data_3FL6 # _entry.id 3FL6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FL6 pdb_00003fl6 10.2210/pdb3fl6/pdb NDB BD0108 ? ? RCSB RCSB050725 ? ? WWPDB D_1000050725 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-06-19 4 'Structure model' 1 3 2018-06-06 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3FL6 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-12-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2h0n 'Contains the same type of synthetic nucleosides' unspecified PDB 2p8d 'Contains the same type of synthetic nucleosides' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Robeyns, K.' 1 'Herdewijn, P.' 2 'Van Meervelt, L.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Direct observation of two cyclohexenyl (CeNA) ring conformations in duplex DNA.' 'Artif DNA PNA XNA' 1 2 8 2010 ? US 1949-0968 ? ? 21687521 10.4161/adna.1.1.10952 1 'Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(CGCGAATTCGCG).' 'Nucleic Acids Res.' 36 1407 1714 2008 NARHAD UK 0305-1048 0389 ? ? ? 2 'Structure of the fully modified left-handed cyclohexene nucleic acid sequence GTGTACAC.' J.Am.Chem.Soc. 130 1979 1984 2008 JACSAT US 0002-7863 0004 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Robeyns, K.' 1 ? primary 'Herdewijn, P.' 2 ? primary 'Van Meervelt, L.' 3 ? 1 'Robeyns, K.' 4 ? 1 'Herdewijn, P.' 5 ? 1 'Van Meervelt, L.' 6 ? 2 'Robeyns, K.' 7 ? 2 'Herdewijn, P.' 8 ? 2 'Van Meervelt, L.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3'" 2164.460 2 ? ? ? ? 2 polymer syn "5'-D(*CP*GP*CP*AP*CP*GP*C)-3'" 2083.388 2 ? ? ? ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 7 ? ? ? ? 4 water nat water 18.015 130 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DC)(DG)(XTR)(DG)(DC)(DG)' GCGTGCG A,C ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DA)(DC)(DG)(DC)' CGCACGC B,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'COBALT HEXAMMINE(III)' NCO 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 XTR n 1 5 DG n 1 6 DC n 1 7 DG n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DA n 2 5 DC n 2 6 DG n 2 7 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 XTR 'DNA linking' n '[(1R,4S,6S)-6-hydroxy-4-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclohex-2-en-1-yl]methyl dihydrogen phosphate' ? 'C12 H17 N2 O7 P' 332.246 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 XTR 4 4 4 XTR XTR A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DG 7 7 7 DG G A . n B 2 1 DC 1 1 1 DC C B . n B 2 2 DG 2 2 2 DG G B . n B 2 3 DC 3 3 3 DC C B . n B 2 4 DA 4 4 4 DA A B . n B 2 5 DC 5 5 5 DC C B . n B 2 6 DG 6 6 6 DG G B . n B 2 7 DC 7 7 7 DC C B . n C 1 1 DG 1 1 1 DG G C . n C 1 2 DC 2 2 2 DC C C . n C 1 3 DG 3 3 3 DG G C . n C 1 4 XTR 4 4 4 XTR XTR C . n C 1 5 DG 5 5 5 DG G C . n C 1 6 DC 6 6 6 DC C C . n C 1 7 DG 7 7 7 DG G C . n D 2 1 DC 1 1 1 DC C D . n D 2 2 DG 2 2 2 DG G D . n D 2 3 DC 3 3 3 DC C D . n D 2 4 DA 4 4 4 DA A D . n D 2 5 DC 5 5 5 DC C D . n D 2 6 DG 6 6 6 DG G D . n D 2 7 DC 7 7 7 DC C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NCO 1 63 63 NCO NCO A . F 3 NCO 1 61 61 NCO NCO B . G 3 NCO 1 65 65 NCO NCO B . H 3 NCO 1 64 64 NCO NCO C . I 3 NCO 1 66 66 NCO NCO C . J 3 NCO 1 67 67 NCO NCO C . K 3 NCO 1 62 62 NCO NCO D . L 4 HOH 1 101 101 HOH HOH A . L 4 HOH 2 117 117 HOH HOH A . L 4 HOH 3 118 118 HOH HOH A . L 4 HOH 4 127 127 HOH HOH A . L 4 HOH 5 135 135 HOH HOH A . L 4 HOH 6 137 137 HOH HOH A . L 4 HOH 7 140 140 HOH HOH A . L 4 HOH 8 151 151 HOH HOH A . L 4 HOH 9 153 153 HOH HOH A . L 4 HOH 10 155 155 HOH HOH A . L 4 HOH 11 164 164 HOH HOH A . L 4 HOH 12 165 165 HOH HOH A . L 4 HOH 13 167 167 HOH HOH A . L 4 HOH 14 169 169 HOH HOH A . L 4 HOH 15 174 174 HOH HOH A . L 4 HOH 16 175 175 HOH HOH A . L 4 HOH 17 177 177 HOH HOH A . L 4 HOH 18 185 185 HOH HOH A . L 4 HOH 19 204 204 HOH HOH A . L 4 HOH 20 206 206 HOH HOH A . L 4 HOH 21 210 210 HOH HOH A . L 4 HOH 22 211 211 HOH HOH A . L 4 HOH 23 216 216 HOH HOH A . L 4 HOH 24 221 221 HOH HOH A . L 4 HOH 25 222 222 HOH HOH A . L 4 HOH 26 223 223 HOH HOH A . L 4 HOH 27 226 226 HOH HOH A . L 4 HOH 28 227 227 HOH HOH A . L 4 HOH 29 232 232 HOH HOH A . L 4 HOH 30 234 234 HOH HOH A . L 4 HOH 31 236 236 HOH HOH A . L 4 HOH 32 237 237 HOH HOH A . L 4 HOH 33 240 240 HOH HOH A . L 4 HOH 34 242 242 HOH HOH A . M 4 HOH 1 105 105 HOH HOH B . M 4 HOH 2 106 106 HOH HOH B . M 4 HOH 3 108 108 HOH HOH B . M 4 HOH 4 110 110 HOH HOH B . M 4 HOH 5 114 114 HOH HOH B . M 4 HOH 6 119 119 HOH HOH B . M 4 HOH 7 122 122 HOH HOH B . M 4 HOH 8 125 125 HOH HOH B . M 4 HOH 9 128 128 HOH HOH B . M 4 HOH 10 131 131 HOH HOH B . M 4 HOH 11 133 133 HOH HOH B . M 4 HOH 12 144 144 HOH HOH B . M 4 HOH 13 146 146 HOH HOH B . M 4 HOH 14 147 147 HOH HOH B . M 4 HOH 15 149 149 HOH HOH B . M 4 HOH 16 154 154 HOH HOH B . M 4 HOH 17 157 157 HOH HOH B . M 4 HOH 18 161 161 HOH HOH B . M 4 HOH 19 163 163 HOH HOH B . M 4 HOH 20 170 170 HOH HOH B . M 4 HOH 21 176 176 HOH HOH B . M 4 HOH 22 187 187 HOH HOH B . M 4 HOH 23 202 202 HOH HOH B . M 4 HOH 24 209 209 HOH HOH B . M 4 HOH 25 217 217 HOH HOH B . M 4 HOH 26 218 218 HOH HOH B . M 4 HOH 27 219 219 HOH HOH B . M 4 HOH 28 229 229 HOH HOH B . M 4 HOH 29 230 230 HOH HOH B . N 4 HOH 1 111 111 HOH HOH C . N 4 HOH 2 116 116 HOH HOH C . N 4 HOH 3 121 121 HOH HOH C . N 4 HOH 4 124 124 HOH HOH C . N 4 HOH 5 139 139 HOH HOH C . N 4 HOH 6 141 141 HOH HOH C . N 4 HOH 7 143 143 HOH HOH C . N 4 HOH 8 150 150 HOH HOH C . N 4 HOH 9 152 152 HOH HOH C . N 4 HOH 10 156 156 HOH HOH C . N 4 HOH 11 160 160 HOH HOH C . N 4 HOH 12 162 162 HOH HOH C . N 4 HOH 13 166 166 HOH HOH C . N 4 HOH 14 171 171 HOH HOH C . N 4 HOH 15 179 179 HOH HOH C . N 4 HOH 16 182 182 HOH HOH C . N 4 HOH 17 183 183 HOH HOH C . N 4 HOH 18 186 186 HOH HOH C . N 4 HOH 19 188 188 HOH HOH C . N 4 HOH 20 189 189 HOH HOH C . N 4 HOH 21 201 201 HOH HOH C . N 4 HOH 22 205 205 HOH HOH C . N 4 HOH 23 207 207 HOH HOH C . N 4 HOH 24 208 208 HOH HOH C . N 4 HOH 25 212 212 HOH HOH C . N 4 HOH 26 214 214 HOH HOH C . N 4 HOH 27 215 215 HOH HOH C . N 4 HOH 28 220 220 HOH HOH C . N 4 HOH 29 224 224 HOH HOH C . N 4 HOH 30 225 225 HOH HOH C . N 4 HOH 31 228 228 HOH HOH C . N 4 HOH 32 231 231 HOH HOH C . N 4 HOH 33 233 233 HOH HOH C . N 4 HOH 34 235 235 HOH HOH C . O 4 HOH 1 102 102 HOH HOH D . O 4 HOH 2 103 103 HOH HOH D . O 4 HOH 3 104 104 HOH HOH D . O 4 HOH 4 107 107 HOH HOH D . O 4 HOH 5 109 109 HOH HOH D . O 4 HOH 6 112 112 HOH HOH D . O 4 HOH 7 113 113 HOH HOH D . O 4 HOH 8 115 115 HOH HOH D . O 4 HOH 9 120 120 HOH HOH D . O 4 HOH 10 123 123 HOH HOH D . O 4 HOH 11 126 126 HOH HOH D . O 4 HOH 12 129 129 HOH HOH D . O 4 HOH 13 130 130 HOH HOH D . O 4 HOH 14 132 132 HOH HOH D . O 4 HOH 15 134 134 HOH HOH D . O 4 HOH 16 136 136 HOH HOH D . O 4 HOH 17 138 138 HOH HOH D . O 4 HOH 18 142 142 HOH HOH D . O 4 HOH 19 145 145 HOH HOH D . O 4 HOH 20 158 158 HOH HOH D . O 4 HOH 21 159 159 HOH HOH D . O 4 HOH 22 168 168 HOH HOH D . O 4 HOH 23 172 172 HOH HOH D . O 4 HOH 24 173 173 HOH HOH D . O 4 HOH 25 178 178 HOH HOH D . O 4 HOH 26 180 180 HOH HOH D . O 4 HOH 27 181 181 HOH HOH D . O 4 HOH 28 184 184 HOH HOH D . O 4 HOH 29 203 203 HOH HOH D . O 4 HOH 30 213 213 HOH HOH D . O 4 HOH 31 238 238 HOH HOH D . O 4 HOH 32 239 239 HOH HOH D . O 4 HOH 33 241 241 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 C NCO 67 ? N3 ? J NCO 1 N3 2 1 N 1 C NCO 67 ? N4 ? J NCO 1 N4 3 1 N 1 C NCO 67 ? N5 ? J NCO 1 N5 4 1 N 1 C NCO 67 ? N6 ? J NCO 1 N6 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 1 SCALA 3.2.19 22/12/2005 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de 'model building' http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de refinement http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 SHELXD . ? ? ? ? phasing ? ? ? 7 SHELXL-97 . ? ? ? ? refinement ? ? ? 8 # _cell.length_a 25.720 _cell.length_b 33.570 _cell.length_c 81.200 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3FL6 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3FL6 _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 3FL6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 40.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;10%(v/v) 2-methyl-2,4-pentanediol (MPD), 20mM cobalt hexamine, 40mM potassium cacodylate buffered at pH=5.5, and 80/12mM KCl/NaCl, vapor diffusion, hanging drop, temperature 289K ; # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'cobalt hexamine' ? ? ? 1 3 1 'potassium cacodylate' ? ? ? 1 4 1 KCl/NaCl ? ? ? 1 5 2 MPD ? ? ? 1 6 2 'cobalt hexamine' ? ? ? 1 7 2 'potassium cacodylate' ? ? ? 1 8 2 KCl/NaCl ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2008-04-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator UNDULATOR _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7749 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 0.7749 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3FL6 _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.86 _reflns.d_resolution_high 1.170 _reflns.number_obs 24411 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.09400 _reflns.pdbx_Rsym_value 0.09400 _reflns.pdbx_netI_over_sigmaI 3.7350 _reflns.B_iso_Wilson_estimate 6.3 _reflns.pdbx_redundancy 5.500 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.17 _reflns_shell.d_res_low 1.23 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs 0.52000 _reflns_shell.pdbx_Rsym_value 0.52000 _reflns_shell.meanI_over_sigI_obs 1.300 _reflns_shell.pdbx_redundancy 5.90 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3FL6 _refine.ls_number_reflns_obs 20137 _refine.ls_number_reflns_all 24372 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.86 _refine.ls_d_res_high 1.17 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.145 _refine.ls_R_factor_all 0.159 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1221 _refine.ls_number_parameters 6402 _refine.ls_number_restraints 9922 _refine.occupancy_min 0.22 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 10.739 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY 4%' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 564 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 130 _refine_hist.number_atoms_total 739 _refine_hist.d_res_high 1.17 _refine_hist.d_res_low 19.86 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.036 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.002 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.003 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 21.000 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.030 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.17 _refine_ls_shell.d_res_low 1.22 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.194 _refine_ls_shell.percent_reflns_obs 98.71 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 3FL6 _pdbx_refine.R_factor_all_no_cutoff 0.159 _pdbx_refine.R_factor_obs_no_cutoff 0.145 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1221 _pdbx_refine.R_factor_all_4sig_cutoff 0.145 _pdbx_refine.R_factor_obs_4sig_cutoff 0.145 _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 20136 # _database_PDB_matrix.entry_id 3FL6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 3FL6 _struct.title 'Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FL6 _struct_keywords.text 'double helix, CeNA, sugar modification, right-handed, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3FL6 3FL6 1 ? GCGTGCG ? 2 PDB 3FL6 3FL6 2 ? CGCACGC ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FL6 A 1 ? 7 ? 3FL6 1 ? 7 ? 1 7 2 1 3FL6 C 1 ? 7 ? 3FL6 1 ? 7 ? 1 7 3 2 3FL6 B 1 ? 7 ? 3FL6 1 ? 7 ? 1 7 4 2 3FL6 D 1 ? 7 ? 3FL6 1 ? 7 ? 1 7 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,L,M 2 1 C,D,H,I,J,K,N,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 3 "O3'" A ? ? 1_555 A XTR 4 P A ? A DG 3 A XTR 4 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale both ? A DG 3 "O3'" B ? ? 1_555 A XTR 4 P B ? A DG 3 A XTR 4 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale3 covale both ? A XTR 4 "O3'" A ? ? 1_555 A DG 5 P A ? A XTR 4 A DG 5 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale4 covale both ? A XTR 4 "O3'" B ? ? 1_555 A DG 5 P B ? A XTR 4 A DG 5 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale5 covale both ? C DG 3 "O3'" A ? ? 1_555 C XTR 4 P A ? C DG 3 C XTR 4 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale6 covale both ? C DG 3 "O3'" B ? ? 1_555 C XTR 4 P B ? C DG 3 C XTR 4 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale7 covale both ? C XTR 4 "O3'" ? ? ? 1_555 C DG 5 P ? ? C XTR 4 C DG 5 1_555 ? ? ? ? ? ? ? 1.583 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 1 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 1 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 1 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A XTR 4 N3 ? ? ? 1_555 B DA 4 N1 ? ? A XTR 4 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A XTR 4 O4 ? ? ? 1_555 B DA 4 N6 ? ? A XTR 4 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 5 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 5 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 5 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 6 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 6 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 6 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 1 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 1 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 1 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 2 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 2 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 2 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 3 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 3 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 3 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C XTR 4 N3 ? ? ? 1_555 D DA 4 N1 ? ? C XTR 4 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C XTR 4 O4 ? ? ? 1_555 D DA 4 N6 ? ? C XTR 4 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 3 N3 ? ? C DG 5 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 3 O2 ? ? C DG 5 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 3 N4 ? ? C DG 5 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 6 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 6 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 6 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NCO 63 ? 9 'BINDING SITE FOR RESIDUE NCO A 63' AC2 Software B NCO 61 ? 10 'BINDING SITE FOR RESIDUE NCO B 61' AC3 Software B NCO 65 ? 5 'BINDING SITE FOR RESIDUE NCO B 65' AC4 Software C NCO 64 ? 5 'BINDING SITE FOR RESIDUE NCO C 64' AC5 Software C NCO 66 ? 7 'BINDING SITE FOR RESIDUE NCO C 66' AC6 Software C NCO 67 ? 6 'BINDING SITE FOR RESIDUE NCO C 67' AC7 Software D NCO 62 ? 5 'BINDING SITE FOR RESIDUE NCO D 62' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 XTR A 4 ? XTR A 4 . ? 1_555 ? 2 AC1 9 DG A 7 ? DG A 7 . ? 3_755 ? 3 AC1 9 HOH L . ? HOH A 165 . ? 1_555 ? 4 AC1 9 HOH L . ? HOH A 175 . ? 3_755 ? 5 AC1 9 HOH L . ? HOH A 211 . ? 3_755 ? 6 AC1 9 DC B 1 ? DC B 1 . ? 3_655 ? 7 AC1 9 HOH M . ? HOH B 144 . ? 3_655 ? 8 AC1 9 DG C 3 ? DG C 3 . ? 1_655 ? 9 AC1 9 HOH N . ? HOH C 233 . ? 1_655 ? 10 AC2 10 DC B 1 ? DC B 1 . ? 3_645 ? 11 AC2 10 DC B 3 ? DC B 3 . ? 1_555 ? 12 AC2 10 DA B 4 ? DA B 4 . ? 1_555 ? 13 AC2 10 HOH M . ? HOH B 106 . ? 1_555 ? 14 AC2 10 DG C 1 ? DG C 1 . ? 1_545 ? 15 AC2 10 HOH N . ? HOH C 166 . ? 1_545 ? 16 AC2 10 HOH N . ? HOH C 186 . ? 1_545 ? 17 AC2 10 HOH N . ? HOH C 214 . ? 1_545 ? 18 AC2 10 DG D 6 ? DG D 6 . ? 1_545 ? 19 AC2 10 DC D 7 ? DC D 7 . ? 1_545 ? 20 AC3 5 DC B 5 ? DC B 5 . ? 1_555 ? 21 AC3 5 DG C 3 ? DG C 3 . ? 1_645 ? 22 AC3 5 HOH N . ? HOH C 225 . ? 1_645 ? 23 AC3 5 DC D 1 ? DC D 1 . ? 4_576 ? 24 AC3 5 DC D 5 ? DC D 5 . ? 1_545 ? 25 AC4 5 HOH L . ? HOH A 101 . ? 1_555 ? 26 AC4 5 XTR C 4 ? XTR C 4 . ? 4_576 ? 27 AC4 5 DG C 5 ? DG C 5 . ? 4_576 ? 28 AC4 5 DG C 7 ? DG C 7 . ? 1_555 ? 29 AC4 5 HOH N . ? HOH C 139 . ? 1_555 ? 30 AC5 7 DC A 2 ? DC A 2 . ? 4_476 ? 31 AC5 7 DG A 3 ? DG A 3 . ? 4_476 ? 32 AC5 7 HOH L . ? HOH A 167 . ? 4_476 ? 33 AC5 7 HOH L . ? HOH A 210 . ? 4_476 ? 34 AC5 7 HOH N . ? HOH C 179 . ? 4_476 ? 35 AC5 7 HOH N . ? HOH C 189 . ? 1_555 ? 36 AC5 7 DC D 1 ? DC D 1 . ? 1_545 ? 37 AC6 6 DC A 6 ? DC A 6 . ? 1_465 ? 38 AC6 6 DG A 7 ? DG A 7 . ? 1_465 ? 39 AC6 6 HOH L . ? HOH A 135 . ? 1_465 ? 40 AC6 6 HOH L . ? HOH A 226 . ? 1_465 ? 41 AC6 6 DC C 2 ? DC C 2 . ? 1_555 ? 42 AC6 6 DC D 7 ? DC D 7 . ? 3_555 ? 43 AC7 5 DG A 1 ? DG A 1 . ? 4_476 ? 44 AC7 5 DC A 2 ? DC A 2 . ? 4_476 ? 45 AC7 5 DG B 6 ? DG B 6 . ? 4_476 ? 46 AC7 5 DC B 7 ? DC B 7 . ? 4_476 ? 47 AC7 5 DG D 2 ? DG D 2 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 96.04 108.00 -11.96 0.70 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 103.17 108.00 -4.83 0.70 N 3 1 "O3'" A DG 3 ? B P A XTR 4 ? B OP2 A XTR 4 ? B 117.84 110.50 7.34 1.10 Y 4 1 "O4'" A DG 5 ? A "C1'" A DG 5 ? ? "C2'" A DG 5 ? ? 111.51 106.80 4.71 0.50 N 5 1 "O4'" A DG 5 ? B "C1'" A DG 5 ? ? "C2'" A DG 5 ? ? 101.01 105.90 -4.89 0.80 N 6 1 "O4'" A DG 5 ? A "C1'" A DG 5 ? ? N9 A DG 5 ? ? 115.82 108.30 7.52 0.30 N 7 1 "O4'" A DG 5 ? B "C1'" A DG 5 ? ? N9 A DG 5 ? ? 99.91 108.00 -8.09 0.70 N 8 1 "C3'" B DC 1 ? ? "O3'" B DC 1 ? A P B DG 2 ? A 129.70 119.70 10.00 1.20 Y 9 1 P B DG 2 ? A "O5'" B DG 2 ? A "C5'" B DG 2 ? ? 130.98 120.90 10.08 1.60 N 10 1 P B DG 2 ? B "O5'" B DG 2 ? B "C5'" B DG 2 ? ? 110.40 120.90 -10.50 1.60 N 11 1 N1 B DC 3 ? ? "C1'" B DC 3 ? ? "C2'" B DC 3 ? ? 125.84 114.30 11.54 1.40 N 12 1 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 103.30 108.00 -4.70 0.70 N 13 1 N1 B DC 5 ? ? "C1'" B DC 5 ? ? "C2'" B DC 5 ? ? 124.74 114.30 10.44 1.40 N 14 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 101.75 108.00 -6.25 0.70 N 15 1 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 98.13 108.00 -9.87 0.70 N 16 1 "O4'" C DC 2 ? ? "C1'" C DC 2 ? ? N1 C DC 2 ? ? 103.19 108.00 -4.81 0.70 N 17 1 "C3'" C DC 2 ? ? "O3'" C DC 2 ? B P C DG 3 ? B 136.66 119.70 16.96 1.20 Y 18 1 "O4'" C DG 3 ? A "C1'" C DG 3 ? ? N9 C DG 3 ? ? 113.70 108.30 5.40 0.30 N 19 1 "O4'" C DG 3 ? B "C1'" C DG 3 ? ? N9 C DG 3 ? ? 110.91 108.30 2.61 0.30 N 20 1 "O4'" C DC 6 ? ? "C1'" C DC 6 ? ? N1 C DC 6 ? ? 117.05 108.30 8.75 0.30 N 21 1 "O4'" C DG 7 ? ? "C1'" C DG 7 ? ? N9 C DG 7 ? ? 103.78 108.00 -4.22 0.70 N 22 1 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 103.49 108.00 -4.51 0.70 N 23 1 "O4'" D DC 3 ? ? "C1'" D DC 3 ? ? N1 D DC 3 ? ? 114.37 108.30 6.07 0.30 N 24 1 N1 D DC 5 ? ? "C1'" D DC 5 ? ? "C2'" D DC 5 ? ? 123.51 114.30 9.21 1.40 N 25 1 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 103.31 108.00 -4.69 0.70 N # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id "C3'" _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id XTR _pdbx_validate_chiral.auth_seq_id 4 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A XTR 4 A XTR 4 ? DT ? 2 C XTR 4 C XTR 4 ? DT ? # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.700 _diffrn_reflns.pdbx_d_res_low 19.858 _diffrn_reflns.pdbx_number_obs 8126 _diffrn_reflns.pdbx_Rmerge_I_obs 0.160 _diffrn_reflns.pdbx_Rsym_value 0.160 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 2.10 _diffrn_reflns.pdbx_redundancy 8.80 _diffrn_reflns.pdbx_percent_possible_obs 98.20 _diffrn_reflns.number 71625 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.38 19.86 ? ? 0.099 0.099 ? 7.60 97.90 1 3.80 5.38 ? ? 0.112 0.112 ? 8.60 99.40 1 3.10 3.80 ? ? 0.126 0.126 ? 8.90 99.00 1 2.69 3.10 ? ? 0.131 0.131 ? 9.40 99.90 1 2.40 2.69 ? ? 0.158 0.158 ? 9.20 99.50 1 2.19 2.40 ? ? 0.211 0.211 ? 9.30 99.20 1 2.03 2.19 ? ? 0.257 0.257 ? 8.90 99.90 1 1.90 2.03 ? ? 0.313 0.313 ? 8.90 99.20 1 1.79 1.90 ? ? 0.388 0.388 ? 8.80 99.70 1 1.70 1.79 ? ? 0.450 0.450 ? 7.90 90.80 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.Cartn_x _pdbx_phasing_MAD_set_site.Cartn_y _pdbx_phasing_MAD_set_site.Cartn_z _pdbx_phasing_MAD_set_site.occupancy _pdbx_phasing_MAD_set_site.b_iso 1 S 25.049 20.788 17.510 1.000 20.00 2 S 29.943 28.021 .886 .902 20.00 3 S 16.753 28.101 25.184 .718 20.00 4 S 13.928 27.323 36.351 .487 20.00 5 S 16.521 34.723 32.230 .470 20.00 6 S 20.917 30.007 17.408 .304 20.00 7 S 34.241 23.519 18.922 .246 20.00 8 S 7.865 22.933 39.072 .228 20.00 9 S 14.708 22.927 27.468 .212 20.00 10 S 11.628 33.007 32.299 .208 20.00 11 S 15.034 17.343 31.396 .203 20.00 12 S 23.478 25.941 7.579 .202 20.00 13 S 23.086 29.209 27.464 .197 20.00 14 S 31.106 24.615 13.289 .194 20.00 15 S 16.871 35.517 16.773 .191 20.00 16 S 18.514 34.369 37.706 .181 20.00 17 S 26.374 20.284 4.129 .178 20.00 18 S 31.302 28.773 28.094 .164 20.00 19 S 17.130 33.835 23.168 .163 20.00 20 S 8.275 26.303 43.335 .161 20.00 21 S 26.949 33.425 7.683 .160 20.00 22 S 22.651 16.467 15.283 .159 20.00 23 S 13.957 26.746 43.186 .157 20.00 24 S 33.800 28.339 4.104 .143 20.00 25 S 12.194 20.540 36.346 .139 20.00 26 S 29.516 22.549 26.362 .137 20.00 27 S 15.309 27.563 12.601 .128 20.00 28 S 31.589 33.920 .824 .125 20.00 29 S 23.053 32.937 12.777 .124 20.00 30 S 29.386 38.384 9.018 .123 20.00 31 S 21.059 35.062 6.798 .115 20.00 32 S 16.235 26.625 31.519 .095 20.00 33 S 37.694 28.211 20.906 .081 20.00 34 S 16.266 29.370 3.767 .006 20.00 # _phasing.method SAD # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 NCO CO CO N N 111 NCO N1 N N N 112 NCO N2 N N N 113 NCO N3 N N N 114 NCO N4 N N N 115 NCO N5 N N N 116 NCO N6 N N N 117 NCO HN11 H N N 118 NCO HN12 H N N 119 NCO HN13 H N N 120 NCO HN21 H N N 121 NCO HN22 H N N 122 NCO HN23 H N N 123 NCO HN31 H N N 124 NCO HN32 H N N 125 NCO HN33 H N N 126 NCO HN41 H N N 127 NCO HN42 H N N 128 NCO HN43 H N N 129 NCO HN51 H N N 130 NCO HN52 H N N 131 NCO HN53 H N N 132 NCO HN61 H N N 133 NCO HN62 H N N 134 NCO HN63 H N N 135 XTR OP3 O N N 136 XTR "C4'" C N R 137 XTR "C7'" C N N 138 XTR "C6'" C N N 139 XTR "C1'" C N S 140 XTR O4 O N N 141 XTR C4 C N N 142 XTR C5 C N N 143 XTR C5M C N N 144 XTR C6 C N N 145 XTR N3 N N N 146 XTR C2 C N N 147 XTR O2 O N N 148 XTR N1 N N N 149 XTR "C2'" C N N 150 XTR "C3'" C N S 151 XTR P P N N 152 XTR OP1 O N N 153 XTR OP2 O N N 154 XTR "O5'" O N N 155 XTR "C5'" C N N 156 XTR "O3'" O N N 157 XTR HOP3 H N N 158 XTR "H4'" H N N 159 XTR "H7'" H N N 160 XTR "H6'" H N N 161 XTR "H1'" H N N 162 XTR H5M H N N 163 XTR H5MA H N N 164 XTR H5MB H N N 165 XTR H6 H N N 166 XTR HN3 H N N 167 XTR "H2'" H N N 168 XTR "H2'A" H N N 169 XTR "H3'" H N N 170 XTR "H5'" H N N 171 XTR "H5'A" H N N 172 XTR "HO3'" H N N 173 XTR HOP2 H N N 174 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 NCO CO N1 sing N N 115 NCO CO N2 sing N N 116 NCO CO N3 sing N N 117 NCO CO N4 sing N N 118 NCO CO N5 sing N N 119 NCO CO N6 sing N N 120 NCO N1 HN11 sing N N 121 NCO N1 HN12 sing N N 122 NCO N1 HN13 sing N N 123 NCO N2 HN21 sing N N 124 NCO N2 HN22 sing N N 125 NCO N2 HN23 sing N N 126 NCO N3 HN31 sing N N 127 NCO N3 HN32 sing N N 128 NCO N3 HN33 sing N N 129 NCO N4 HN41 sing N N 130 NCO N4 HN42 sing N N 131 NCO N4 HN43 sing N N 132 NCO N5 HN51 sing N N 133 NCO N5 HN52 sing N N 134 NCO N5 HN53 sing N N 135 NCO N6 HN61 sing N N 136 NCO N6 HN62 sing N N 137 NCO N6 HN63 sing N N 138 XTR OP3 HOP3 sing N N 139 XTR "C4'" "C6'" sing N N 140 XTR "C4'" "H4'" sing N N 141 XTR "C7'" "C6'" doub N N 142 XTR "C7'" "H7'" sing N N 143 XTR "C6'" "H6'" sing N N 144 XTR "C1'" "C7'" sing N N 145 XTR "C1'" N1 sing N N 146 XTR "C1'" "H1'" sing N N 147 XTR C4 O4 doub N N 148 XTR C5 C4 sing N N 149 XTR C5 C5M sing N N 150 XTR C5M H5M sing N N 151 XTR C5M H5MA sing N N 152 XTR C5M H5MB sing N N 153 XTR C6 C5 doub N N 154 XTR C6 H6 sing N N 155 XTR N3 C4 sing N N 156 XTR N3 HN3 sing N N 157 XTR C2 N3 sing N N 158 XTR O2 C2 doub N N 159 XTR N1 C6 sing N N 160 XTR N1 C2 sing N N 161 XTR "C2'" "C1'" sing N N 162 XTR "C2'" "C3'" sing N N 163 XTR "C2'" "H2'" sing N N 164 XTR "C2'" "H2'A" sing N N 165 XTR "C3'" "C4'" sing N N 166 XTR "C3'" "H3'" sing N N 167 XTR P OP3 sing N N 168 XTR P OP1 doub N N 169 XTR OP2 P sing N N 170 XTR "O5'" P sing N N 171 XTR "C5'" "C4'" sing N N 172 XTR "C5'" "O5'" sing N N 173 XTR "C5'" "H5'" sing N N 174 XTR "C5'" "H5'A" sing N N 175 XTR "O3'" "C3'" sing N N 176 XTR "O3'" "HO3'" sing N N 177 XTR OP2 HOP2 sing N N 178 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3FL6 'double helix' 3FL6 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 7 1_555 -0.235 -0.140 -0.065 -22.604 -9.149 -2.209 1 A_DG1:DC7_B A 1 ? B 7 ? 19 1 1 A DC 2 1_555 B DG 6 1_555 0.130 -0.134 0.317 -14.581 1.197 -0.703 2 A_DC2:DG6_B A 2 ? B 6 ? 19 1 1 A DG 3 1_555 B DC 5 1_555 -0.151 -0.113 -0.076 0.666 -7.165 -0.338 3 A_DG3:DC5_B A 3 ? B 5 ? 19 1 1 A XTR 4 1_555 B DA 4 1_555 -0.084 -0.102 0.030 -1.031 -9.883 -4.729 4 A_XTR4:DA4_B A 4 ? B 4 ? 20 1 1 A DG 5 1_555 B DC 3 1_555 -0.198 -0.171 0.329 2.519 -8.005 -1.877 5 A_DG5:DC3_B A 5 ? B 3 ? 19 1 1 A DC 6 1_555 B DG 2 1_555 0.232 -0.139 -0.100 5.779 2.059 -0.909 6 A_DC6:DG2_B A 6 ? B 2 ? 19 1 1 C DG 1 1_555 D DC 7 1_555 -0.253 -0.136 0.150 -13.102 -9.647 -2.036 7 C_DG1:DC7_D C 1 ? D 7 ? 19 1 1 C DC 2 1_555 D DG 6 1_555 0.230 -0.131 0.381 -12.191 -1.836 -0.404 8 C_DC2:DG6_D C 2 ? D 6 ? 19 1 1 C DG 3 1_555 D DC 5 1_555 -0.175 -0.157 0.202 6.633 -9.842 -1.391 9 C_DG3:DC5_D C 3 ? D 5 ? 19 1 1 C XTR 4 1_555 D DA 4 1_555 -0.263 -0.067 0.293 -12.748 -19.300 -9.573 10 C_XTR4:DA4_D C 4 ? D 4 ? 20 1 1 C DG 5 1_555 D DC 3 1_555 -0.218 -0.117 -0.304 -16.802 2.888 -0.296 11 C_DG5:DC3_D C 5 ? D 3 ? 19 1 1 C DC 6 1_555 D DG 2 1_555 0.203 -0.180 -0.358 12.547 16.443 -2.946 12 C_DC6:DG2_D C 6 ? D 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 7 1_555 A DC 2 1_555 B DG 6 1_555 0.880 0.759 3.167 -3.326 -3.535 36.719 1.645 -1.808 2.995 -5.581 5.251 37.027 1 AA_DG1DC2:DG6DC7_BB A 1 ? B 7 ? A 2 ? B 6 ? 1 A DC 2 1_555 B DG 6 1_555 A DG 3 1_555 B DC 5 1_555 -0.190 0.708 3.042 2.392 8.308 25.819 -0.501 0.982 3.085 17.963 -5.171 27.205 2 AA_DC2DG3:DC5DG6_BB A 2 ? B 6 ? A 3 ? B 5 ? 1 A DG 3 1_555 B DC 5 1_555 A XTR 4 1_555 B DA 4 1_555 -0.403 -0.176 3.367 -0.598 0.374 33.969 -0.364 0.591 3.372 0.640 1.024 33.976 3 AA_DG3XTR4:DA4DC5_BB A 3 ? B 5 ? A 4 ? B 4 ? 1 A XTR 4 1_555 B DA 4 1_555 A DG 5 1_555 B DC 3 1_555 0.161 0.333 3.221 -4.978 6.080 40.775 -0.170 -0.751 3.196 8.630 7.066 41.493 4 AA_XTR4DG5:DC3DA4_BB A 4 ? B 4 ? A 5 ? B 3 ? 1 A DG 5 1_555 B DC 3 1_555 A DC 6 1_555 B DG 2 1_555 0.130 -0.247 3.347 3.608 -1.284 28.959 -0.203 0.547 3.346 -2.553 -7.175 29.206 5 AA_DG5DC6:DG2DC3_BB A 5 ? B 3 ? A 6 ? B 2 ? 1 C DG 1 1_555 D DC 7 1_555 C DC 2 1_555 D DG 6 1_555 0.764 0.765 3.522 -1.712 -11.524 40.141 2.339 -1.261 3.161 -16.376 2.432 41.731 6 CC_DG1DC2:DG6DC7_DD C 1 ? D 7 ? C 2 ? D 6 ? 1 C DC 2 1_555 D DG 6 1_555 C DG 3 1_555 D DC 5 1_555 0.051 0.920 3.013 1.107 6.336 26.937 0.459 0.149 3.142 13.361 -2.334 27.681 7 CC_DC2DG3:DC5DG6_DD C 2 ? D 6 ? C 3 ? D 5 ? 1 C DG 3 1_555 D DC 5 1_555 C XTR 4 1_555 D DA 4 1_555 -0.861 -0.707 3.801 -3.096 -3.133 37.886 -0.615 0.855 3.901 -4.806 4.748 38.131 8 CC_DG3XTR4:DA4DC5_DD C 3 ? D 5 ? C 4 ? D 4 ? 1 C XTR 4 1_555 D DA 4 1_555 C DG 5 1_555 D DC 3 1_555 1.725 -0.385 3.442 8.377 -0.139 34.481 -0.610 -1.463 3.747 -0.230 -13.879 35.454 9 CC_XTR4DG5:DC3DA4_DD C 4 ? D 4 ? C 5 ? D 3 ? 1 C DG 5 1_555 D DC 3 1_555 C DC 6 1_555 D DG 2 1_555 -0.162 -0.206 2.803 3.649 10.913 18.145 -4.253 1.672 2.242 30.896 -10.330 21.460 10 CC_DG5DC6:DG2DC3_DD C 5 ? D 3 ? C 6 ? D 2 ? # _atom_sites.entry_id 3FL6 _atom_sites.fract_transf_matrix[1][1] 0.038880 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029789 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012315 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CO N O P # loop_