data_3FMS # _entry.id 3FMS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FMS pdb_00003fms 10.2210/pdb3fms/pdb RCSB RCSB050782 ? ? WWPDB D_1000050782 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2009-02-10 _pdbx_database_PDB_obs_spr.pdb_id 3FMS _pdbx_database_PDB_obs_spr.replace_pdb_id 3DBW _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ISFI335 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3FMS _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-12-22 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zheng, M.' 1 'Cooper, D.R.' 2 'Yu, M.' 3 'Hung, L.-W.' 4 'Derewenda, U.' 5 'Derewenda, Z.S.' 6 'Integrated Center for Structure and Function Innovation (ISFI)' 7 # _citation.id primary _citation.title ;Structure of Thermotoga maritima TM0439: implications for the mechanism of bacterial GntR transcription regulators with Zn2+-binding FCD domains. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 65 _citation.page_first 356 _citation.page_last 365 _citation.year 2009 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19307717 _citation.pdbx_database_id_DOI 10.1107/S0907444909004727 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zheng, M.' 1 ? primary 'Cooper, D.R.' 2 ? primary 'Grossoehme, N.E.' 3 ? primary 'Yu, M.' 4 ? primary 'Hung, L.W.' 5 ? primary 'Cieslik, M.' 6 ? primary 'Derewenda, U.' 7 ? primary 'Lesley, S.A.' 8 ? primary 'Wilson, I.A.' 9 ? primary 'Giedroc, D.P.' 10 ? primary 'Derewenda, Z.S.' 11 ? # _cell.length_a 85.188 _cell.length_b 71.718 _cell.length_c 43.323 _cell.angle_alpha 90.000 _cell.angle_beta 104.590 _cell.angle_gamma 90.000 _cell.entry_id 3FMS _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3FMS _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator, GntR family' 24513.697 1 ? 'E118A, K119A, K122A' ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 4 water nat water 18.015 81 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;VDLVRTKVYNLLKE(MSE)ILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEKFIRE TIETRI(MSE)(MSE)EVFCLENYFDKIAGSEELLEIKGEIDDVAASAAREIFDDSDERLHKLFIRASGNELIISLYEKI WDRIDLVRHLNERYVVSNREHKELIERIISGDKEGAIEKLKEHLKNVEAETIKNLYTYERS ; _entity_poly.pdbx_seq_one_letter_code_can ;VDLVRTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEKFIRETIET RIMMEVFCLENYFDKIAGSEELLEIKGEIDDVAASAAREIFDDSDERLHKLFIRASGNELIISLYEKIWDRIDLVRHLNE RYVVSNREHKELIERIISGDKEGAIEKLKEHLKNVEAETIKNLYTYERS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ISFI335 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ASP n 1 3 LEU n 1 4 VAL n 1 5 ARG n 1 6 THR n 1 7 LYS n 1 8 VAL n 1 9 TYR n 1 10 ASN n 1 11 LEU n 1 12 LEU n 1 13 LYS n 1 14 GLU n 1 15 MSE n 1 16 ILE n 1 17 LEU n 1 18 ASN n 1 19 HIS n 1 20 GLU n 1 21 LEU n 1 22 LYS n 1 23 LEU n 1 24 GLY n 1 25 GLU n 1 26 LYS n 1 27 LEU n 1 28 ASN n 1 29 VAL n 1 30 ARG n 1 31 GLU n 1 32 LEU n 1 33 SER n 1 34 GLU n 1 35 LYS n 1 36 LEU n 1 37 GLY n 1 38 ILE n 1 39 SER n 1 40 PHE n 1 41 THR n 1 42 PRO n 1 43 VAL n 1 44 ARG n 1 45 ASP n 1 46 ALA n 1 47 LEU n 1 48 LEU n 1 49 GLN n 1 50 LEU n 1 51 ALA n 1 52 THR n 1 53 GLU n 1 54 GLY n 1 55 LEU n 1 56 VAL n 1 57 LYS n 1 58 VAL n 1 59 VAL n 1 60 PRO n 1 61 ARG n 1 62 VAL n 1 63 GLY n 1 64 PHE n 1 65 PHE n 1 66 VAL n 1 67 THR n 1 68 ASP n 1 69 VAL n 1 70 ASP n 1 71 GLU n 1 72 LYS n 1 73 PHE n 1 74 ILE n 1 75 ARG n 1 76 GLU n 1 77 THR n 1 78 ILE n 1 79 GLU n 1 80 THR n 1 81 ARG n 1 82 ILE n 1 83 MSE n 1 84 MSE n 1 85 GLU n 1 86 VAL n 1 87 PHE n 1 88 CYS n 1 89 LEU n 1 90 GLU n 1 91 ASN n 1 92 TYR n 1 93 PHE n 1 94 ASP n 1 95 LYS n 1 96 ILE n 1 97 ALA n 1 98 GLY n 1 99 SER n 1 100 GLU n 1 101 GLU n 1 102 LEU n 1 103 LEU n 1 104 GLU n 1 105 ILE n 1 106 LYS n 1 107 GLY n 1 108 GLU n 1 109 ILE n 1 110 ASP n 1 111 ASP n 1 112 VAL n 1 113 ALA n 1 114 ALA n 1 115 SER n 1 116 ALA n 1 117 ALA n 1 118 ARG n 1 119 GLU n 1 120 ILE n 1 121 PHE n 1 122 ASP n 1 123 ASP n 1 124 SER n 1 125 ASP n 1 126 GLU n 1 127 ARG n 1 128 LEU n 1 129 HIS n 1 130 LYS n 1 131 LEU n 1 132 PHE n 1 133 ILE n 1 134 ARG n 1 135 ALA n 1 136 SER n 1 137 GLY n 1 138 ASN n 1 139 GLU n 1 140 LEU n 1 141 ILE n 1 142 ILE n 1 143 SER n 1 144 LEU n 1 145 TYR n 1 146 GLU n 1 147 LYS n 1 148 ILE n 1 149 TRP n 1 150 ASP n 1 151 ARG n 1 152 ILE n 1 153 ASP n 1 154 LEU n 1 155 VAL n 1 156 ARG n 1 157 HIS n 1 158 LEU n 1 159 ASN n 1 160 GLU n 1 161 ARG n 1 162 TYR n 1 163 VAL n 1 164 VAL n 1 165 SER n 1 166 ASN n 1 167 ARG n 1 168 GLU n 1 169 HIS n 1 170 LYS n 1 171 GLU n 1 172 LEU n 1 173 ILE n 1 174 GLU n 1 175 ARG n 1 176 ILE n 1 177 ILE n 1 178 SER n 1 179 GLY n 1 180 ASP n 1 181 LYS n 1 182 GLU n 1 183 GLY n 1 184 ALA n 1 185 ILE n 1 186 GLU n 1 187 LYS n 1 188 LEU n 1 189 LYS n 1 190 GLU n 1 191 HIS n 1 192 LEU n 1 193 LYS n 1 194 ASN n 1 195 VAL n 1 196 GLU n 1 197 ALA n 1 198 GLU n 1 199 THR n 1 200 ILE n 1 201 LYS n 1 202 ASN n 1 203 LEU n 1 204 TYR n 1 205 THR n 1 206 TYR n 1 207 GLU n 1 208 ARG n 1 209 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TM_0439 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'MSB8 / DSM 3109 / JCM 10099' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima MSB8' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9WYS0_THEMA _struct_ref.pdbx_db_accession Q9WYS0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VDLVRTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEKFIRETIET RIMMEVFCLENYFDKIAGSEELLEIKGEIDDVEKSAKREIFDDSDERLHKLFIRASGNELIISLYEKIWDRIDLVRHLNE RYVVSNREHKELIERIISGDKEGAIEKLKEHLKNVEAETIKNLYTYERS ; _struct_ref.pdbx_align_begin 6 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FMS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 209 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9WYS0 _struct_ref_seq.db_align_beg 6 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 214 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 6 _struct_ref_seq.pdbx_auth_seq_align_end 214 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FMS ALA A 113 ? UNP Q9WYS0 GLU 118 'engineered mutation' 118 1 1 3FMS ALA A 114 ? UNP Q9WYS0 LYS 119 'engineered mutation' 119 2 1 3FMS ALA A 117 ? UNP Q9WYS0 LYS 122 'engineered mutation' 122 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3FMS _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.61 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '35% 2-methyl-2,4-pentanediol, 0.1 M Sodium acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 173 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-08-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'KOHZU: Double crystal Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97960 1.0 2 0.95370 1.0 3 0.97980 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_wavelength_list '0.97960, 0.95370, 0.97980' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.1 # _reflns.entry_id 3FMS _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 40.0 _reflns.number_all ? _reflns.number_obs 12695 _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 46.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 88.3 _reflns_shell.Rmerge_I_obs 0.228 _reflns_shell.meanI_over_sigI_obs 5.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3FMS _refine.ls_d_res_high 2.20 _refine.ls_d_res_low 36.163 _refine.pdbx_ls_sigma_F 1.39 _refine.ls_percent_reflns_obs 97.610 _refine.ls_number_reflns_obs 12586 _refine.ls_R_factor_obs 0.161 _refine.ls_R_factor_R_work 0.157 _refine.ls_R_factor_R_free 0.228 _refine.ls_percent_reflns_R_free 4.930 _refine.ls_number_reflns_R_free 620 _refine.B_iso_mean 38.632 _refine.solvent_model_param_bsol 61.545 _refine.solvent_model_param_ksol 0.379 _refine.aniso_B[1][1] -2.729 _refine.aniso_B[2][2] 0.865 _refine.aniso_B[3][3] 1.864 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 3.637 _refine.aniso_B[2][3] -0.000 _refine.overall_SU_ML 0.310 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.B_iso_max 118.97 _refine.B_iso_min 11.03 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_isotropic_thermal_model ? _refine.details 'AUTHORS USED TLS' _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_ion_probe_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1713 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 1803 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 36.163 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 3499 0.017 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 6351 1.310 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 270 0.108 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 515 0.007 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 895 14.195 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.200 2.421 4 91.000 2764 . 0.167 0.277 . 146 . 2910 . . 'X-RAY DIFFRACTION' 2.421 2.772 4 100.000 3037 . 0.150 0.255 . 169 . 3206 . . 'X-RAY DIFFRACTION' 2.772 3.491 4 100.000 3069 . 0.147 0.235 . 149 . 3218 . . 'X-RAY DIFFRACTION' 3.491 36.167 4 100.000 3096 . 0.156 0.205 . 156 . 3252 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3FMS _struct.title 'Crystal structure of TM0439, a GntR transcriptional regulator' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FMS _struct_keywords.text ;GNTR FAMILY, TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS, SURFACE ENTROPY REDUCTION, PSI-2, PROTEIN STRUCTURE INITIATIVE, INTEGRATED CENTER FOR STRUCTURE AND FUNCTION INNOVATION, ISFI, DNA-BINDING, TRANSCRIPTION REGULATION, TRANSCRIPTION REGULATOR, Transcription ; _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 1 ? ASN A 18 ? VAL A 6 ASN A 23 1 ? 18 HELX_P HELX_P2 2 ASN A 28 ? GLY A 37 ? ASN A 33 GLY A 42 1 ? 10 HELX_P HELX_P3 3 SER A 39 ? GLY A 54 ? SER A 44 GLY A 59 1 ? 16 HELX_P HELX_P4 4 ASP A 70 ? TYR A 92 ? ASP A 75 TYR A 97 1 ? 23 HELX_P HELX_P5 5 TYR A 92 ? GLY A 98 ? TYR A 97 GLY A 103 1 ? 7 HELX_P HELX_P6 6 SER A 99 ? ALA A 116 ? SER A 104 ALA A 121 1 ? 18 HELX_P HELX_P7 7 ALA A 117 ? ALA A 135 ? ALA A 122 ALA A 140 1 ? 19 HELX_P HELX_P8 8 ASN A 138 ? ILE A 148 ? ASN A 143 ILE A 153 1 ? 11 HELX_P HELX_P9 9 ILE A 148 ? LEU A 158 ? ILE A 153 LEU A 163 1 ? 11 HELX_P HELX_P10 10 ARG A 161 ? SER A 178 ? ARG A 166 SER A 183 1 ? 18 HELX_P HELX_P11 11 ASP A 180 ? LEU A 203 ? ASP A 185 LEU A 208 1 ? 24 HELX_P HELX_P12 12 TYR A 204 ? TYR A 206 ? TYR A 209 TYR A 211 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 14 C ? ? ? 1_555 A MSE 15 N ? ? A GLU 19 A MSE 20 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale2 covale both ? A MSE 15 C ? ? ? 1_555 A ILE 16 N ? ? A MSE 20 A ILE 21 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale3 covale both ? A ILE 82 C ? ? ? 1_555 A MSE 83 N ? ? A ILE 87 A MSE 88 1_555 ? ? ? ? ? ? ? 1.304 ? ? covale4 covale both ? A MSE 83 C ? ? ? 1_555 A MSE 84 N ? ? A MSE 88 A MSE 89 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale5 covale both ? A MSE 84 C ? ? ? 1_555 A GLU 85 N ? ? A MSE 89 A GLU 90 1_555 ? ? ? ? ? ? ? 1.319 ? ? metalc1 metalc ? ? A HIS 129 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 134 A NI 301 1_555 ? ? ? ? ? ? ? 2.082 ? ? metalc2 metalc ? ? A HIS 169 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 174 A NI 301 1_555 ? ? ? ? ? ? ? 2.122 ? ? metalc3 metalc ? ? A HIS 191 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 196 A NI 301 1_555 ? ? ? ? ? ? ? 2.103 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 56 ? VAL A 59 ? VAL A 61 VAL A 64 A 2 GLY A 63 ? VAL A 66 ? GLY A 68 VAL A 71 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 59 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 64 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id GLY _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 63 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id GLY _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 68 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NI 301 ? 5 'BINDING SITE FOR RESIDUE NI A 301' AC2 Software A ACT 302 ? 8 'BINDING SITE FOR RESIDUE ACT A 302' AC3 Software A ACT 303 ? 2 'BINDING SITE FOR RESIDUE ACT A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 125 ? ASP A 130 . ? 1_555 ? 2 AC1 5 HIS A 129 ? HIS A 134 . ? 1_555 ? 3 AC1 5 HIS A 169 ? HIS A 174 . ? 1_555 ? 4 AC1 5 HIS A 191 ? HIS A 196 . ? 1_555 ? 5 AC1 5 ACT C . ? ACT A 302 . ? 1_555 ? 6 AC2 8 ARG A 81 ? ARG A 86 . ? 1_555 ? 7 AC2 8 ASP A 125 ? ASP A 130 . ? 1_555 ? 8 AC2 8 HIS A 129 ? HIS A 134 . ? 1_555 ? 9 AC2 8 HIS A 191 ? HIS A 196 . ? 1_555 ? 10 AC2 8 VAL A 195 ? VAL A 200 . ? 1_555 ? 11 AC2 8 HOH E . ? HOH A 230 . ? 1_555 ? 12 AC2 8 HOH E . ? HOH A 243 . ? 1_555 ? 13 AC2 8 NI B . ? NI A 301 . ? 1_555 ? 14 AC3 2 PRO A 60 ? PRO A 65 . ? 1_555 ? 15 AC3 2 ARG A 61 ? ARG A 66 . ? 1_555 ? # _atom_sites.entry_id 3FMS _atom_sites.fract_transf_matrix[1][1] 0.011739 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003056 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013944 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023852 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N NI O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 6 6 VAL VAL A . n A 1 2 ASP 2 7 7 ASP ASP A . n A 1 3 LEU 3 8 8 LEU LEU A . n A 1 4 VAL 4 9 9 VAL VAL A . n A 1 5 ARG 5 10 10 ARG ARG A . n A 1 6 THR 6 11 11 THR THR A . n A 1 7 LYS 7 12 12 LYS LYS A . n A 1 8 VAL 8 13 13 VAL VAL A . n A 1 9 TYR 9 14 14 TYR TYR A . n A 1 10 ASN 10 15 15 ASN ASN A . n A 1 11 LEU 11 16 16 LEU LEU A . n A 1 12 LEU 12 17 17 LEU LEU A . n A 1 13 LYS 13 18 18 LYS LYS A . n A 1 14 GLU 14 19 19 GLU GLU A . n A 1 15 MSE 15 20 20 MSE MSE A . n A 1 16 ILE 16 21 21 ILE ILE A . n A 1 17 LEU 17 22 22 LEU LEU A . n A 1 18 ASN 18 23 23 ASN ASN A . n A 1 19 HIS 19 24 24 HIS HIS A . n A 1 20 GLU 20 25 25 GLU GLU A . n A 1 21 LEU 21 26 26 LEU LEU A . n A 1 22 LYS 22 27 27 LYS LYS A . n A 1 23 LEU 23 28 28 LEU LEU A . n A 1 24 GLY 24 29 29 GLY GLY A . n A 1 25 GLU 25 30 30 GLU GLU A . n A 1 26 LYS 26 31 31 LYS LYS A . n A 1 27 LEU 27 32 32 LEU LEU A . n A 1 28 ASN 28 33 33 ASN ASN A . n A 1 29 VAL 29 34 34 VAL VAL A . n A 1 30 ARG 30 35 35 ARG ARG A . n A 1 31 GLU 31 36 36 GLU GLU A . n A 1 32 LEU 32 37 37 LEU LEU A . n A 1 33 SER 33 38 38 SER SER A . n A 1 34 GLU 34 39 39 GLU GLU A . n A 1 35 LYS 35 40 40 LYS LYS A . n A 1 36 LEU 36 41 41 LEU LEU A . n A 1 37 GLY 37 42 42 GLY GLY A . n A 1 38 ILE 38 43 43 ILE ILE A . n A 1 39 SER 39 44 44 SER SER A . n A 1 40 PHE 40 45 45 PHE PHE A . n A 1 41 THR 41 46 46 THR THR A . n A 1 42 PRO 42 47 47 PRO PRO A . n A 1 43 VAL 43 48 48 VAL VAL A . n A 1 44 ARG 44 49 49 ARG ARG A . n A 1 45 ASP 45 50 50 ASP ASP A . n A 1 46 ALA 46 51 51 ALA ALA A . n A 1 47 LEU 47 52 52 LEU LEU A . n A 1 48 LEU 48 53 53 LEU LEU A . n A 1 49 GLN 49 54 54 GLN GLN A . n A 1 50 LEU 50 55 55 LEU LEU A . n A 1 51 ALA 51 56 56 ALA ALA A . n A 1 52 THR 52 57 57 THR THR A . n A 1 53 GLU 53 58 58 GLU GLU A . n A 1 54 GLY 54 59 59 GLY GLY A . n A 1 55 LEU 55 60 60 LEU LEU A . n A 1 56 VAL 56 61 61 VAL VAL A . n A 1 57 LYS 57 62 62 LYS LYS A . n A 1 58 VAL 58 63 63 VAL VAL A . n A 1 59 VAL 59 64 64 VAL VAL A . n A 1 60 PRO 60 65 65 PRO PRO A . n A 1 61 ARG 61 66 66 ARG ARG A . n A 1 62 VAL 62 67 67 VAL VAL A . n A 1 63 GLY 63 68 68 GLY GLY A . n A 1 64 PHE 64 69 69 PHE PHE A . n A 1 65 PHE 65 70 70 PHE PHE A . n A 1 66 VAL 66 71 71 VAL VAL A . n A 1 67 THR 67 72 72 THR THR A . n A 1 68 ASP 68 73 73 ASP ASP A . n A 1 69 VAL 69 74 74 VAL VAL A . n A 1 70 ASP 70 75 75 ASP ASP A . n A 1 71 GLU 71 76 76 GLU GLU A . n A 1 72 LYS 72 77 77 LYS LYS A . n A 1 73 PHE 73 78 78 PHE PHE A . n A 1 74 ILE 74 79 79 ILE ILE A . n A 1 75 ARG 75 80 80 ARG ARG A . n A 1 76 GLU 76 81 81 GLU GLU A . n A 1 77 THR 77 82 82 THR THR A . n A 1 78 ILE 78 83 83 ILE ILE A . n A 1 79 GLU 79 84 84 GLU GLU A . n A 1 80 THR 80 85 85 THR THR A . n A 1 81 ARG 81 86 86 ARG ARG A . n A 1 82 ILE 82 87 87 ILE ILE A . n A 1 83 MSE 83 88 88 MSE MSE A . n A 1 84 MSE 84 89 89 MSE MSE A . n A 1 85 GLU 85 90 90 GLU GLU A . n A 1 86 VAL 86 91 91 VAL VAL A . n A 1 87 PHE 87 92 92 PHE PHE A . n A 1 88 CYS 88 93 93 CYS CYS A . n A 1 89 LEU 89 94 94 LEU LEU A . n A 1 90 GLU 90 95 95 GLU GLU A . n A 1 91 ASN 91 96 96 ASN ASN A . n A 1 92 TYR 92 97 97 TYR TYR A . n A 1 93 PHE 93 98 98 PHE PHE A . n A 1 94 ASP 94 99 99 ASP ASP A . n A 1 95 LYS 95 100 100 LYS LYS A . n A 1 96 ILE 96 101 101 ILE ILE A . n A 1 97 ALA 97 102 102 ALA ALA A . n A 1 98 GLY 98 103 103 GLY GLY A . n A 1 99 SER 99 104 104 SER SER A . n A 1 100 GLU 100 105 105 GLU GLU A . n A 1 101 GLU 101 106 106 GLU GLU A . n A 1 102 LEU 102 107 107 LEU LEU A . n A 1 103 LEU 103 108 108 LEU LEU A . n A 1 104 GLU 104 109 109 GLU GLU A . n A 1 105 ILE 105 110 110 ILE ILE A . n A 1 106 LYS 106 111 111 LYS LYS A . n A 1 107 GLY 107 112 112 GLY GLY A . n A 1 108 GLU 108 113 113 GLU GLU A . n A 1 109 ILE 109 114 114 ILE ILE A . n A 1 110 ASP 110 115 115 ASP ASP A . n A 1 111 ASP 111 116 116 ASP ASP A . n A 1 112 VAL 112 117 117 VAL VAL A . n A 1 113 ALA 113 118 118 ALA ALA A . n A 1 114 ALA 114 119 119 ALA ALA A . n A 1 115 SER 115 120 120 SER SER A . n A 1 116 ALA 116 121 121 ALA ALA A . n A 1 117 ALA 117 122 122 ALA ALA A . n A 1 118 ARG 118 123 123 ARG ARG A . n A 1 119 GLU 119 124 124 GLU GLU A . n A 1 120 ILE 120 125 125 ILE ILE A . n A 1 121 PHE 121 126 126 PHE PHE A . n A 1 122 ASP 122 127 127 ASP ASP A . n A 1 123 ASP 123 128 128 ASP ASP A . n A 1 124 SER 124 129 129 SER SER A . n A 1 125 ASP 125 130 130 ASP ASP A . n A 1 126 GLU 126 131 131 GLU GLU A . n A 1 127 ARG 127 132 132 ARG ARG A . n A 1 128 LEU 128 133 133 LEU LEU A . n A 1 129 HIS 129 134 134 HIS HIS A . n A 1 130 LYS 130 135 135 LYS LYS A . n A 1 131 LEU 131 136 136 LEU LEU A . n A 1 132 PHE 132 137 137 PHE PHE A . n A 1 133 ILE 133 138 138 ILE ILE A . n A 1 134 ARG 134 139 139 ARG ARG A . n A 1 135 ALA 135 140 140 ALA ALA A . n A 1 136 SER 136 141 141 SER SER A . n A 1 137 GLY 137 142 142 GLY GLY A . n A 1 138 ASN 138 143 143 ASN ASN A . n A 1 139 GLU 139 144 144 GLU GLU A . n A 1 140 LEU 140 145 145 LEU LEU A . n A 1 141 ILE 141 146 146 ILE ILE A . n A 1 142 ILE 142 147 147 ILE ILE A . n A 1 143 SER 143 148 148 SER SER A . n A 1 144 LEU 144 149 149 LEU LEU A . n A 1 145 TYR 145 150 150 TYR TYR A . n A 1 146 GLU 146 151 151 GLU GLU A . n A 1 147 LYS 147 152 152 LYS LYS A . n A 1 148 ILE 148 153 153 ILE ILE A . n A 1 149 TRP 149 154 154 TRP TRP A . n A 1 150 ASP 150 155 155 ASP ASP A . n A 1 151 ARG 151 156 156 ARG ARG A . n A 1 152 ILE 152 157 157 ILE ILE A . n A 1 153 ASP 153 158 158 ASP ASP A . n A 1 154 LEU 154 159 159 LEU LEU A . n A 1 155 VAL 155 160 160 VAL VAL A . n A 1 156 ARG 156 161 161 ARG ARG A . n A 1 157 HIS 157 162 162 HIS HIS A . n A 1 158 LEU 158 163 163 LEU LEU A . n A 1 159 ASN 159 164 164 ASN ASN A . n A 1 160 GLU 160 165 165 GLU GLU A . n A 1 161 ARG 161 166 166 ARG ARG A . n A 1 162 TYR 162 167 167 TYR TYR A . n A 1 163 VAL 163 168 168 VAL VAL A . n A 1 164 VAL 164 169 169 VAL VAL A . n A 1 165 SER 165 170 170 SER SER A . n A 1 166 ASN 166 171 171 ASN ASN A . n A 1 167 ARG 167 172 172 ARG ARG A . n A 1 168 GLU 168 173 173 GLU GLU A . n A 1 169 HIS 169 174 174 HIS HIS A . n A 1 170 LYS 170 175 175 LYS LYS A . n A 1 171 GLU 171 176 176 GLU GLU A . n A 1 172 LEU 172 177 177 LEU LEU A . n A 1 173 ILE 173 178 178 ILE ILE A . n A 1 174 GLU 174 179 179 GLU GLU A . n A 1 175 ARG 175 180 180 ARG ARG A . n A 1 176 ILE 176 181 181 ILE ILE A . n A 1 177 ILE 177 182 182 ILE ILE A . n A 1 178 SER 178 183 183 SER SER A . n A 1 179 GLY 179 184 184 GLY GLY A . n A 1 180 ASP 180 185 185 ASP ASP A . n A 1 181 LYS 181 186 186 LYS LYS A . n A 1 182 GLU 182 187 187 GLU GLU A . n A 1 183 GLY 183 188 188 GLY GLY A . n A 1 184 ALA 184 189 189 ALA ALA A . n A 1 185 ILE 185 190 190 ILE ILE A . n A 1 186 GLU 186 191 191 GLU GLU A . n A 1 187 LYS 187 192 192 LYS LYS A . n A 1 188 LEU 188 193 193 LEU LEU A . n A 1 189 LYS 189 194 194 LYS LYS A . n A 1 190 GLU 190 195 195 GLU GLU A . n A 1 191 HIS 191 196 196 HIS HIS A . n A 1 192 LEU 192 197 197 LEU LEU A . n A 1 193 LYS 193 198 198 LYS LYS A . n A 1 194 ASN 194 199 199 ASN ASN A . n A 1 195 VAL 195 200 200 VAL VAL A . n A 1 196 GLU 196 201 201 GLU GLU A . n A 1 197 ALA 197 202 202 ALA ALA A . n A 1 198 GLU 198 203 203 GLU GLU A . n A 1 199 THR 199 204 204 THR THR A . n A 1 200 ILE 200 205 205 ILE ILE A . n A 1 201 LYS 201 206 206 LYS LYS A . n A 1 202 ASN 202 207 207 ASN ASN A . n A 1 203 LEU 203 208 208 LEU LEU A . n A 1 204 TYR 204 209 209 TYR TYR A . n A 1 205 THR 205 210 210 THR THR A . n A 1 206 TYR 206 211 211 TYR TYR A . n A 1 207 GLU 207 212 212 GLU GLU A . n A 1 208 ARG 208 213 213 ARG ARG A . n A 1 209 SER 209 214 214 SER SER A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Integrated Center for Structure and Function Innovation' _pdbx_SG_project.initial_of_center ISFI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 301 301 NI NI A . C 3 ACT 1 302 302 ACT ACT A . D 3 ACT 1 303 303 ACT ACT A . E 4 HOH 1 1 1 HOH HOH A . E 4 HOH 2 2 2 HOH HOH A . E 4 HOH 3 3 3 HOH HOH A . E 4 HOH 4 4 4 HOH HOH A . E 4 HOH 5 5 5 HOH HOH A . E 4 HOH 6 215 6 HOH HOH A . E 4 HOH 7 216 7 HOH HOH A . E 4 HOH 8 217 8 HOH HOH A . E 4 HOH 9 218 9 HOH HOH A . E 4 HOH 10 219 10 HOH HOH A . E 4 HOH 11 220 11 HOH HOH A . E 4 HOH 12 221 12 HOH HOH A . E 4 HOH 13 222 13 HOH HOH A . E 4 HOH 14 223 14 HOH HOH A . E 4 HOH 15 224 15 HOH HOH A . E 4 HOH 16 225 16 HOH HOH A . E 4 HOH 17 226 17 HOH HOH A . E 4 HOH 18 227 18 HOH HOH A . E 4 HOH 19 228 19 HOH HOH A . E 4 HOH 20 229 20 HOH HOH A . E 4 HOH 21 230 21 HOH HOH A . E 4 HOH 22 231 22 HOH HOH A . E 4 HOH 23 232 23 HOH HOH A . E 4 HOH 24 233 24 HOH HOH A . E 4 HOH 25 234 25 HOH HOH A . E 4 HOH 26 235 26 HOH HOH A . E 4 HOH 27 236 27 HOH HOH A . E 4 HOH 28 237 28 HOH HOH A . E 4 HOH 29 238 29 HOH HOH A . E 4 HOH 30 239 30 HOH HOH A . E 4 HOH 31 240 31 HOH HOH A . E 4 HOH 32 241 32 HOH HOH A . E 4 HOH 33 242 33 HOH HOH A . E 4 HOH 34 243 34 HOH HOH A . E 4 HOH 35 244 35 HOH HOH A . E 4 HOH 36 245 36 HOH HOH A . E 4 HOH 37 246 37 HOH HOH A . E 4 HOH 38 247 38 HOH HOH A . E 4 HOH 39 248 39 HOH HOH A . E 4 HOH 40 249 40 HOH HOH A . E 4 HOH 41 250 41 HOH HOH A . E 4 HOH 42 251 42 HOH HOH A . E 4 HOH 43 252 43 HOH HOH A . E 4 HOH 44 253 44 HOH HOH A . E 4 HOH 45 254 45 HOH HOH A . E 4 HOH 46 255 46 HOH HOH A . E 4 HOH 47 256 47 HOH HOH A . E 4 HOH 48 257 48 HOH HOH A . E 4 HOH 49 258 49 HOH HOH A . E 4 HOH 50 259 50 HOH HOH A . E 4 HOH 51 260 51 HOH HOH A . E 4 HOH 52 261 52 HOH HOH A . E 4 HOH 53 262 53 HOH HOH A . E 4 HOH 54 263 54 HOH HOH A . E 4 HOH 55 264 55 HOH HOH A . E 4 HOH 56 265 56 HOH HOH A . E 4 HOH 57 266 57 HOH HOH A . E 4 HOH 58 267 58 HOH HOH A . E 4 HOH 59 268 59 HOH HOH A . E 4 HOH 60 269 60 HOH HOH A . E 4 HOH 61 270 61 HOH HOH A . E 4 HOH 62 271 62 HOH HOH A . E 4 HOH 63 272 63 HOH HOH A . E 4 HOH 64 273 64 HOH HOH A . E 4 HOH 65 274 65 HOH HOH A . E 4 HOH 66 275 66 HOH HOH A . E 4 HOH 67 276 67 HOH HOH A . E 4 HOH 68 277 68 HOH HOH A . E 4 HOH 69 278 69 HOH HOH A . E 4 HOH 70 279 70 HOH HOH A . E 4 HOH 71 280 71 HOH HOH A . E 4 HOH 72 281 72 HOH HOH A . E 4 HOH 73 282 73 HOH HOH A . E 4 HOH 74 283 74 HOH HOH A . E 4 HOH 75 284 75 HOH HOH A . E 4 HOH 76 285 76 HOH HOH A . E 4 HOH 77 286 77 HOH HOH A . E 4 HOH 78 287 78 HOH HOH A . E 4 HOH 79 288 79 HOH HOH A . E 4 HOH 80 289 80 HOH HOH A . E 4 HOH 81 290 81 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 15 A MSE 20 ? MET SELENOMETHIONINE 2 A MSE 83 A MSE 88 ? MET SELENOMETHIONINE 3 A MSE 84 A MSE 89 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1920 ? 1 MORE -11.4 ? 1 'SSA (A^2)' 18900 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 229 ? E HOH . 2 1 A HOH 281 ? E HOH . 3 1 A HOH 284 ? E HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 129 ? A HIS 134 ? 1_555 NI ? B NI . ? A NI 301 ? 1_555 NE2 ? A HIS 169 ? A HIS 174 ? 1_555 114.2 ? 2 NE2 ? A HIS 129 ? A HIS 134 ? 1_555 NI ? B NI . ? A NI 301 ? 1_555 NE2 ? A HIS 191 ? A HIS 196 ? 1_555 104.6 ? 3 NE2 ? A HIS 169 ? A HIS 174 ? 1_555 NI ? B NI . ? A NI 301 ? 1_555 NE2 ? A HIS 191 ? A HIS 196 ? 1_555 92.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-04-09 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2018-01-24 6 'Structure model' 1 5 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Structure summary' 5 6 'Structure model' 'Database references' 6 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' audit_author 3 6 'Structure model' database_2 4 6 'Structure model' struct_conn 5 6 'Structure model' struct_ref_seq_dif 6 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_audit_author.name' 2 6 'Structure model' '_database_2.pdbx_DOI' 3 6 'Structure model' '_database_2.pdbx_database_accession' 4 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 6 'Structure model' '_struct_ref_seq_dif.details' 6 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.400 _diffrn_reflns.pdbx_d_res_low 40.000 _diffrn_reflns.pdbx_number_obs 9724 _diffrn_reflns.pdbx_Rmerge_I_obs 0.059 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.63 _diffrn_reflns.av_sigmaI_over_netI ? _diffrn_reflns.pdbx_redundancy 7.00 _diffrn_reflns.pdbx_percent_possible_obs 98.50 _diffrn_reflns.number 68034 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.17 40.00 ? ? 0.039 ? 2.149 7.50 99.90 1 4.10 5.17 ? ? 0.039 ? 1.832 7.30 99.90 1 3.58 4.10 ? ? 0.060 ? 2.643 7.30 100.00 1 3.26 3.58 ? ? 0.072 ? 2.287 7.40 99.90 1 3.02 3.26 ? ? 0.087 ? 1.617 7.50 99.90 1 2.85 3.02 ? ? 0.104 ? 1.313 7.50 100.00 1 2.70 2.85 ? ? 0.140 ? 1.060 7.30 100.00 1 2.59 2.70 ? ? 0.185 ? 0.996 6.80 99.60 1 2.49 2.59 ? ? 0.208 ? 0.942 6.00 97.00 1 2.40 2.49 ? ? 0.219 ? 0.911 5.10 88.70 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 10.2423 _pdbx_refine_tls.origin_y 44.5731 _pdbx_refine_tls.origin_z 10.2735 _pdbx_refine_tls.T[1][1] 0.2202 _pdbx_refine_tls.T[2][2] 0.2641 _pdbx_refine_tls.T[3][3] 0.2348 _pdbx_refine_tls.T[1][2] -0.0018 _pdbx_refine_tls.T[1][3] -0.0112 _pdbx_refine_tls.T[2][3] 0.0140 _pdbx_refine_tls.L[1][1] 0.6846 _pdbx_refine_tls.L[2][2] 1.2730 _pdbx_refine_tls.L[3][3] 0.8469 _pdbx_refine_tls.L[1][2] -0.5198 _pdbx_refine_tls.L[1][3] -0.1357 _pdbx_refine_tls.L[2][3] -0.0437 _pdbx_refine_tls.S[1][1] -0.0519 _pdbx_refine_tls.S[2][2] -0.0118 _pdbx_refine_tls.S[3][3] 0.0581 _pdbx_refine_tls.S[1][2] -0.1237 _pdbx_refine_tls.S[1][3] -0.0735 _pdbx_refine_tls.S[2][3] -0.0123 _pdbx_refine_tls.S[2][1] 0.1136 _pdbx_refine_tls.S[3][1] 0.0659 _pdbx_refine_tls.S[3][2] 0.0181 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 58 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OE1 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 58 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.335 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation 0.083 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LEU 8 ? ? CG A LEU 8 ? ? CD1 A LEU 8 ? ? 121.74 111.00 10.74 1.70 N 2 1 OE1 A GLU 58 ? ? CD A GLU 58 ? ? OE2 A GLU 58 ? ? 131.52 123.30 8.22 1.20 N 3 1 NE A ARG 161 ? ? CZ A ARG 161 ? ? NH1 A ARG 161 ? ? 124.32 120.30 4.02 0.50 N 4 1 NE A ARG 166 ? ? CZ A ARG 166 ? ? NH1 A ARG 166 ? ? 124.29 120.30 3.99 0.50 N 5 1 NE A ARG 166 ? ? CZ A ARG 166 ? ? NH2 A ARG 166 ? ? 116.28 120.30 -4.02 0.50 N 6 1 NE A ARG 172 ? ? CZ A ARG 172 ? ? NH1 A ARG 172 ? ? 124.24 120.30 3.94 0.50 N 7 1 NE A ARG 172 ? ? CZ A ARG 172 ? ? NH2 A ARG 172 ? ? 116.85 120.30 -3.45 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 44 ? ? -44.65 160.17 2 1 ARG A 166 ? ? -101.84 50.15 3 1 ARG A 213 ? ? 86.48 -160.19 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 'ACETATE ION' ACT 4 water HOH #