HEADER PROTEIN BINDING 19-DEC-08 3FMA TITLE CRYSTAL STRUCTURE OF THE GYF DOMAIN OF SMY2 IN COMPLEX WITH A PROLINE- TITLE 2 RICH PEPTIDE FROM BBP/SCSF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SMY2; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: GYF DOMAIN; COMPND 5 SYNONYM: SUPPRESSOR OF MYO2-66 PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BRANCHPOINT-BRIDGING PROTEIN; COMPND 9 CHAIN: L, M, N, O, P; COMPND 10 FRAGMENT: PROLINE-RICH PEPTIDE; COMPND 11 SYNONYM: SPLICING FACTOR 1, ZINC FINGER PROTEIN BBP, MUD SYNTHETIC- COMPND 12 LETHAL 5 PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SMY2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: FMOC SOLID PHASE SYNTHESIS KEYWDS GYF DOMAIN, POLY-PROLINE BINDING, PROLINE-RICH PEPTIDE, DOMAIN SWAP, KEYWDS 2 PRS, RAGNYA, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.R.ASH,K.FAELBER REVDAT 3 01-NOV-17 3FMA 1 REMARK REVDAT 2 13-JUL-11 3FMA 1 VERSN REVDAT 1 22-DEC-09 3FMA 0 JRNL AUTH M.R.ASH,K.FAELBER,D.KOSSLICK,G.ALBERT,Y.ROSKE,M.KOFLER, JRNL AUTH 2 M.SCHUEMANN,E.KRAUSE,C.FREUND JRNL TITL SMY2-TYPE GYF DOMAIN RECOGNITION IN MRNA SURVEILLANCE JRNL TITL 2 COMPLEXES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1411 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1922 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3596 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 64.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.10000 REMARK 3 B22 (A**2) : -2.10000 REMARK 3 B33 (A**2) : 4.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.313 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.043 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3704 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5042 ; 1.557 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 449 ; 5.058 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;38.036 ;24.481 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 600 ;14.782 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.794 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 569 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2769 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2262 ; 0.291 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3696 ; 0.557 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1442 ; 0.838 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1344 ; 1.373 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B E C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 13 B 96 4 REMARK 3 1 E 12 E 96 4 REMARK 3 1 C 12 C 96 4 REMARK 3 1 D 12 D 96 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 B (A): 670 ; 0.340 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 E (A): 670 ; 0.310 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 670 ; 0.320 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 D (A): 670 ; 0.380 ; 0.500 REMARK 3 MEDIUM THERMAL 1 B (A**2): 670 ; 0.300 ; 2.000 REMARK 3 MEDIUM THERMAL 1 E (A**2): 670 ; 0.200 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 670 ; 0.270 ; 2.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 670 ; 0.200 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 93 REMARK 3 RESIDUE RANGE : L 4 L 10 REMARK 3 ORIGIN FOR THE GROUP (A): -39.7520 -52.7920 22.1810 REMARK 3 T TENSOR REMARK 3 T11: 0.4661 T22: 0.1032 REMARK 3 T33: 0.2340 T12: -0.1806 REMARK 3 T13: 0.0263 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 3.7949 L22: 3.5878 REMARK 3 L33: 2.9598 L12: 0.1714 REMARK 3 L13: 0.1060 L23: 0.6196 REMARK 3 S TENSOR REMARK 3 S11: -0.2337 S12: 0.2940 S13: -0.0497 REMARK 3 S21: -0.4066 S22: 0.2535 S23: 0.5152 REMARK 3 S31: 0.1673 S32: -0.1703 S33: -0.0198 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 96 REMARK 3 RESIDUE RANGE : M 3 M 9 REMARK 3 ORIGIN FOR THE GROUP (A): -31.9690 -26.4000 29.4910 REMARK 3 T TENSOR REMARK 3 T11: 0.4714 T22: 0.0675 REMARK 3 T33: 0.2465 T12: -0.0687 REMARK 3 T13: 0.0177 T23: 0.0811 REMARK 3 L TENSOR REMARK 3 L11: 1.4994 L22: 4.8243 REMARK 3 L33: 2.4677 L12: 0.6469 REMARK 3 L13: 0.3707 L23: 2.0776 REMARK 3 S TENSOR REMARK 3 S11: -0.2407 S12: 0.1591 S13: 0.2898 REMARK 3 S21: -0.3336 S22: 0.2199 S23: 0.6401 REMARK 3 S31: -0.3478 S32: -0.0797 S33: 0.0209 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 11 C 96 REMARK 3 RESIDUE RANGE : N 4 N 9 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9740 -32.3550 20.8090 REMARK 3 T TENSOR REMARK 3 T11: 0.5616 T22: 0.2582 REMARK 3 T33: 0.2361 T12: -0.2131 REMARK 3 T13: 0.0958 T23: -0.0629 REMARK 3 L TENSOR REMARK 3 L11: 2.1001 L22: 3.5301 REMARK 3 L33: 3.2475 L12: 1.8161 REMARK 3 L13: -1.0176 L23: -2.9189 REMARK 3 S TENSOR REMARK 3 S11: -0.2704 S12: 0.1631 S13: -0.1898 REMARK 3 S21: -0.0515 S22: 0.1032 S23: -0.3534 REMARK 3 S31: -0.0988 S32: 0.2994 S33: 0.1672 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 12 D 96 REMARK 3 RESIDUE RANGE : O 4 O 10 REMARK 3 ORIGIN FOR THE GROUP (A): -18.9220 -60.8680 28.8330 REMARK 3 T TENSOR REMARK 3 T11: 0.5078 T22: 0.1106 REMARK 3 T33: 0.3181 T12: -0.0164 REMARK 3 T13: 0.1305 T23: -0.0774 REMARK 3 L TENSOR REMARK 3 L11: 0.8325 L22: 5.7561 REMARK 3 L33: 3.1981 L12: 0.5389 REMARK 3 L13: 0.1170 L23: -2.5882 REMARK 3 S TENSOR REMARK 3 S11: -0.1316 S12: 0.1964 S13: -0.1858 REMARK 3 S21: -0.4844 S22: 0.2047 S23: -0.5261 REMARK 3 S31: 0.3548 S32: 0.2131 S33: -0.0731 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 12 E 96 REMARK 3 RESIDUE RANGE : P 4 P 10 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5570 -18.1250 4.1080 REMARK 3 T TENSOR REMARK 3 T11: 0.4279 T22: 0.2091 REMARK 3 T33: 0.2006 T12: -0.1934 REMARK 3 T13: -0.0445 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 2.2991 L22: 4.5670 REMARK 3 L33: 3.7976 L12: 1.8861 REMARK 3 L13: -2.1176 L23: -2.1877 REMARK 3 S TENSOR REMARK 3 S11: -0.0990 S12: 0.1369 S13: -0.5088 REMARK 3 S21: 0.1318 S22: -0.0576 S23: -0.4327 REMARK 3 S31: 0.6286 S32: -0.0431 S33: 0.1566 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3FMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978522, 0.97875 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27942 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.057 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.10 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.87800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M (NH4)2SO4, 0.1M BICINE, PH 9.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.70000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.35000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.70000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.35000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.70000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.70000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.35000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.70000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.70000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.35000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 GLY A 4 REMARK 465 MSE A 5 REMARK 465 SER A 6 REMARK 465 GLN A 7 REMARK 465 LEU A 8 REMARK 465 PRO A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 VAL A 12 REMARK 465 GLN A 94 REMARK 465 THR A 95 REMARK 465 THR A 96 REMARK 465 SER A 97 REMARK 465 SER A 98 REMARK 465 ASP A 99 REMARK 465 SER A 100 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 GLY B 4 REMARK 465 MSE B 5 REMARK 465 SER B 6 REMARK 465 GLN B 7 REMARK 465 LEU B 8 REMARK 465 PRO B 9 REMARK 465 ALA B 10 REMARK 465 PRO B 11 REMARK 465 VAL B 12 REMARK 465 SER B 97 REMARK 465 SER B 98 REMARK 465 ASP B 99 REMARK 465 SER B 100 REMARK 465 GLY C 1 REMARK 465 SER C 2 REMARK 465 ASN C 3 REMARK 465 GLY C 4 REMARK 465 MSE C 5 REMARK 465 SER C 6 REMARK 465 GLN C 7 REMARK 465 LEU C 8 REMARK 465 PRO C 9 REMARK 465 ALA C 10 REMARK 465 SER C 97 REMARK 465 SER C 98 REMARK 465 ASP C 99 REMARK 465 SER C 100 REMARK 465 GLY D 1 REMARK 465 SER D 2 REMARK 465 ASN D 3 REMARK 465 GLY D 4 REMARK 465 MSE D 5 REMARK 465 SER D 6 REMARK 465 GLN D 7 REMARK 465 LEU D 8 REMARK 465 PRO D 9 REMARK 465 ALA D 10 REMARK 465 PRO D 11 REMARK 465 SER D 97 REMARK 465 SER D 98 REMARK 465 ASP D 99 REMARK 465 SER D 100 REMARK 465 GLY E 1 REMARK 465 SER E 2 REMARK 465 ASN E 3 REMARK 465 GLY E 4 REMARK 465 MSE E 5 REMARK 465 SER E 6 REMARK 465 GLN E 7 REMARK 465 LEU E 8 REMARK 465 PRO E 9 REMARK 465 ALA E 10 REMARK 465 PRO E 11 REMARK 465 SER E 97 REMARK 465 SER E 98 REMARK 465 ASP E 99 REMARK 465 SER E 100 REMARK 465 SER L 1 REMARK 465 SER L 2 REMARK 465 ILE L 3 REMARK 465 GLY L 11 REMARK 465 SER M 1 REMARK 465 SER M 2 REMARK 465 SER M 10 REMARK 465 GLY M 11 REMARK 465 SER N 1 REMARK 465 SER N 2 REMARK 465 ILE N 3 REMARK 465 SER N 10 REMARK 465 GLY N 11 REMARK 465 SER O 1 REMARK 465 SER O 2 REMARK 465 ILE O 3 REMARK 465 GLY O 11 REMARK 465 SER P 1 REMARK 465 SER P 2 REMARK 465 ILE P 3 REMARK 465 GLY P 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 65 12.41 58.70 REMARK 500 GLU A 78 -7.80 66.67 REMARK 500 ASP A 81 -75.11 -91.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L2Z RELATED DB: PDB REMARK 900 CD2BP2-GYF DOMAIN IN COMPLEX WITH PROLINE-RICH CD2 TAIL SEGMENT REMARK 900 PEPTIDE DBREF 3FMA A 3 100 UNP P32909 SMY2_YEAST 193 290 DBREF 3FMA B 3 100 UNP P32909 SMY2_YEAST 193 290 DBREF 3FMA C 3 100 UNP P32909 SMY2_YEAST 193 290 DBREF 3FMA D 3 100 UNP P32909 SMY2_YEAST 193 290 DBREF 3FMA E 3 100 UNP P32909 SMY2_YEAST 193 290 DBREF 3FMA L 1 11 UNP Q12186 BBP_YEAST 440 450 DBREF 3FMA M 1 11 UNP Q12186 BBP_YEAST 440 450 DBREF 3FMA N 1 11 UNP Q12186 BBP_YEAST 440 450 DBREF 3FMA O 1 11 UNP Q12186 BBP_YEAST 440 450 DBREF 3FMA P 1 11 UNP Q12186 BBP_YEAST 440 450 SEQADV 3FMA GLY A 1 UNP P32909 EXPRESSION TAG SEQADV 3FMA SER A 2 UNP P32909 EXPRESSION TAG SEQADV 3FMA GLY B 1 UNP P32909 EXPRESSION TAG SEQADV 3FMA SER B 2 UNP P32909 EXPRESSION TAG SEQADV 3FMA GLY C 1 UNP P32909 EXPRESSION TAG SEQADV 3FMA SER C 2 UNP P32909 EXPRESSION TAG SEQADV 3FMA GLY D 1 UNP P32909 EXPRESSION TAG SEQADV 3FMA SER D 2 UNP P32909 EXPRESSION TAG SEQADV 3FMA GLY E 1 UNP P32909 EXPRESSION TAG SEQADV 3FMA SER E 2 UNP P32909 EXPRESSION TAG SEQRES 1 A 100 GLY SER ASN GLY MSE SER GLN LEU PRO ALA PRO VAL SER SEQRES 2 A 100 VAL GLU SER SER TRP ARG TYR ILE ASP THR GLN GLY GLN SEQRES 3 A 100 ILE HIS GLY PRO PHE THR THR GLN MSE MSE SER GLN TRP SEQRES 4 A 100 TYR ILE GLY GLY TYR PHE ALA SER THR LEU GLN ILE SER SEQRES 5 A 100 ARG LEU GLY SER THR PRO GLU THR LEU GLY ILE ASN ASP SEQRES 6 A 100 ILE PHE ILE THR LEU GLY GLU LEU MSE THR LYS LEU GLU SEQRES 7 A 100 LYS TYR ASP THR ASP PRO PHE THR THR PHE ASP LYS LEU SEQRES 8 A 100 HIS VAL GLN THR THR SER SER ASP SER SEQRES 1 B 100 GLY SER ASN GLY MSE SER GLN LEU PRO ALA PRO VAL SER SEQRES 2 B 100 VAL GLU SER SER TRP ARG TYR ILE ASP THR GLN GLY GLN SEQRES 3 B 100 ILE HIS GLY PRO PHE THR THR GLN MSE MSE SER GLN TRP SEQRES 4 B 100 TYR ILE GLY GLY TYR PHE ALA SER THR LEU GLN ILE SER SEQRES 5 B 100 ARG LEU GLY SER THR PRO GLU THR LEU GLY ILE ASN ASP SEQRES 6 B 100 ILE PHE ILE THR LEU GLY GLU LEU MSE THR LYS LEU GLU SEQRES 7 B 100 LYS TYR ASP THR ASP PRO PHE THR THR PHE ASP LYS LEU SEQRES 8 B 100 HIS VAL GLN THR THR SER SER ASP SER SEQRES 1 C 100 GLY SER ASN GLY MSE SER GLN LEU PRO ALA PRO VAL SER SEQRES 2 C 100 VAL GLU SER SER TRP ARG TYR ILE ASP THR GLN GLY GLN SEQRES 3 C 100 ILE HIS GLY PRO PHE THR THR GLN MSE MSE SER GLN TRP SEQRES 4 C 100 TYR ILE GLY GLY TYR PHE ALA SER THR LEU GLN ILE SER SEQRES 5 C 100 ARG LEU GLY SER THR PRO GLU THR LEU GLY ILE ASN ASP SEQRES 6 C 100 ILE PHE ILE THR LEU GLY GLU LEU MSE THR LYS LEU GLU SEQRES 7 C 100 LYS TYR ASP THR ASP PRO PHE THR THR PHE ASP LYS LEU SEQRES 8 C 100 HIS VAL GLN THR THR SER SER ASP SER SEQRES 1 D 100 GLY SER ASN GLY MSE SER GLN LEU PRO ALA PRO VAL SER SEQRES 2 D 100 VAL GLU SER SER TRP ARG TYR ILE ASP THR GLN GLY GLN SEQRES 3 D 100 ILE HIS GLY PRO PHE THR THR GLN MSE MSE SER GLN TRP SEQRES 4 D 100 TYR ILE GLY GLY TYR PHE ALA SER THR LEU GLN ILE SER SEQRES 5 D 100 ARG LEU GLY SER THR PRO GLU THR LEU GLY ILE ASN ASP SEQRES 6 D 100 ILE PHE ILE THR LEU GLY GLU LEU MSE THR LYS LEU GLU SEQRES 7 D 100 LYS TYR ASP THR ASP PRO PHE THR THR PHE ASP LYS LEU SEQRES 8 D 100 HIS VAL GLN THR THR SER SER ASP SER SEQRES 1 E 100 GLY SER ASN GLY MSE SER GLN LEU PRO ALA PRO VAL SER SEQRES 2 E 100 VAL GLU SER SER TRP ARG TYR ILE ASP THR GLN GLY GLN SEQRES 3 E 100 ILE HIS GLY PRO PHE THR THR GLN MSE MSE SER GLN TRP SEQRES 4 E 100 TYR ILE GLY GLY TYR PHE ALA SER THR LEU GLN ILE SER SEQRES 5 E 100 ARG LEU GLY SER THR PRO GLU THR LEU GLY ILE ASN ASP SEQRES 6 E 100 ILE PHE ILE THR LEU GLY GLU LEU MSE THR LYS LEU GLU SEQRES 7 E 100 LYS TYR ASP THR ASP PRO PHE THR THR PHE ASP LYS LEU SEQRES 8 E 100 HIS VAL GLN THR THR SER SER ASP SER SEQRES 1 L 11 SER SER ILE ALA PRO PRO PRO GLY LEU SER GLY SEQRES 1 M 11 SER SER ILE ALA PRO PRO PRO GLY LEU SER GLY SEQRES 1 N 11 SER SER ILE ALA PRO PRO PRO GLY LEU SER GLY SEQRES 1 O 11 SER SER ILE ALA PRO PRO PRO GLY LEU SER GLY SEQRES 1 P 11 SER SER ILE ALA PRO PRO PRO GLY LEU SER GLY MODRES 3FMA MSE A 35 MET SELENOMETHIONINE MODRES 3FMA MSE A 36 MET SELENOMETHIONINE MODRES 3FMA MSE A 74 MET SELENOMETHIONINE MODRES 3FMA MSE B 35 MET SELENOMETHIONINE MODRES 3FMA MSE B 36 MET SELENOMETHIONINE MODRES 3FMA MSE B 74 MET SELENOMETHIONINE MODRES 3FMA MSE C 35 MET SELENOMETHIONINE MODRES 3FMA MSE C 36 MET SELENOMETHIONINE MODRES 3FMA MSE C 74 MET SELENOMETHIONINE MODRES 3FMA MSE D 35 MET SELENOMETHIONINE MODRES 3FMA MSE D 36 MET SELENOMETHIONINE MODRES 3FMA MSE D 74 MET SELENOMETHIONINE MODRES 3FMA MSE E 35 MET SELENOMETHIONINE MODRES 3FMA MSE E 36 MET SELENOMETHIONINE MODRES 3FMA MSE E 74 MET SELENOMETHIONINE HET MSE A 35 13 HET MSE A 36 8 HET MSE A 74 8 HET MSE B 35 8 HET MSE B 36 8 HET MSE B 74 8 HET MSE C 35 13 HET MSE C 36 8 HET MSE C 74 8 HET MSE D 35 8 HET MSE D 36 8 HET MSE D 74 8 HET MSE E 35 8 HET MSE E 36 8 HET MSE E 74 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 11 HOH *3(H2 O) HELIX 1 1 THR A 33 GLY A 43 1 11 HELIX 2 2 LEU A 70 GLU A 78 1 9 HELIX 3 3 ASP A 83 VAL A 93 1 11 HELIX 4 4 THR B 33 GLY B 42 1 10 HELIX 5 5 LEU B 70 TYR B 80 1 11 HELIX 6 6 ASP B 83 VAL B 93 1 11 HELIX 7 7 THR C 33 GLY C 42 1 10 HELIX 8 8 LEU C 70 TYR C 80 1 11 HELIX 9 9 ASP C 83 HIS C 92 1 10 HELIX 10 10 THR D 33 GLY D 42 1 10 HELIX 11 11 LEU D 70 ASP D 81 1 12 HELIX 12 12 ASP D 83 HIS D 92 1 10 HELIX 13 13 THR E 33 GLY E 42 1 10 HELIX 14 14 LEU E 70 TYR E 80 1 11 HELIX 15 15 ASP E 83 VAL E 93 1 11 SHEET 1 A 4 ILE A 27 THR A 32 0 SHEET 2 A 4 SER A 17 ILE A 21 -1 N TRP A 18 O PHE A 31 SHEET 3 A 4 GLN A 50 ARG A 53 -1 O GLN A 50 N ILE A 21 SHEET 4 A 4 ILE A 68 THR A 69 -1 O ILE A 68 N ILE A 51 SHEET 1 B 4 ILE B 27 THR B 32 0 SHEET 2 B 4 SER B 17 ILE B 21 -1 N TYR B 20 O HIS B 28 SHEET 3 B 4 GLN B 50 ARG B 53 -1 O GLN B 50 N ILE B 21 SHEET 4 B 4 ILE B 68 THR B 69 -1 O ILE B 68 N ILE B 51 SHEET 1 C 4 ILE C 27 THR C 32 0 SHEET 2 C 4 SER C 17 ILE C 21 -1 N TYR C 20 O HIS C 28 SHEET 3 C 4 GLN C 50 ARG C 53 -1 O SER C 52 N ARG C 19 SHEET 4 C 4 ILE C 68 THR C 69 -1 O ILE C 68 N ILE C 51 SHEET 1 D 4 ILE D 27 THR D 32 0 SHEET 2 D 4 SER D 17 ILE D 21 -1 N TYR D 20 O HIS D 28 SHEET 3 D 4 GLN D 50 ARG D 53 -1 O SER D 52 N ARG D 19 SHEET 4 D 4 ILE D 68 THR D 69 -1 O ILE D 68 N ILE D 51 SHEET 1 E 4 ILE E 27 THR E 32 0 SHEET 2 E 4 SER E 17 ILE E 21 -1 N TRP E 18 O PHE E 31 SHEET 3 E 4 GLN E 50 ARG E 53 -1 O SER E 52 N ARG E 19 SHEET 4 E 4 ILE E 68 THR E 69 -1 O ILE E 68 N ILE E 51 LINK C GLN A 34 N MSE A 35 1555 1555 1.33 LINK C MSE A 35 N MSE A 36 1555 1555 1.34 LINK C MSE A 36 N SER A 37 1555 1555 1.33 LINK C LEU A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N THR A 75 1555 1555 1.34 LINK C GLN B 34 N MSE B 35 1555 1555 1.33 LINK C MSE B 35 N MSE B 36 1555 1555 1.33 LINK C MSE B 36 N SER B 37 1555 1555 1.33 LINK C LEU B 73 N MSE B 74 1555 1555 1.33 LINK C MSE B 74 N THR B 75 1555 1555 1.33 LINK C GLN C 34 N MSE C 35 1555 1555 1.34 LINK C MSE C 35 N MSE C 36 1555 1555 1.34 LINK C MSE C 36 N SER C 37 1555 1555 1.33 LINK C LEU C 73 N MSE C 74 1555 1555 1.33 LINK C MSE C 74 N THR C 75 1555 1555 1.33 LINK C GLN D 34 N MSE D 35 1555 1555 1.34 LINK C MSE D 35 N MSE D 36 1555 1555 1.33 LINK C MSE D 36 N SER D 37 1555 1555 1.33 LINK C LEU D 73 N MSE D 74 1555 1555 1.33 LINK C MSE D 74 N THR D 75 1555 1555 1.33 LINK C GLN E 34 N MSE E 35 1555 1555 1.33 LINK C MSE E 35 N MSE E 36 1555 1555 1.33 LINK C MSE E 36 N SER E 37 1555 1555 1.33 LINK C LEU E 73 N MSE E 74 1555 1555 1.33 LINK C MSE E 74 N THR E 75 1555 1555 1.34 CISPEP 1 GLY A 29 PRO A 30 0 -3.68 CISPEP 2 GLY B 29 PRO B 30 0 -2.28 CISPEP 3 GLY C 29 PRO C 30 0 -9.16 CISPEP 4 GLY D 29 PRO D 30 0 -2.13 CISPEP 5 GLY E 29 PRO E 30 0 -3.60 CRYST1 101.400 101.400 150.700 90.00 90.00 90.00 P 42 21 2 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009866 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009866 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006634 0.00000