 LEU HG H N N 284 LEU HD11 H N N 285 LEU HD12 H N N 286 LEU HD13 H N N 287 LEU HD21 H N N 288 LEU HD22 H N N 289 LEU HD23 H N N 290 LEU HXT H N N 291 LYS N N N N 292 LYS CA C N S 293 LYS C C N N 294 LYS O O N N 295 LYS CB C N N 296 LYS CG C N N 297 LYS CD C N N 298 LYS CE C N N 299 LYS NZ N N N 300 LYS OXT O N N 301 LYS H H N N 302 LYS H2 H N N 303 LYS HA H N N 304 LYS HB2 H N N 305 LYS HB3 H N N 306 LYS HG2 H N N 307 LYS HG3 H N N 308 LYS HD2 H N N 309 LYS HD3 H N N 310 LYS HE2 H N N 311 LYS HE3 H N N 312 LYS HZ1 H N N 313 LYS HZ2 H N N 314 LYS HZ3 H N N 315 LYS HXT H N N 316 MET N N N N 317 MET CA C N S 318 MET C C N N 319 MET O O N N 320 MET CB C N N 321 MET CG C N N 322 MET SD S N N 323 MET CE C N N 324 MET OXT O N N 325 MET H H N N 326 MET H2 H N N 327 MET HA H N N 328 MET HB2 H N N 329 MET HB3 H N N 330 MET HG2 H N N 331 MET HG3 H N N 332 MET HE1 H N N 333 MET HE2 H N N 334 MET HE3 H N N 335 MET HXT H N N 336 PHE N N N N 337 PHE CA C N S 338 PHE C C N N 339 PHE O O N N 340 PHE CB C N N 341 PHE CG C Y N 342 PHE CD1 C Y N 343 PHE CD2 C Y N 344 PHE CE1 C Y N 345 PHE CE2 C Y N 346 PHE CZ C Y N 347 PHE OXT O N N 348 PHE H H N N 349 PHE H2 H N N 350 PHE HA H N N 351 PHE HB2 H N N 352 PHE HB3 H N N 353 PHE HD1 H N N 354 PHE HD2 H N N 355 PHE HE1 H N N 356 PHE HE2 H N N 357 PHE HZ H N N 358 PHE HXT H N N 359 PRO N N N N 360 PRO CA C N S 361 PRO C C N N 362 PRO O O N N 363 PRO CB C N N 364 PRO CG C N N 365 PRO CD C N N 366 PRO OXT O N N 367 PRO H H N N 368 PRO HA H N N 369 PRO HB2 H N N 370 PRO HB3 H N N 371 PRO HG2 H N N 372 PRO HG3 H N N 373 PRO HD2 H N N 374 PRO HD3 H N N 375 PRO HXT H N N 376 SER N N N N 377 SER CA C N S 378 SER C C N N 379 SER O O N N 380 SER CB C N N 381 SER OG O N N 382 SER OXT O N N 383 SER H H N N 384 SER H2 H N N 385 SER HA H N N 386 SER HB2 H N N 387 SER HB3 H N N 388 SER HG H N N 389 SER HXT H N N 390 SO4 S S N N 391 SO4 O1 O N N 392 SO4 O2 O N N 393 SO4 O3 O N N 394 SO4 O4 O N N 395 THR N N N N 396 THR CA C N S 397 THR C C N N 398 THR O O N N 399 THR CB C N R 400 THR OG1 O N N 401 THR CG2 C N N 402 THR OXT O N N 403 THR H H N N 404 THR H2 H N N 405 THR HA H N N 406 THR HB H N N 407 THR HG1 H N N 408 THR HG21 H N N 409 THR HG22 H N N 410 THR HG23 H N N 411 THR HXT H N N 412 TYR N N N N 413 TYR CA C N S 414 TYR C C N N 415 TYR O O N N 416 TYR CB C N N 417 TYR CG C Y N 418 TYR CD1 C Y N 419 TYR CD2 C Y N 420 TYR CE1 C Y N 421 TYR CE2 C Y N 422 TYR CZ C Y N 423 TYR OH O N N 424 TYR OXT O N N 425 TYR H H N N 426 TYR H2 H N N 427 TYR HA H N N 428 TYR HB2 H N N 429 TYR HB3 H N N 430 TYR HD1 H N N 431 TYR HD2 H N N 432 TYR HE1 H N N 433 TYR HE2 H N N 434 TYR HH H N N 435 TYR HXT H N N 436 VAL N N N N 437 VAL CA C N S 438 VAL C C N N 439 VAL O O N N 440 VAL CB C N N 441 VAL CG1 C N N 442 VAL CG2 C N N 443 VAL OXT O N N 444 VAL H H N N 445 VAL H2 H N N 446 VAL HA H N N 447 VAL HB H N N 448 VAL HG11 H N N 449 VAL HG12 H N N 450 VAL HG13 H N N 451 VAL HG21 H N N 452 VAL HG22 H N N 453 VAL HG23 H N N 454 VAL HXT H N N 455 YCM N N N N 456 YCM CA C N R 457 YCM CB C N N 458 YCM SG S N N 459 YCM CD C N N 460 YCM CE C N N 461 YCM OZ1 O N N 462 YCM NZ2 N N N 463 YCM C C N N 464 YCM O O N N 465 YCM OXT O N N 466 YCM H H N N 467 YCM H2 H N N 468 YCM HA H N N 469 YCM HB2 H N N 470 YCM HB3 H N N 471 YCM HD2 H N N 472 YCM HD3 H N N 473 YCM HZ21 H N N 474 YCM HZ22 H N N 475 YCM HXT H N N 476 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CGP P O1P doub N N 70 CGP P O2P sing N N 71 CGP P O3B sing N N 72 CGP P O5D sing N N 73 CGP O2P HOP2 sing N N 74 CGP O5B C5X sing N N 75 CGP O5B HO5C sing N N 76 CGP C5X C4X sing N N 77 CGP C5X H51C sing N N 78 CGP C5X H52C sing N N 79 CGP C4X O4B sing N N 80 CGP C4X C3X sing N N 81 CGP C4X H4B sing N N 82 CGP O4B C1X sing N N 83 CGP C3X O3B sing N N 84 CGP C3X C2X sing N N 85 CGP C3X H3B sing N N 86 CGP C2X C1X sing N N 87 CGP C2X H21C sing N N 88 CGP C2X H22C sing N N 89 CGP C1X N1C sing N N 90 CGP C1X H1B sing N N 91 CGP N1C CC2 sing N N 92 CGP N1C CC6 sing N N 93 CGP CC2 N3C sing N N 94 CGP CC2 O2C doub N N 95 CGP N3C CC4 doub N N 96 CGP CC4 CC5 sing N N 97 CGP CC4 N4C sing N N 98 CGP CC5 CC6 doub N N 99 CGP CC5 H5C sing N N 100 CGP CC6 H6C sing N N 101 CGP N4C H41C sing N N 102 CGP N4C H42C sing N N 103 CGP O5D C5D sing N N 104 CGP C5D C4D sing N N 105 CGP C5D H51G sing N N 106 CGP C5D H52G sing N N 107 CGP C4D O4D sing N N 108 CGP C4D C3D sing N N 109 CGP C4D H4D sing N N 110 CGP O4D C1D sing N N 111 CGP C3D O3D sing N N 112 CGP C3D C2D sing N N 113 CGP C3D H3D sing N N 114 CGP O3D HO3G sing N N 115 CGP C2D C1D sing N N 116 CGP C2D H21G sing N N 117 CGP C2D H22G sing N N 118 CGP C1D N9G sing N N 119 CGP C1D H1D sing N N 120 CGP N9G C8G sing Y N 121 CGP N9G C4G sing Y N 122 CGP C8G N7G doub Y N 123 CGP C8G H8G sing N N 124 CGP N7G C5G sing Y N 125 CGP C5G C6G sing N N 126 CGP C5G C4G doub Y N 127 CGP C6G O6G doub N N 128 CGP C6G N1G sing N N 129 CGP N1G C2G sing N N 130 CGP N1G H1G sing N N 131 CGP C2G N2G sing N N 132 CGP C2G N3G doub N N 133 CGP N2G HN1G sing N N 134 CGP N2G HN2G sing N N 135 CGP N3G C4G sing N N 136 CYS N CA sing N N 137 CYS N H sing N N 138 CYS N H2 sing N N 139 CYS CA C sing N N 140 CYS CA CB sing N N 141 CYS CA HA sing N N 142 CYS C O doub N N 143 CYS C OXT sing N N 144 CYS CB SG sing N N 145 CYS CB HB2 sing N N 146 CYS CB HB3 sing N N 147 CYS SG HG sing N N 148 CYS OXT HXT sing N N 149 GLC C1 C2 sing N N 150 GLC C1 O1 sing N N 151 GLC C1 O5 sing N N 152 GLC C1 H1 sing N N 153 GLC C2 C3 sing N N 154 GLC C2 O2 sing N N 155 GLC C2 H2 sing N N 156 GLC C3 C4 sing N N 157 GLC C3 O3 sing N N 158 GLC C3 H3 sing N N 159 GLC C4 C5 sing N N 160 GLC C4 O4 sing N N 161 GLC C4 H4 sing N N 162 GLC C5 C6 sing N N 163 GLC C5 O5 sing N N 164 GLC C5 H5 sing N N 165 GLC C6 O6 sing N N 166 GLC C6 H61 sing N N 167 GLC C6 H62 sing N N 168 GLC O1 HO1 sing N N 169 GLC O2 HO2 sing N N 170 GLC O3 HO3 sing N N 171 GLC O4 HO4 sing N N 172 GLC O6 HO6 sing N N 173 GLN N CA sing N N 174 GLN N H sing N N 175 GLN N H2 sing N N 176 GLN CA C sing N N 177 GLN CA CB sing N N 178 GLN CA HA sing N N 179 GLN C O doub N N 180 GLN C OXT sing N N 181 GLN CB CG sing N N 182 GLN CB HB2 sing N N 183 GLN CB HB3 sing N N 184 GLN CG CD sing N N 185 GLN CG HG2 sing N N 186 GLN CG HG3 sing N N 187 GLN CD OE1 doub N N 188 GLN CD NE2 sing N N 189 GLN NE2 HE21 sing N N 190 GLN NE2 HE22 sing N N 191 GLN OXT HXT sing N N 192 GLU N CA sing N N 193 GLU N H sing N N 194 GLU N H2 sing N N 195 GLU CA C sing N N 196 GLU CA CB sing N N 197 GLU CA HA sing N N 198 GLU C O doub N N 199 GLU C OXT sing N N 200 GLU CB CG sing N N 201 GLU CB HB2 sing N N 202 GLU CB HB3 sing N N 203 GLU CG CD sing N N 204 GLU CG HG2 sing N N 205 GLU CG HG3 sing N N 206 GLU CD OE1 doub N N 207 GLU CD OE2 sing N N 208 GLU OE2 HE2 sing N N 209 GLU OXT HXT sing N N 210 GLY N CA sing N N 211 GLY N H sing N N 212 GLY N H2 sing N N 213 GLY CA C sing N N 214 GLY CA HA2 sing N N 215 GLY CA HA3 sing N N 216 GLY C O doub N N 217 GLY C OXT sing N N 218 GLY OXT HXT sing N N 219 HIS N CA sing N N 220 HIS N H sing N N 221 HIS N H2 sing N N 222 HIS CA C sing N N 223 HIS CA CB sing N N 224 HIS CA HA sing N N 225 HIS C O doub N N 226 HIS C OXT sing N N 227 HIS CB CG sing N N 228 HIS CB HB2 sing N N 229 HIS CB HB3 sing N N 230 HIS CG ND1 sing Y N 231 HIS CG CD2 doub Y N 232 HIS ND1 CE1 doub Y N 233 HIS ND1 HD1 sing N N 234 HIS CD2 NE2 sing Y N 235 HIS CD2 HD2 sing N N 236 HIS CE1 NE2 sing Y N 237 HIS CE1 HE1 sing N N 238 HIS NE2 HE2 sing N N 239 HIS OXT HXT sing N N 240 HOH O H1 sing N N 241 HOH O H2 sing N N 242 ILE N CA sing N N 243 ILE N H sing N N 244 ILE N H2 sing N N 245 ILE CA C sing N N 246 ILE CA CB sing N N 247 ILE CA HA sing N N 248 ILE C O doub N N 249 ILE C OXT sing N N 250 ILE CB CG1 sing N N 251 ILE CB CG2 sing N N 252 ILE CB HB sing N N 253 ILE CG1 CD1 sing N N 254 ILE CG1 HG12 sing N N 255 ILE CG1 HG13 sing N N 256 ILE CG2 HG21 sing N N 257 ILE CG2 HG22 sing N N 258 ILE CG2 HG23 sing N N 259 ILE CD1 HD11 sing N N 260 ILE CD1 HD12 sing N N 261 ILE CD1 HD13 sing N N 262 ILE OXT HXT sing N N 263 LEU N CA sing N N 264 LEU N H sing N N 265 LEU N H2 sing N N 266 LEU CA C sing N N 267 LEU CA CB sing N N 268 LEU CA HA sing N N 269 LEU C O doub N N 270 LEU C OXT sing N N 271 LEU CB CG sing N N 272 LEU CB HB2 sing N N 273 LEU CB HB3 sing N N 274 LEU CG CD1 sing N N 275 LEU CG CD2 sing N N 276 LEU CG HG sing N N 277 LEU CD1 HD11 sing N N 278 LEU CD1 HD12 sing N N 279 LEU CD1 HD13 sing N N 280 LEU CD2 HD21 sing N N 281 LEU CD2 HD22 sing N N 282 LEU CD2 HD23 sing N N 283 LEU OXT HXT sing N N 284 LYS N CA sing N N 285 LYS N H sing N N 286 LYS N H2 sing N N 287 LYS CA C sing N N 288 LYS CA CB sing N N 289 LYS CA HA sing N N 290 LYS C O doub N N 291 LYS C OXT sing N N 292 LYS CB CG sing N N 293 LYS CB HB2 sing N N 294 LYS CB HB3 sing N N 295 LYS CG CD sing N N 296 LYS CG HG2 sing N N 297 LYS CG HG3 sing N N 298 LYS CD CE sing N N 299 LYS CD HD2 sing N N 300 LYS CD HD3 sing N N 301 LYS CE NZ sing N N 302 LYS CE HE2 sing N N 303 LYS CE HE3 sing N N 304 LYS NZ HZ1 sing N N 305 LYS NZ HZ2 sing N N 306 LYS NZ HZ3 sing N N 307 LYS OXT HXT sing N N 308 MET N CA sing N N 309 MET N H sing N N 310 MET N H2 sing N N 311 MET CA C sing N N 312 MET CA CB sing N N 313 MET CA HA sing N N 314 MET C O doub N N 315 MET C OXT sing N N 316 MET CB CG sing N N 317 MET CB HB2 sing N N 318 MET CB HB3 sing N N 319 MET CG SD sing N N 320 MET CG HG2 sing N N 321 MET CG HG3 sing N N 322 MET SD CE sing N N 323 MET CE HE1 sing N N 324 MET CE HE2 sing N N 325 MET CE HE3 sing N N 326 MET OXT HXT sing N N 327 PHE N CA sing N N 328 PHE N H sing N N 329 PHE N H2 sing N N 330 PHE CA C sing N N 331 PHE CA CB sing N N 332 PHE CA HA sing N N 333 PHE C O doub N N 334 PHE C OXT sing N N 335 PHE CB CG sing N N 336 PHE CB HB2 sing N N 337 PHE CB HB3 sing N N 338 PHE CG CD1 doub Y N 339 PHE CG CD2 sing Y N 340 PHE CD1 CE1 sing Y N 341 PHE CD1 HD1 sing N N 342 PHE CD2 CE2 doub Y N 343 PHE CD2 HD2 sing N N 344 PHE CE1 CZ doub Y N 345 PHE CE1 HE1 sing N N 346 PHE CE2 CZ sing Y N 347 PHE CE2 HE2 sing N N 348 PHE CZ HZ sing N N 349 PHE OXT HXT sing N N 350 PRO N CA sing N N 351 PRO N CD sing N N 352 PRO N H sing N N 353 PRO CA C sing N N 354 PRO CA CB sing N N 355 PRO CA HA sing N N 356 PRO C O doub N N 357 PRO C OXT sing N N 358 PRO CB CG sing N N 359 PRO CB HB2 sing N N 360 PRO CB HB3 sing N N 361 PRO CG CD sing N N 362 PRO CG HG2 sing N N 363 PRO CG HG3 sing N N 364 PRO CD HD2 sing N N 365 PRO CD HD3 sing N N 366 PRO OXT HXT sing N N 367 SER N CA sing N N 368 SER N H sing N N 369 SER N H2 sing N N 370 SER CA C sing N N 371 SER CA CB sing N N 372 SER CA HA sing N N 373 SER C O doub N N 374 SER C OXT sing N N 375 SER CB OG sing N N 376 SER CB HB2 sing N N 377 SER CB HB3 sing N N 378 SER OG HG sing N N 379 SER OXT HXT sing N N 380 SO4 S O1 doub N N 381 SO4 S O2 doub N N 382 SO4 S O3 sing N N 383 SO4 S O4 sing N N 384 THR N CA sing N N 385 THR N H sing N N 386 THR N H2 sing N N 387 THR CA C sing N N 388 THR CA CB sing N N 389 THR CA HA sing N N 390 THR C O doub N N 391 THR C OXT sing N N 392 THR CB OG1 sing N N 393 THR CB CG2 sing N N 394 THR CB HB sing N N 395 THR OG1 HG1 sing N N 396 THR CG2 HG21 sing N N 397 THR CG2 HG22 sing N N 398 THR CG2 HG23 sing N N 399 THR OXT HXT sing N N 400 TYR N CA sing N N 401 TYR N H sing N N 402 TYR N H2 sing N N 403 TYR CA C sing N N 404 TYR CA CB sing N N 405 TYR CA HA sing N N 406 TYR C O doub N N 407 TYR C OXT sing N N 408 TYR CB CG sing N N 409 TYR CB HB2 sing N N 410 TYR CB HB3 sing N N 411 TYR CG CD1 doub Y N 412 TYR CG CD2 sing Y N 413 TYR CD1 CE1 sing Y N 414 TYR CD1 HD1 sing N N 415 TYR CD2 CE2 doub Y N 416 TYR CD2 HD2 sing N N 417 TYR CE1 CZ doub Y N 418 TYR CE1 HE1 sing N N 419 TYR CE2 CZ sing Y N 420 TYR CE2 HE2 sing N N 421 TYR CZ OH sing N N 422 TYR OH HH sing N N 423 TYR OXT HXT sing N N 424 VAL N CA sing N N 425 VAL N H sing N N 426 VAL N H2 sing N N 427 VAL CA C sing N N 428 VAL CA CB sing N N 429 VAL CA HA sing N N 430 VAL C O doub N N 431 VAL C OXT sing N N 432 VAL CB CG1 sing N N 433 VAL CB CG2 sing N N 434 VAL CB HB sing N N 435 VAL CG1 HG11 sing N N 436 VAL CG1 HG12 sing N N 437 VAL CG1 HG13 sing N N 438 VAL CG2 HG21 sing N N 439 VAL CG2 HG22 sing N N 440 VAL CG2 HG23 sing N N 441 VAL OXT HXT sing N N 442 YCM N CA sing N N 443 YCM N H sing N N 444 YCM N H2 sing N N 445 YCM CA CB sing N N 446 YCM CA C sing N N 447 YCM CA HA sing N N 448 YCM CB SG sing N N 449 YCM CB HB2 sing N N 450 YCM CB HB3 sing N N 451 YCM SG CD sing N N 452 YCM CD CE sing N N 453 YCM CD HD2 sing N N 454 YCM CD HD3 sing N N 455 YCM CE OZ1 doub N N 456 YCM CE NZ2 sing N N 457 YCM NZ2 HZ21 sing N N 458 YCM NZ2 HZ22 sing N N 459 YCM C O doub N N 460 YCM C OXT sing N N 461 YCM OXT HXT sing N N 462 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 GLC 1 C GLC 1 ? TRE 1151 n C 2 GLC 2 C GLC 2 ? TRE 1151 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpa1-1DGlcpa 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1a_1-5]/1-1/a1-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Glcp]{[(1+1)][a-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 GLC 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "2'-DEOXYCYTIDINE-2'-DEOXYGUANOSINE-3',5'-MONOPHOSPHATE" CGP 4 'SULFATE ION' SO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1KF3 _pdbx_initial_refinement_model.details 'PDB ENTRY 1KF3' #