data_3FN2 # _entry.id 3FN2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3FN2 RCSB RCSB050792 WWPDB D_1000050792 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC21265.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3FN2 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-12-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Tesar, C.' 2 'Freeman, L.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The structure of a putative sensor histidine kinase domain from Clostridium symbiosum ATCC 14940' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cuff, M.E.' 1 primary 'Tesar, C.' 2 primary 'Freeman, L.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 107.252 _cell.length_b 107.252 _cell.length_c 49.710 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3FN2 _cell.pdbx_unique_axis ? _cell.Z_PDB 18 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'H 3' _symmetry.entry_id 3FN2 _symmetry.Int_Tables_number 146 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative sensor histidine kinase domain' 12709.665 2 ? ? 'Residues 41-143' ? 2 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 5 water nat water 18.015 154 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNANGYT(MSE)QRDNQKTLAVY(MSE)FEEINRDVEYLSGRLSEKELKDKYRYYGRGYVRITDKDGQVITYEDGSVQDK TVFLTNEGANKLGWKLEFLIDEK(MSE)FEEEILEKQN ; _entity_poly.pdbx_seq_one_letter_code_can ;SNANGYTMQRDNQKTLAVYMFEEINRDVEYLSGRLSEKELKDKYRYYGRGYVRITDKDGQVITYEDGSVQDKTVFLTNEG ANKLGWKLEFLIDEKMFEEEILEKQN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC21265.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 ASN n 1 5 GLY n 1 6 TYR n 1 7 THR n 1 8 MSE n 1 9 GLN n 1 10 ARG n 1 11 ASP n 1 12 ASN n 1 13 GLN n 1 14 LYS n 1 15 THR n 1 16 LEU n 1 17 ALA n 1 18 VAL n 1 19 TYR n 1 20 MSE n 1 21 PHE n 1 22 GLU n 1 23 GLU n 1 24 ILE n 1 25 ASN n 1 26 ARG n 1 27 ASP n 1 28 VAL n 1 29 GLU n 1 30 TYR n 1 31 LEU n 1 32 SER n 1 33 GLY n 1 34 ARG n 1 35 LEU n 1 36 SER n 1 37 GLU n 1 38 LYS n 1 39 GLU n 1 40 LEU n 1 41 LYS n 1 42 ASP n 1 43 LYS n 1 44 TYR n 1 45 ARG n 1 46 TYR n 1 47 TYR n 1 48 GLY n 1 49 ARG n 1 50 GLY n 1 51 TYR n 1 52 VAL n 1 53 ARG n 1 54 ILE n 1 55 THR n 1 56 ASP n 1 57 LYS n 1 58 ASP n 1 59 GLY n 1 60 GLN n 1 61 VAL n 1 62 ILE n 1 63 THR n 1 64 TYR n 1 65 GLU n 1 66 ASP n 1 67 GLY n 1 68 SER n 1 69 VAL n 1 70 GLN n 1 71 ASP n 1 72 LYS n 1 73 THR n 1 74 VAL n 1 75 PHE n 1 76 LEU n 1 77 THR n 1 78 ASN n 1 79 GLU n 1 80 GLY n 1 81 ALA n 1 82 ASN n 1 83 LYS n 1 84 LEU n 1 85 GLY n 1 86 TRP n 1 87 LYS n 1 88 LEU n 1 89 GLU n 1 90 PHE n 1 91 LEU n 1 92 ILE n 1 93 ASP n 1 94 GLU n 1 95 LYS n 1 96 MSE n 1 97 PHE n 1 98 GLU n 1 99 GLU n 1 100 GLU n 1 101 ILE n 1 102 LEU n 1 103 GLU n 1 104 LYS n 1 105 GLN n 1 106 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridium symbiosum ATCC 14940' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411472 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 14940 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3FN2 _struct_ref.pdbx_db_accession 3FN2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NGYTMQRDNQKTLAVYMFEEINRDVEYLSGRLSEKELKDKYRYYGRGYVRITDKDGQVITYEDGSVQDKTVFLTNEGANK LGWKLEFLIDEKMFEEEILEKQN ; _struct_ref.pdbx_align_begin 41 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FN2 A 1 ? 106 ? 3FN2 38 ? 143 ? 38 143 2 1 3FN2 B 1 ? 106 ? 3FN2 38 ? 143 ? 38 143 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FN2 SER A 1 ? PDB 3FN2 ? ? 'EXPRESSION TAG' 38 1 1 3FN2 ASN A 2 ? PDB 3FN2 ? ? 'EXPRESSION TAG' 39 2 1 3FN2 ALA A 3 ? PDB 3FN2 ? ? 'EXPRESSION TAG' 40 3 2 3FN2 SER B 1 ? PDB 3FN2 ? ? 'EXPRESSION TAG' 38 4 2 3FN2 ASN B 2 ? PDB 3FN2 ? ? 'EXPRESSION TAG' 39 5 2 3FN2 ALA B 3 ? PDB 3FN2 ? ? 'EXPRESSION TAG' 40 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3FN2 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M Acetate pH 4.5, 0.8M NaH2PO4, 1.4M K2HPO3, VAPOR DIFFUSION, SITTING DROP, temperature 296K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 2008-10-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97945 1.0 2 0.97921 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97945, 0.97921' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM # _reflns.entry_id 3FN2 _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 50.0 _reflns.number_obs 16144 _reflns.pdbx_Rmerge_I_obs 0.091 _reflns.pdbx_netI_over_sigmaI 30.418 _reflns.pdbx_chi_squared 2.370 _reflns.pdbx_redundancy 5.600 _reflns.percent_possible_obs 95.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all 16144 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.486 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.711 _reflns_shell.pdbx_redundancy 4.50 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 626 _reflns_shell.percent_possible_all 73.60 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3FN2 _refine.ls_d_res_high 1.90 _refine.ls_d_res_low 50.0 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 95.710 _refine.ls_number_reflns_obs 16072 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details '1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. U VALUES: RESIDUAL ONLY' _refine.ls_R_factor_obs 0.190 _refine.ls_R_factor_R_work 0.187 _refine.ls_R_factor_R_free 0.251 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 812 _refine.B_iso_mean 33.198 _refine.aniso_B[1][1] -2.410 _refine.aniso_B[2][2] -2.410 _refine.aniso_B[3][3] 3.620 _refine.aniso_B[1][2] -1.210 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.pdbx_overall_ESU_R 0.175 _refine.pdbx_overall_ESU_R_Free 0.170 _refine.overall_SU_ML 0.118 _refine.overall_SU_B 8.653 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.B_iso_max 139.70 _refine.B_iso_min 13.30 _refine.occupancy_max 1.00 _refine.occupancy_min 0.33 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 16072 _refine.ls_R_factor_all 0.190 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1622 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 154 _refine_hist.number_atoms_total 1786 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1700 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1190 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2283 1.475 1.973 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2887 0.851 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 202 5.040 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 93 43.310 24.624 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 334 16.338 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12 25.062 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 237 0.083 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1891 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 363 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 981 0.925 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 409 0.239 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1581 1.687 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 719 2.746 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 701 4.398 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 75.360 _refine_ls_shell.number_reflns_R_work 883 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.245 _refine_ls_shell.R_factor_R_free 0.308 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 936 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FN2 _struct.title 'Crystal structure of a putative sensor histidine kinase domain from Clostridium symbiosum ATCC 14940' _struct.pdbx_descriptor 'Putative sensor histidine kinase domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FN2 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;gut microbiome, sensor histidine kinase, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 7 ? SER A 32 ? THR A 44 SER A 69 1 ? 26 HELX_P HELX_P2 2 SER A 36 ? ARG A 45 ? SER A 73 ARG A 82 1 ? 10 HELX_P HELX_P3 3 GLU A 94 ? LEU A 102 ? GLU A 131 LEU A 139 1 ? 9 HELX_P HELX_P4 4 THR B 7 ? SER B 32 ? THR B 44 SER B 69 1 ? 26 HELX_P HELX_P5 5 SER B 36 ? ARG B 45 ? SER B 73 ARG B 82 1 ? 10 HELX_P HELX_P6 6 ASP B 66 ? GLN B 70 ? ASP B 103 GLN B 107 5 ? 5 HELX_P HELX_P7 7 GLU B 94 ? LEU B 102 ? GLU B 131 LEU B 139 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A THR 7 C ? ? ? 1_555 A MSE 8 N ? ? A THR 44 A MSE 45 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 8 C ? ? ? 1_555 A GLN 9 N ? ? A MSE 45 A GLN 46 1_555 ? ? ? ? ? ? ? 1.341 ? covale3 covale ? ? A TYR 19 C ? ? ? 1_555 A MSE 20 N A ? A TYR 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale ? ? A TYR 19 C ? ? ? 1_555 A MSE 20 N B ? A TYR 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.337 ? covale5 covale ? ? A MSE 20 C A ? ? 1_555 A PHE 21 N ? ? A MSE 57 A PHE 58 1_555 ? ? ? ? ? ? ? 1.335 ? covale6 covale ? ? A MSE 20 C B ? ? 1_555 A PHE 21 N ? ? A MSE 57 A PHE 58 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? A LYS 95 C ? ? ? 1_555 A MSE 96 N ? ? A LYS 132 A MSE 133 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale ? ? A MSE 96 C ? ? ? 1_555 A PHE 97 N ? ? A MSE 133 A PHE 134 1_555 ? ? ? ? ? ? ? 1.337 ? covale9 covale ? ? B THR 7 C ? ? ? 1_555 B MSE 8 N ? ? B THR 44 B MSE 45 1_555 ? ? ? ? ? ? ? 1.331 ? covale10 covale ? ? B MSE 8 C ? ? ? 1_555 B GLN 9 N ? ? B MSE 45 B GLN 46 1_555 ? ? ? ? ? ? ? 1.338 ? covale11 covale ? ? B TYR 19 C ? ? ? 1_555 B MSE 20 N A ? B TYR 56 B MSE 57 1_555 ? ? ? ? ? ? ? 1.339 ? covale12 covale ? ? B TYR 19 C ? ? ? 1_555 B MSE 20 N B ? B TYR 56 B MSE 57 1_555 ? ? ? ? ? ? ? 1.329 ? covale13 covale ? ? B MSE 20 C A ? ? 1_555 B PHE 21 N ? ? B MSE 57 B PHE 58 1_555 ? ? ? ? ? ? ? 1.329 ? covale14 covale ? ? B MSE 20 C B ? ? 1_555 B PHE 21 N ? ? B MSE 57 B PHE 58 1_555 ? ? ? ? ? ? ? 1.329 ? covale15 covale ? ? B LYS 95 C ? ? ? 1_555 B MSE 96 N ? ? B LYS 132 B MSE 133 1_555 ? ? ? ? ? ? ? 1.330 ? covale16 covale ? ? B MSE 96 C ? ? ? 1_555 B PHE 97 N ? ? B MSE 133 B PHE 134 1_555 ? ? ? ? ? ? ? 1.336 ? metalc1 metalc ? ? A GLY 48 O ? ? ? 1_555 C K . K ? ? A GLY 85 A K 201 1_555 ? ? ? ? ? ? ? 2.757 ? metalc2 metalc ? ? A GLY 50 O ? ? ? 1_555 C K . K ? ? A GLY 87 A K 201 1_555 ? ? ? ? ? ? ? 2.727 ? metalc3 metalc ? ? B GLY 48 O ? ? ? 1_555 C K . K ? ? B GLY 85 A K 201 1_555 ? ? ? ? ? ? ? 2.705 ? metalc4 metalc ? ? B GLY 50 O ? ? ? 1_555 C K . K ? ? B GLY 87 A K 201 1_555 ? ? ? ? ? ? ? 2.625 ? metalc5 metalc ? ? C K . K ? ? ? 1_555 G HOH . O ? ? A K 201 B HOH 166 1_555 ? ? ? ? ? ? ? 2.506 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 51 ? THR A 55 ? TYR A 88 THR A 92 A 2 LYS A 87 ? ASP A 93 ? LYS A 124 ASP A 130 A 3 LYS A 72 ? ASN A 78 ? LYS A 109 ASN A 115 B 1 TYR B 51 ? THR B 55 ? TYR B 88 THR B 92 B 2 LYS B 87 ? ASP B 93 ? LYS B 124 ASP B 130 B 3 LYS B 72 ? ASN B 78 ? LYS B 109 ASN B 115 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 55 ? N THR A 92 O LYS A 87 ? O LYS A 124 A 2 3 O LEU A 88 ? O LEU A 125 N ASN A 78 ? N ASN A 115 B 1 2 N TYR B 51 ? N TYR B 88 O LEU B 91 ? O LEU B 128 B 2 3 O PHE B 90 ? O PHE B 127 N LEU B 76 ? N LEU B 113 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE K A 201' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE PO4 B 202' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO B 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLY A 48 ? GLY A 85 . ? 1_555 ? 2 AC1 5 GLY A 50 ? GLY A 87 . ? 1_555 ? 3 AC1 5 GLY B 48 ? GLY B 85 . ? 1_555 ? 4 AC1 5 GLY B 50 ? GLY B 87 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH B 166 . ? 1_555 ? 6 AC2 8 HOH G . ? HOH B 13 . ? 1_555 ? 7 AC2 8 ARG B 53 ? ARG B 90 . ? 1_555 ? 8 AC2 8 VAL B 69 ? VAL B 106 . ? 1_555 ? 9 AC2 8 LYS B 72 ? LYS B 109 . ? 1_555 ? 10 AC2 8 THR B 73 ? THR B 110 . ? 1_555 ? 11 AC2 8 VAL B 74 ? VAL B 111 . ? 1_555 ? 12 AC2 8 LEU B 91 ? LEU B 128 . ? 1_555 ? 13 AC2 8 EDO E . ? EDO B 203 . ? 1_555 ? 14 AC3 6 GLY A 67 ? GLY A 104 . ? 8_544 ? 15 AC3 6 GLN B 70 ? GLN B 107 . ? 1_555 ? 16 AC3 6 LYS B 72 ? LYS B 109 . ? 1_555 ? 17 AC3 6 THR B 73 ? THR B 110 . ? 1_555 ? 18 AC3 6 HOH G . ? HOH B 147 . ? 1_555 ? 19 AC3 6 PO4 D . ? PO4 B 202 . ? 1_555 ? # _atom_sites.entry_id 3FN2 _atom_sites.fract_transf_matrix[1][1] 0.009324 _atom_sites.fract_transf_matrix[1][2] 0.005383 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010766 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020117 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 38 ? ? ? A . n A 1 2 ASN 2 39 ? ? ? A . n A 1 3 ALA 3 40 ? ? ? A . n A 1 4 ASN 4 41 ? ? ? A . n A 1 5 GLY 5 42 ? ? ? A . n A 1 6 TYR 6 43 43 TYR TYR A . n A 1 7 THR 7 44 44 THR THR A . n A 1 8 MSE 8 45 45 MSE MSE A . n A 1 9 GLN 9 46 46 GLN GLN A . n A 1 10 ARG 10 47 47 ARG ARG A . n A 1 11 ASP 11 48 48 ASP ASP A . n A 1 12 ASN 12 49 49 ASN ASN A . n A 1 13 GLN 13 50 50 GLN GLN A . n A 1 14 LYS 14 51 51 LYS LYS A . n A 1 15 THR 15 52 52 THR THR A . n A 1 16 LEU 16 53 53 LEU LEU A . n A 1 17 ALA 17 54 54 ALA ALA A . n A 1 18 VAL 18 55 55 VAL VAL A . n A 1 19 TYR 19 56 56 TYR TYR A . n A 1 20 MSE 20 57 57 MSE MSE A . n A 1 21 PHE 21 58 58 PHE PHE A . n A 1 22 GLU 22 59 59 GLU GLU A . n A 1 23 GLU 23 60 60 GLU GLU A . n A 1 24 ILE 24 61 61 ILE ILE A . n A 1 25 ASN 25 62 62 ASN ASN A . n A 1 26 ARG 26 63 63 ARG ARG A . n A 1 27 ASP 27 64 64 ASP ASP A . n A 1 28 VAL 28 65 65 VAL VAL A . n A 1 29 GLU 29 66 66 GLU GLU A . n A 1 30 TYR 30 67 67 TYR TYR A . n A 1 31 LEU 31 68 68 LEU LEU A . n A 1 32 SER 32 69 69 SER SER A . n A 1 33 GLY 33 70 70 GLY GLY A . n A 1 34 ARG 34 71 71 ARG ARG A . n A 1 35 LEU 35 72 72 LEU LEU A . n A 1 36 SER 36 73 73 SER SER A . n A 1 37 GLU 37 74 74 GLU GLU A . n A 1 38 LYS 38 75 75 LYS LYS A . n A 1 39 GLU 39 76 76 GLU GLU A . n A 1 40 LEU 40 77 77 LEU LEU A . n A 1 41 LYS 41 78 78 LYS LYS A . n A 1 42 ASP 42 79 79 ASP ASP A . n A 1 43 LYS 43 80 80 LYS LYS A . n A 1 44 TYR 44 81 81 TYR TYR A . n A 1 45 ARG 45 82 82 ARG ARG A . n A 1 46 TYR 46 83 83 TYR TYR A . n A 1 47 TYR 47 84 84 TYR TYR A . n A 1 48 GLY 48 85 85 GLY GLY A . n A 1 49 ARG 49 86 86 ARG ARG A . n A 1 50 GLY 50 87 87 GLY GLY A . n A 1 51 TYR 51 88 88 TYR TYR A . n A 1 52 VAL 52 89 89 VAL VAL A . n A 1 53 ARG 53 90 90 ARG ARG A . n A 1 54 ILE 54 91 91 ILE ILE A . n A 1 55 THR 55 92 92 THR THR A . n A 1 56 ASP 56 93 93 ASP ASP A . n A 1 57 LYS 57 94 94 LYS LYS A . n A 1 58 ASP 58 95 95 ASP ASP A . n A 1 59 GLY 59 96 96 GLY GLY A . n A 1 60 GLN 60 97 97 GLN GLN A . n A 1 61 VAL 61 98 98 VAL VAL A . n A 1 62 ILE 62 99 99 ILE ILE A . n A 1 63 THR 63 100 100 THR THR A . n A 1 64 TYR 64 101 101 TYR TYR A . n A 1 65 GLU 65 102 102 GLU GLU A . n A 1 66 ASP 66 103 103 ASP ASP A . n A 1 67 GLY 67 104 104 GLY GLY A . n A 1 68 SER 68 105 105 SER SER A . n A 1 69 VAL 69 106 106 VAL VAL A . n A 1 70 GLN 70 107 107 GLN GLN A . n A 1 71 ASP 71 108 108 ASP ASP A . n A 1 72 LYS 72 109 109 LYS LYS A . n A 1 73 THR 73 110 110 THR THR A . n A 1 74 VAL 74 111 111 VAL VAL A . n A 1 75 PHE 75 112 112 PHE PHE A . n A 1 76 LEU 76 113 113 LEU LEU A . n A 1 77 THR 77 114 114 THR THR A . n A 1 78 ASN 78 115 115 ASN ASN A . n A 1 79 GLU 79 116 116 GLU GLU A . n A 1 80 GLY 80 117 117 GLY GLY A . n A 1 81 ALA 81 118 118 ALA ALA A . n A 1 82 ASN 82 119 119 ASN ASN A . n A 1 83 LYS 83 120 120 LYS LYS A . n A 1 84 LEU 84 121 121 LEU LEU A . n A 1 85 GLY 85 122 122 GLY GLY A . n A 1 86 TRP 86 123 123 TRP TRP A . n A 1 87 LYS 87 124 124 LYS LYS A . n A 1 88 LEU 88 125 125 LEU LEU A . n A 1 89 GLU 89 126 126 GLU GLU A . n A 1 90 PHE 90 127 127 PHE PHE A . n A 1 91 LEU 91 128 128 LEU LEU A . n A 1 92 ILE 92 129 129 ILE ILE A . n A 1 93 ASP 93 130 130 ASP ASP A . n A 1 94 GLU 94 131 131 GLU GLU A . n A 1 95 LYS 95 132 132 LYS LYS A . n A 1 96 MSE 96 133 133 MSE MSE A . n A 1 97 PHE 97 134 134 PHE PHE A . n A 1 98 GLU 98 135 135 GLU GLU A . n A 1 99 GLU 99 136 136 GLU GLU A . n A 1 100 GLU 100 137 137 GLU GLU A . n A 1 101 ILE 101 138 138 ILE ILE A . n A 1 102 LEU 102 139 139 LEU LEU A . n A 1 103 GLU 103 140 ? ? ? A . n A 1 104 LYS 104 141 ? ? ? A . n A 1 105 GLN 105 142 ? ? ? A . n A 1 106 ASN 106 143 ? ? ? A . n B 1 1 SER 1 38 ? ? ? B . n B 1 2 ASN 2 39 ? ? ? B . n B 1 3 ALA 3 40 ? ? ? B . n B 1 4 ASN 4 41 ? ? ? B . n B 1 5 GLY 5 42 ? ? ? B . n B 1 6 TYR 6 43 43 TYR TYR B . n B 1 7 THR 7 44 44 THR THR B . n B 1 8 MSE 8 45 45 MSE MSE B . n B 1 9 GLN 9 46 46 GLN GLN B . n B 1 10 ARG 10 47 47 ARG ARG B . n B 1 11 ASP 11 48 48 ASP ASP B . n B 1 12 ASN 12 49 49 ASN ASN B . n B 1 13 GLN 13 50 50 GLN GLN B . n B 1 14 LYS 14 51 51 LYS LYS B . n B 1 15 THR 15 52 52 THR THR B . n B 1 16 LEU 16 53 53 LEU LEU B . n B 1 17 ALA 17 54 54 ALA ALA B . n B 1 18 VAL 18 55 55 VAL VAL B . n B 1 19 TYR 19 56 56 TYR TYR B . n B 1 20 MSE 20 57 57 MSE MSE B . n B 1 21 PHE 21 58 58 PHE PHE B . n B 1 22 GLU 22 59 59 GLU GLU B . n B 1 23 GLU 23 60 60 GLU GLU B . n B 1 24 ILE 24 61 61 ILE ILE B . n B 1 25 ASN 25 62 62 ASN ASN B . n B 1 26 ARG 26 63 63 ARG ARG B . n B 1 27 ASP 27 64 64 ASP ASP B . n B 1 28 VAL 28 65 65 VAL VAL B . n B 1 29 GLU 29 66 66 GLU GLU B . n B 1 30 TYR 30 67 67 TYR TYR B . n B 1 31 LEU 31 68 68 LEU LEU B . n B 1 32 SER 32 69 69 SER SER B . n B 1 33 GLY 33 70 70 GLY GLY B . n B 1 34 ARG 34 71 71 ARG ARG B . n B 1 35 LEU 35 72 72 LEU LEU B . n B 1 36 SER 36 73 73 SER SER B . n B 1 37 GLU 37 74 74 GLU GLU B . n B 1 38 LYS 38 75 75 LYS LYS B . n B 1 39 GLU 39 76 76 GLU GLU B . n B 1 40 LEU 40 77 77 LEU LEU B . n B 1 41 LYS 41 78 78 LYS LYS B . n B 1 42 ASP 42 79 79 ASP ASP B . n B 1 43 LYS 43 80 80 LYS LYS B . n B 1 44 TYR 44 81 81 TYR TYR B . n B 1 45 ARG 45 82 82 ARG ARG B . n B 1 46 TYR 46 83 83 TYR TYR B . n B 1 47 TYR 47 84 84 TYR TYR B . n B 1 48 GLY 48 85 85 GLY GLY B . n B 1 49 ARG 49 86 86 ARG ARG B . n B 1 50 GLY 50 87 87 GLY GLY B . n B 1 51 TYR 51 88 88 TYR TYR B . n B 1 52 VAL 52 89 89 VAL VAL B . n B 1 53 ARG 53 90 90 ARG ARG B . n B 1 54 ILE 54 91 91 ILE ILE B . n B 1 55 THR 55 92 92 THR THR B . n B 1 56 ASP 56 93 93 ASP ASP B . n B 1 57 LYS 57 94 94 LYS LYS B . n B 1 58 ASP 58 95 95 ASP ASP B . n B 1 59 GLY 59 96 96 GLY GLY B . n B 1 60 GLN 60 97 97 GLN GLN B . n B 1 61 VAL 61 98 98 VAL VAL B . n B 1 62 ILE 62 99 99 ILE ILE B . n B 1 63 THR 63 100 100 THR THR B . n B 1 64 TYR 64 101 101 TYR TYR B . n B 1 65 GLU 65 102 102 GLU GLU B . n B 1 66 ASP 66 103 103 ASP ASP B . n B 1 67 GLY 67 104 104 GLY GLY B . n B 1 68 SER 68 105 105 SER SER B . n B 1 69 VAL 69 106 106 VAL VAL B . n B 1 70 GLN 70 107 107 GLN GLN B . n B 1 71 ASP 71 108 108 ASP ASP B . n B 1 72 LYS 72 109 109 LYS LYS B . n B 1 73 THR 73 110 110 THR THR B . n B 1 74 VAL 74 111 111 VAL VAL B . n B 1 75 PHE 75 112 112 PHE PHE B . n B 1 76 LEU 76 113 113 LEU LEU B . n B 1 77 THR 77 114 114 THR THR B . n B 1 78 ASN 78 115 115 ASN ASN B . n B 1 79 GLU 79 116 116 GLU GLU B . n B 1 80 GLY 80 117 117 GLY GLY B . n B 1 81 ALA 81 118 118 ALA ALA B . n B 1 82 ASN 82 119 119 ASN ASN B . n B 1 83 LYS 83 120 120 LYS LYS B . n B 1 84 LEU 84 121 121 LEU LEU B . n B 1 85 GLY 85 122 122 GLY GLY B . n B 1 86 TRP 86 123 123 TRP TRP B . n B 1 87 LYS 87 124 124 LYS LYS B . n B 1 88 LEU 88 125 125 LEU LEU B . n B 1 89 GLU 89 126 126 GLU GLU B . n B 1 90 PHE 90 127 127 PHE PHE B . n B 1 91 LEU 91 128 128 LEU LEU B . n B 1 92 ILE 92 129 129 ILE ILE B . n B 1 93 ASP 93 130 130 ASP ASP B . n B 1 94 GLU 94 131 131 GLU GLU B . n B 1 95 LYS 95 132 132 LYS LYS B . n B 1 96 MSE 96 133 133 MSE MSE B . n B 1 97 PHE 97 134 134 PHE PHE B . n B 1 98 GLU 98 135 135 GLU GLU B . n B 1 99 GLU 99 136 136 GLU GLU B . n B 1 100 GLU 100 137 137 GLU GLU B . n B 1 101 ILE 101 138 138 ILE ILE B . n B 1 102 LEU 102 139 139 LEU LEU B . n B 1 103 GLU 103 140 ? ? ? B . n B 1 104 LYS 104 141 ? ? ? B . n B 1 105 GLN 105 142 ? ? ? B . n B 1 106 ASN 106 143 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 201 201 K K A . D 3 PO4 1 202 202 PO4 PO4 B . E 4 EDO 1 203 203 EDO EDO B . F 5 HOH 1 1 1 HOH HOH A . F 5 HOH 2 2 2 HOH HOH A . F 5 HOH 3 5 5 HOH HOH A . F 5 HOH 4 7 7 HOH HOH A . F 5 HOH 5 8 8 HOH HOH A . F 5 HOH 6 9 9 HOH HOH A . F 5 HOH 7 11 11 HOH HOH A . F 5 HOH 8 14 14 HOH HOH A . F 5 HOH 9 16 16 HOH HOH A . F 5 HOH 10 17 17 HOH HOH A . F 5 HOH 11 20 20 HOH HOH A . F 5 HOH 12 22 22 HOH HOH A . F 5 HOH 13 23 23 HOH HOH A . F 5 HOH 14 24 24 HOH HOH A . F 5 HOH 15 29 29 HOH HOH A . F 5 HOH 16 31 31 HOH HOH A . F 5 HOH 17 32 32 HOH HOH A . F 5 HOH 18 33 33 HOH HOH A . F 5 HOH 19 34 34 HOH HOH A . F 5 HOH 20 35 35 HOH HOH A . F 5 HOH 21 36 36 HOH HOH A . F 5 HOH 22 37 37 HOH HOH A . F 5 HOH 23 144 144 HOH HOH A . F 5 HOH 24 145 39 HOH HOH A . F 5 HOH 25 146 146 HOH HOH A . F 5 HOH 26 147 42 HOH HOH A . F 5 HOH 27 148 43 HOH HOH A . F 5 HOH 28 149 90 HOH HOH A . F 5 HOH 29 150 150 HOH HOH A . F 5 HOH 30 151 151 HOH HOH A . F 5 HOH 31 154 154 HOH HOH A . F 5 HOH 32 155 44 HOH HOH A . F 5 HOH 33 156 45 HOH HOH A . F 5 HOH 34 158 47 HOH HOH A . F 5 HOH 35 159 48 HOH HOH A . F 5 HOH 36 160 49 HOH HOH A . F 5 HOH 37 161 50 HOH HOH A . F 5 HOH 38 162 51 HOH HOH A . F 5 HOH 39 163 52 HOH HOH A . F 5 HOH 40 164 53 HOH HOH A . F 5 HOH 41 167 56 HOH HOH A . F 5 HOH 42 170 59 HOH HOH A . F 5 HOH 43 171 60 HOH HOH A . F 5 HOH 44 172 61 HOH HOH A . F 5 HOH 45 174 63 HOH HOH A . F 5 HOH 46 175 64 HOH HOH A . F 5 HOH 47 179 68 HOH HOH A . F 5 HOH 48 180 69 HOH HOH A . F 5 HOH 49 182 71 HOH HOH A . F 5 HOH 50 183 72 HOH HOH A . F 5 HOH 51 184 73 HOH HOH A . F 5 HOH 52 185 74 HOH HOH A . F 5 HOH 53 187 76 HOH HOH A . F 5 HOH 54 188 77 HOH HOH A . F 5 HOH 55 190 79 HOH HOH A . F 5 HOH 56 193 82 HOH HOH A . F 5 HOH 57 205 92 HOH HOH A . F 5 HOH 58 207 94 HOH HOH A . F 5 HOH 59 211 98 HOH HOH A . F 5 HOH 60 214 101 HOH HOH A . F 5 HOH 61 219 106 HOH HOH A . F 5 HOH 62 220 107 HOH HOH A . F 5 HOH 63 226 113 HOH HOH A . F 5 HOH 64 227 114 HOH HOH A . F 5 HOH 65 228 115 HOH HOH A . F 5 HOH 66 229 116 HOH HOH A . F 5 HOH 67 230 117 HOH HOH A . F 5 HOH 68 231 118 HOH HOH A . F 5 HOH 69 234 121 HOH HOH A . F 5 HOH 70 237 124 HOH HOH A . F 5 HOH 71 238 125 HOH HOH A . F 5 HOH 72 239 126 HOH HOH A . F 5 HOH 73 240 127 HOH HOH A . F 5 HOH 74 245 132 HOH HOH A . F 5 HOH 75 246 133 HOH HOH A . F 5 HOH 76 247 134 HOH HOH A . F 5 HOH 77 251 138 HOH HOH A . F 5 HOH 78 253 140 HOH HOH A . F 5 HOH 79 254 141 HOH HOH A . F 5 HOH 80 255 142 HOH HOH A . G 5 HOH 1 3 3 HOH HOH B . G 5 HOH 2 4 4 HOH HOH B . G 5 HOH 3 6 6 HOH HOH B . G 5 HOH 4 10 10 HOH HOH B . G 5 HOH 5 12 12 HOH HOH B . G 5 HOH 6 13 13 HOH HOH B . G 5 HOH 7 15 15 HOH HOH B . G 5 HOH 8 18 18 HOH HOH B . G 5 HOH 9 19 19 HOH HOH B . G 5 HOH 10 21 21 HOH HOH B . G 5 HOH 11 25 25 HOH HOH B . G 5 HOH 12 26 26 HOH HOH B . G 5 HOH 13 27 27 HOH HOH B . G 5 HOH 14 28 28 HOH HOH B . G 5 HOH 15 30 30 HOH HOH B . G 5 HOH 16 144 38 HOH HOH B . G 5 HOH 17 145 145 HOH HOH B . G 5 HOH 18 146 40 HOH HOH B . G 5 HOH 19 147 147 HOH HOH B . G 5 HOH 20 148 148 HOH HOH B . G 5 HOH 21 149 149 HOH HOH B . G 5 HOH 22 150 41 HOH HOH B . G 5 HOH 23 152 152 HOH HOH B . G 5 HOH 24 153 153 HOH HOH B . G 5 HOH 25 157 46 HOH HOH B . G 5 HOH 26 165 54 HOH HOH B . G 5 HOH 27 166 55 HOH HOH B . G 5 HOH 28 168 57 HOH HOH B . G 5 HOH 29 169 58 HOH HOH B . G 5 HOH 30 173 62 HOH HOH B . G 5 HOH 31 176 65 HOH HOH B . G 5 HOH 32 177 66 HOH HOH B . G 5 HOH 33 178 67 HOH HOH B . G 5 HOH 34 181 70 HOH HOH B . G 5 HOH 35 186 75 HOH HOH B . G 5 HOH 36 189 78 HOH HOH B . G 5 HOH 37 191 80 HOH HOH B . G 5 HOH 38 192 81 HOH HOH B . G 5 HOH 39 194 83 HOH HOH B . G 5 HOH 40 195 84 HOH HOH B . G 5 HOH 41 196 85 HOH HOH B . G 5 HOH 42 197 86 HOH HOH B . G 5 HOH 43 198 87 HOH HOH B . G 5 HOH 44 199 88 HOH HOH B . G 5 HOH 45 200 89 HOH HOH B . G 5 HOH 46 204 91 HOH HOH B . G 5 HOH 47 206 93 HOH HOH B . G 5 HOH 48 208 95 HOH HOH B . G 5 HOH 49 209 96 HOH HOH B . G 5 HOH 50 210 97 HOH HOH B . G 5 HOH 51 212 99 HOH HOH B . G 5 HOH 52 213 100 HOH HOH B . G 5 HOH 53 215 102 HOH HOH B . G 5 HOH 54 216 103 HOH HOH B . G 5 HOH 55 217 104 HOH HOH B . G 5 HOH 56 218 105 HOH HOH B . G 5 HOH 57 221 108 HOH HOH B . G 5 HOH 58 222 109 HOH HOH B . G 5 HOH 59 223 110 HOH HOH B . G 5 HOH 60 224 111 HOH HOH B . G 5 HOH 61 225 112 HOH HOH B . G 5 HOH 62 232 119 HOH HOH B . G 5 HOH 63 233 120 HOH HOH B . G 5 HOH 64 235 122 HOH HOH B . G 5 HOH 65 236 123 HOH HOH B . G 5 HOH 66 241 128 HOH HOH B . G 5 HOH 67 242 129 HOH HOH B . G 5 HOH 68 243 130 HOH HOH B . G 5 HOH 69 244 131 HOH HOH B . G 5 HOH 70 248 135 HOH HOH B . G 5 HOH 71 249 136 HOH HOH B . G 5 HOH 72 250 137 HOH HOH B . G 5 HOH 73 252 139 HOH HOH B . G 5 HOH 74 256 143 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 8 A MSE 45 ? MET SELENOMETHIONINE 2 A MSE 20 A MSE 57 ? MET SELENOMETHIONINE 3 A MSE 96 A MSE 133 ? MET SELENOMETHIONINE 4 B MSE 8 B MSE 45 ? MET SELENOMETHIONINE 5 B MSE 20 B MSE 57 ? MET SELENOMETHIONINE 6 B MSE 96 B MSE 133 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 22860 ? 1 MORE -151.2 ? 1 'SSA (A^2)' 25860 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A GLY 48 ? A GLY 85 ? 1_555 K ? C K . ? A K 201 ? 1_555 O ? A GLY 50 ? A GLY 87 ? 1_555 88.3 ? 2 O ? A GLY 48 ? A GLY 85 ? 1_555 K ? C K . ? A K 201 ? 1_555 O ? B GLY 48 ? B GLY 85 ? 1_555 176.1 ? 3 O ? A GLY 50 ? A GLY 87 ? 1_555 K ? C K . ? A K 201 ? 1_555 O ? B GLY 48 ? B GLY 85 ? 1_555 92.2 ? 4 O ? A GLY 48 ? A GLY 85 ? 1_555 K ? C K . ? A K 201 ? 1_555 O ? B GLY 50 ? B GLY 87 ? 1_555 91.0 ? 5 O ? A GLY 50 ? A GLY 87 ? 1_555 K ? C K . ? A K 201 ? 1_555 O ? B GLY 50 ? B GLY 87 ? 1_555 173.6 ? 6 O ? B GLY 48 ? B GLY 85 ? 1_555 K ? C K . ? A K 201 ? 1_555 O ? B GLY 50 ? B GLY 87 ? 1_555 88.0 ? 7 O ? A GLY 48 ? A GLY 85 ? 1_555 K ? C K . ? A K 201 ? 1_555 O ? G HOH . ? B HOH 166 ? 1_555 90.7 ? 8 O ? A GLY 50 ? A GLY 87 ? 1_555 K ? C K . ? A K 201 ? 1_555 O ? G HOH . ? B HOH 166 ? 1_555 95.3 ? 9 O ? B GLY 48 ? B GLY 85 ? 1_555 K ? C K . ? A K 201 ? 1_555 O ? G HOH . ? B HOH 166 ? 1_555 93.1 ? 10 O ? B GLY 50 ? B GLY 87 ? 1_555 K ? C K . ? A K 201 ? 1_555 O ? G HOH . ? B HOH 166 ? 1_555 91.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-01-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.900 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 16144 _diffrn_reflns.pdbx_Rmerge_I_obs 0.091 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 2.37 _diffrn_reflns.av_sigmaI_over_netI 30.42 _diffrn_reflns.pdbx_redundancy 5.60 _diffrn_reflns.pdbx_percent_possible_obs 95.70 _diffrn_reflns.number 91098 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.16 50.00 ? ? 0.090 ? 12.599 6.10 96.30 1 4.09 5.16 ? ? 0.069 ? 5.923 5.00 95.40 1 3.58 4.09 ? ? 0.067 ? 4.509 5.60 99.80 1 3.25 3.58 ? ? 0.072 ? 3.533 5.80 99.90 1 3.02 3.25 ? ? 0.082 ? 2.703 5.90 100.00 1 2.84 3.02 ? ? 0.092 ? 2.035 5.90 99.90 1 2.70 2.84 ? ? 0.110 ? 1.790 5.90 99.90 1 2.58 2.70 ? ? 0.119 ? 1.559 6.10 100.00 1 2.48 2.58 ? ? 0.116 ? 1.312 6.00 100.00 1 2.39 2.48 ? ? 0.138 ? 1.238 6.00 100.00 1 2.32 2.39 ? ? 0.160 ? 1.126 6.10 100.00 1 2.25 2.32 ? ? 0.178 ? 1.032 6.00 100.00 1 2.19 2.25 ? ? 0.185 ? 0.905 5.90 100.00 1 2.14 2.19 ? ? 0.212 ? 0.891 5.70 100.00 1 2.09 2.14 ? ? 0.222 ? 0.818 5.40 98.80 1 2.05 2.09 ? ? 0.258 ? 0.812 5.10 96.30 1 2.01 2.05 ? ? 0.288 ? 0.795 5.10 90.70 1 1.97 2.01 ? ? 0.327 ? 0.733 5.20 84.20 1 1.93 1.97 ? ? 0.392 ? 0.766 4.90 79.50 1 1.90 1.93 ? ? 0.486 ? 0.711 4.50 73.60 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 16.3288 6.7520 33.5816 0.0148 0.0370 0.0606 -0.0059 -0.0047 0.0114 2.1249 2.5377 2.1390 -0.2736 0.3458 0.7382 0.0166 -0.0619 0.0452 0.0260 0.2274 -0.2561 0.0397 -0.1282 -0.0299 'X-RAY DIFFRACTION' 2 ? refined 17.6172 0.7754 30.7089 0.0126 0.0527 0.0607 -0.0056 0.0151 0.0017 2.2041 2.8456 1.6585 -0.4823 0.0707 0.6650 0.0668 -0.0448 -0.0220 0.1328 -0.0296 -0.2897 -0.1106 0.0661 -0.0284 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 43 A 139 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 43 B 139 ? . . . . ? # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.reflns_acentric _pdbx_phasing_MAD_set.loc_acentric _pdbx_phasing_MAD_set.power_acentric _pdbx_phasing_MAD_set.R_cullis_acentric _pdbx_phasing_MAD_set.reflns_centric _pdbx_phasing_MAD_set.loc_centric _pdbx_phasing_MAD_set.power_centric _pdbx_phasing_MAD_set.R_cullis_centric 1 1.90 50.00 16072 0.300 0.000 1.610 0 0.000 0.000 0.000 2 1.90 50.00 14164 11.300 0.660 0.900 0 0.000 0.000 0.000 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.loc_acentric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.loc_centric _pdbx_phasing_MAD_set_shell.power_centric _pdbx_phasing_MAD_set_shell.R_cullis_centric 1 12.01 50.00 53 1.600 0.000 1.660 0 0.000 0.000 0.000 1 6.82 12.01 284 1.400 0.000 1.430 0 0.000 0.000 0.000 1 4.76 6.82 669 1.000 0.000 1.410 0 0.000 0.000 0.000 1 3.66 4.76 1275 0.600 0.000 1.040 0 0.000 0.000 0.000 1 2.97 3.66 2050 0.300 0.000 1.360 0 0.000 0.000 0.000 1 2.50 2.97 2962 0.200 0.000 3.020 0 0.000 0.000 0.000 1 2.16 2.50 4059 0.100 0.000 5.920 0 0.000 0.000 0.000 1 1.90 2.16 4720 0.100 0.000 1.960 0 0.000 0.000 0.000 2 12.01 50.00 51 19.200 1.930 0.740 0 0.000 0.000 0.000 2 6.82 12.01 280 19.600 1.620 0.780 0 0.000 0.000 0.000 2 4.76 6.82 668 16.300 1.610 0.740 0 0.000 0.000 0.000 2 3.66 4.76 1272 17.300 0.980 0.830 0 0.000 0.000 0.000 2 2.97 3.66 2049 12.600 0.820 0.870 0 0.000 0.000 0.000 2 2.50 2.97 2957 9.500 0.590 0.930 0 0.000 0.000 0.000 2 2.16 2.50 4058 9.400 0.330 0.970 0 0.000 0.000 0.000 2 1.90 2.16 2829 9.900 0.200 0.990 0 0.000 0.000 0.000 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso _pdbx_phasing_MAD_set_site.occupancy 1 Se -0.444 -0.821 -0.095 56.90908 0.000 2 Se -0.455 -0.813 0.052 40.21751 0.000 3 Se -0.579 -0.833 -0.038 27.10509 0.000 4 Se -0.404 -0.910 0.003 37.58850 0.000 5 Se -0.303 -0.836 -0.100 73.88927 0.000 6 Se -0.263 -0.806 0.054 43.29974 0.000 7 Se -0.444 -0.821 -0.096 60.29614 -0.148 8 Se -0.455 -0.813 0.051 43.25515 -0.150 9 Se -0.579 -0.834 -0.039 30.80310 -0.115 10 Se -0.404 -0.910 0.002 36.22847 -0.087 11 Se -0.303 -0.836 -0.101 77.62359 -0.100 12 Se -0.262 -0.806 0.054 51.33330 -0.101 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric 12.01 50.00 0 0.000 0 0.000 53 0.688 6.82 12.01 -1073754472 0.000 0 0.000 284 0.718 4.76 6.82 0 0.000 0 0.000 669 0.743 3.66 4.76 0 0.000 0 0.000 1275 0.641 2.97 3.66 135909581 0.000 0 0.000 2050 0.596 2.50 2.97 3 0.000 0 0.000 2962 0.429 2.16 2.50 -1 0.000 0 0.000 4059 0.258 1.90 2.16 0 0.000 0 0.000 4720 0.114 # _pdbx_phasing_dm.entry_id 3FN2 _pdbx_phasing_dm.method 'Solvent flattening and histogram matching' _pdbx_phasing_dm.reflns 16072 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 6.010 100.000 47.100 ? ? ? 0.840 ? ? 508 4.750 6.010 43.300 ? ? ? 0.921 ? ? 516 4.150 4.750 46.000 ? ? ? 0.937 ? ? 513 3.790 4.150 44.800 ? ? ? 0.915 ? ? 512 3.530 3.790 42.700 ? ? ? 0.917 ? ? 518 3.320 3.530 47.500 ? ? ? 0.905 ? ? 505 3.160 3.320 46.500 ? ? ? 0.901 ? ? 515 3.020 3.160 44.700 ? ? ? 0.886 ? ? 532 2.900 3.020 52.400 ? ? ? 0.860 ? ? 532 2.790 2.900 48.900 ? ? ? 0.867 ? ? 574 2.690 2.790 54.200 ? ? ? 0.828 ? ? 600 2.610 2.690 56.700 ? ? ? 0.840 ? ? 610 2.530 2.610 56.500 ? ? ? 0.840 ? ? 622 2.450 2.530 58.800 ? ? ? 0.844 ? ? 655 2.390 2.450 59.500 ? ? ? 0.821 ? ? 674 2.330 2.390 60.600 ? ? ? 0.804 ? ? 699 2.270 2.330 62.600 ? ? ? 0.800 ? ? 698 2.220 2.270 68.900 ? ? ? 0.812 ? ? 731 2.170 2.220 69.300 ? ? ? 0.834 ? ? 764 2.120 2.170 72.100 ? ? ? 0.818 ? ? 747 2.080 2.120 73.700 ? ? ? 0.821 ? ? 759 2.030 2.080 77.400 ? ? ? 0.847 ? ? 780 2.000 2.030 75.500 ? ? ? 0.828 ? ? 716 1.960 2.000 76.900 ? ? ? 0.779 ? ? 664 1.900 1.960 79.000 ? ? ? 0.747 ? ? 1128 # _phasing.method MAD # _phasing_MAD.entry_id 3FN2 _phasing_MAD.pdbx_d_res_high 1.90 _phasing_MAD.pdbx_d_res_low 50.00 _phasing_MAD.pdbx_reflns 0 _phasing_MAD.pdbx_fom 0.000 _phasing_MAD.pdbx_reflns_centric 0 _phasing_MAD.pdbx_fom_centric 0.000 _phasing_MAD.pdbx_reflns_acentric 16072 _phasing_MAD.pdbx_fom_acentric 0.350 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 MLPHARE . ? other 'Eleanor J. Dodson' ccp4@ccp4.ac.uk phasing http://www.ccp4.ac.uk/dist/html/mlphare.html Fortran_77 ? 3 DM 6.0 ? program 'Kevin Cowtan' kowtan@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/dm.html Fortran_77 ? 4 REFMAC 5.5.0054 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 7 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 9 HKL-3000 . ? ? ? ? phasing ? ? ? 10 SHELXD . ? ? ? ? phasing ? ? ? 11 SHELXE . ? ? ? ? 'model building' ? ? ? 12 SOLVE . ? ? ? ? phasing ? ? ? 13 RESOLVE . ? ? ? ? phasing ? ? ? 14 ARP/wARP . ? ? ? ? 'model building' ? ? ? 15 CCP4 . ? ? ? ? phasing ? ? ? 16 O . ? ? ? ? 'model building' ? ? ? 17 Coot . ? ? ? ? 'model building' ? ? ? 18 # _pdbx_entry_details.entry_id 3FN2 _pdbx_entry_details.sequence_details ;THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 25 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 149 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.04 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLN _pdbx_validate_rmsd_bond.auth_seq_id_1 107 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLN _pdbx_validate_rmsd_bond.auth_seq_id_2 107 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.313 _pdbx_validate_rmsd_bond.bond_target_value 1.521 _pdbx_validate_rmsd_bond.bond_deviation -0.208 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.027 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 105 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -34.50 _pdbx_validate_torsion.psi -31.10 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B GLU 74 ? CG ? B GLU 37 CG 2 1 Y 1 B GLU 74 ? CD ? B GLU 37 CD 3 1 Y 1 B GLU 74 ? OE1 ? B GLU 37 OE1 4 1 Y 1 B GLU 74 ? OE2 ? B GLU 37 OE2 5 1 Y 1 B GLU 76 ? CG ? B GLU 39 CG 6 1 Y 1 B GLU 76 ? CD ? B GLU 39 CD 7 1 Y 1 B GLU 76 ? OE1 ? B GLU 39 OE1 8 1 Y 1 B GLU 76 ? OE2 ? B GLU 39 OE2 9 1 Y 1 B GLN 97 ? CG ? B GLN 60 CG 10 1 Y 1 B GLN 97 ? CD ? B GLN 60 CD 11 1 Y 1 B GLN 97 ? OE1 ? B GLN 60 OE1 12 1 Y 1 B GLN 97 ? NE2 ? B GLN 60 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 38 ? A SER 1 2 1 Y 1 A ASN 39 ? A ASN 2 3 1 Y 1 A ALA 40 ? A ALA 3 4 1 Y 1 A ASN 41 ? A ASN 4 5 1 Y 1 A GLY 42 ? A GLY 5 6 1 Y 1 A GLU 140 ? A GLU 103 7 1 Y 1 A LYS 141 ? A LYS 104 8 1 Y 1 A GLN 142 ? A GLN 105 9 1 Y 1 A ASN 143 ? A ASN 106 10 1 Y 1 B SER 38 ? B SER 1 11 1 Y 1 B ASN 39 ? B ASN 2 12 1 Y 1 B ALA 40 ? B ALA 3 13 1 Y 1 B ASN 41 ? B ASN 4 14 1 Y 1 B GLY 42 ? B GLY 5 15 1 Y 1 B GLU 140 ? B GLU 103 16 1 Y 1 B LYS 141 ? B LYS 104 17 1 Y 1 B GLN 142 ? B GLN 105 18 1 Y 1 B ASN 143 ? B ASN 106 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'PHOSPHATE ION' PO4 4 1,2-ETHANEDIOL EDO 5 water HOH #