HEADER OXIDOREDUCTASE 29-DEC-08 3FOB TITLE CRYSTAL STRUCTURE OF BROMOPEROXIDASE FROM BACILLUS ANTHRACIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMOPEROXIDASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS STR.; SOURCE 3 ORGANISM_COMMON: ANTHRAX BACTERIUM; SOURCE 4 ORGANISM_TAXID: 198094; SOURCE 5 STRAIN: AMES; SOURCE 6 GENE: BAS2941, BA_3165, GBAA3165; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, IDP00046, BROMOPEROXIDASE, BACILLUS ANTHRACIS, KEYWDS 2 PEROXIDASE, OXIDOREDUCTASE, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 3 INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,M.GU,J.STAM,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 5 22-NOV-23 3FOB 1 REMARK REVDAT 4 06-SEP-23 3FOB 1 REMARK SEQADV LINK REVDAT 3 01-NOV-17 3FOB 1 REMARK REVDAT 2 13-JUL-11 3FOB 1 VERSN REVDAT 1 06-JAN-09 3FOB 0 JRNL AUTH J.OSIPIUK,M.GU,J.STAM,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL X-RAY CRYSTAL STRUCTURE OF BROMOPEROXIDASE FROM BACILLUS JRNL TITL 2 ANTHRACIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 75908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3809 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4977 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 275 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6524 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 723 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.303 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6885 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4629 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9393 ; 1.680 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11309 ; 0.977 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 883 ; 5.888 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 334 ;37.053 ;24.401 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1115 ;15.673 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;14.598 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1012 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7845 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1451 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4207 ; 0.965 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1727 ; 0.338 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6797 ; 1.607 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2678 ; 2.710 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2570 ; 4.192 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 278 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2951 -24.0709 100.2243 REMARK 3 T TENSOR REMARK 3 T11: 0.0386 T22: 0.0070 REMARK 3 T33: 0.0034 T12: 0.0085 REMARK 3 T13: -0.0047 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.6510 L22: 0.4899 REMARK 3 L33: 0.8466 L12: 0.0989 REMARK 3 L13: 0.0380 L23: -0.0585 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.0097 S13: -0.0084 REMARK 3 S21: 0.0313 S22: -0.0122 S23: 0.0220 REMARK 3 S31: 0.0619 S32: 0.0325 S33: -0.0036 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 278 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1528 -12.8519 66.7350 REMARK 3 T TENSOR REMARK 3 T11: 0.0138 T22: 0.0235 REMARK 3 T33: 0.0147 T12: -0.0002 REMARK 3 T13: -0.0062 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.0020 L22: 0.3730 REMARK 3 L33: 0.9364 L12: 0.1500 REMARK 3 L13: -0.0991 L23: 0.1349 REMARK 3 S TENSOR REMARK 3 S11: 0.0271 S12: 0.0644 S13: 0.0701 REMARK 3 S21: 0.0157 S22: -0.0045 S23: 0.0165 REMARK 3 S31: 0.0129 S32: 0.0973 S33: -0.0227 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 278 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4916 -24.9977 69.4002 REMARK 3 T TENSOR REMARK 3 T11: 0.0211 T22: 0.0264 REMARK 3 T33: 0.0496 T12: -0.0039 REMARK 3 T13: -0.0135 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.4489 L22: 0.5339 REMARK 3 L33: 0.8451 L12: 0.1310 REMARK 3 L13: -0.0918 L23: 0.0458 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: 0.0430 S13: 0.0723 REMARK 3 S21: 0.0248 S22: 0.0176 S23: 0.1182 REMARK 3 S31: -0.0007 S32: -0.1398 S33: 0.0165 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3FOB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76114 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 28.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.4050 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.65100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, HKL-3000 REMARK 200 STARTING MODEL: PDB ENTRY 1BRO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M HEPES REMARK 280 BUFFER, 25% PEG 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.16300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ACCORDING TO AUTHORS, THE BIOLOGICAL UNIT ASSEMBLY THAT IS REMARK 300 SHOWN IN REMARK 350 IS PUTATIVE AT THE TIME OF DEPOSITION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 THR B 5 REMARK 465 VAL B 6 REMARK 465 GLY B 7 REMARK 465 THR B 8 REMARK 465 GLU B 9 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MSE C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 218 O HOH B 474 1.94 REMARK 500 OE1 GLU A 267 O HOH A 638 2.04 REMARK 500 O HOH C 515 O HOH C 699 2.04 REMARK 500 O HOH B 295 O HOH B 685 2.05 REMARK 500 OE2 GLU B 70 O HOH B 357 2.09 REMARK 500 OE1 GLU A 267 O HOH A 502 2.10 REMARK 500 ND1 HIS B 21 O HOH B 720 2.15 REMARK 500 O HOH A 354 O HOH A 542 2.16 REMARK 500 OD1 ASN B 10 O HOH B 643 2.16 REMARK 500 OE1 GLU C 180 NH1 ARG C 183 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 38 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 41.65 39.29 REMARK 500 PRO A 34 54.56 -103.44 REMARK 500 LEU A 35 -136.11 -98.50 REMARK 500 GLN A 67 74.65 -118.18 REMARK 500 SER A 99 -120.67 49.25 REMARK 500 TYR A 129 104.73 -175.30 REMARK 500 ASP A 156 83.75 -161.16 REMARK 500 SER A 237 -92.67 -150.74 REMARK 500 PRO B 34 52.31 -104.96 REMARK 500 LEU B 35 -133.24 -98.26 REMARK 500 SER B 99 -119.13 48.01 REMARK 500 TYR B 129 105.03 -175.31 REMARK 500 ASP B 156 84.17 -153.84 REMARK 500 SER B 237 -94.43 -149.19 REMARK 500 ASN B 247 -3.34 75.08 REMARK 500 GLN C 11 -1.13 68.42 REMARK 500 PRO C 34 59.26 -110.48 REMARK 500 LEU C 35 -139.30 -103.38 REMARK 500 SER C 99 -117.17 52.44 REMARK 500 TYR C 129 104.23 179.80 REMARK 500 ASP C 156 87.22 -155.18 REMARK 500 ASN C 218 43.61 -141.98 REMARK 500 SER C 237 -87.37 -142.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 117 O REMARK 620 2 HOH A 424 O 95.5 REMARK 620 3 HOH A 531 O 95.5 107.3 REMARK 620 4 HOH A 603 O 170.8 90.5 89.3 REMARK 620 5 HOH A 682 O 71.5 109.8 141.6 100.0 REMARK 620 6 HOH A 706 O 84.3 176.7 69.5 90.1 73.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 281 O REMARK 620 2 HOH A 284 O 90.1 REMARK 620 3 HOH A 328 O 92.2 88.9 REMARK 620 4 HOH B 365 O 176.9 87.3 86.0 REMARK 620 5 HOH C 289 O 91.0 89.5 176.4 90.7 REMARK 620 6 HOH C 308 O 93.2 176.3 92.7 89.4 88.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BRO RELATED DB: PDB REMARK 900 BROMOPEROXIDASE A2 REMARK 900 RELATED ID: IDP00046 RELATED DB: TARGETDB DBREF 3FOB A 1 278 UNP Q81NM3 Q81NM3_BACAN 1 278 DBREF 3FOB B 1 278 UNP Q81NM3 Q81NM3_BACAN 1 278 DBREF 3FOB C 1 278 UNP Q81NM3 Q81NM3_BACAN 1 278 SEQADV 3FOB SER A -2 UNP Q81NM3 EXPRESSION TAG SEQADV 3FOB ASN A -1 UNP Q81NM3 EXPRESSION TAG SEQADV 3FOB ALA A 0 UNP Q81NM3 EXPRESSION TAG SEQADV 3FOB SER B -2 UNP Q81NM3 EXPRESSION TAG SEQADV 3FOB ASN B -1 UNP Q81NM3 EXPRESSION TAG SEQADV 3FOB ALA B 0 UNP Q81NM3 EXPRESSION TAG SEQADV 3FOB SER C -2 UNP Q81NM3 EXPRESSION TAG SEQADV 3FOB ASN C -1 UNP Q81NM3 EXPRESSION TAG SEQADV 3FOB ALA C 0 UNP Q81NM3 EXPRESSION TAG SEQRES 1 A 281 SER ASN ALA MSE ALA LYS ILE THR VAL GLY THR GLU ASN SEQRES 2 A 281 GLN ALA PRO ILE GLU ILE TYR TYR GLU ASP HIS GLY THR SEQRES 3 A 281 GLY LYS PRO VAL VAL LEU ILE HIS GLY TRP PRO LEU SER SEQRES 4 A 281 GLY ARG SER TRP GLU TYR GLN VAL PRO ALA LEU VAL GLU SEQRES 5 A 281 ALA GLY TYR ARG VAL ILE THR TYR ASP ARG ARG GLY PHE SEQRES 6 A 281 GLY LYS SER SER GLN PRO TRP GLU GLY TYR GLU TYR ASP SEQRES 7 A 281 THR PHE THR SER ASP LEU HIS GLN LEU LEU GLU GLN LEU SEQRES 8 A 281 GLU LEU GLN ASN VAL THR LEU VAL GLY PHE SER MSE GLY SEQRES 9 A 281 GLY GLY GLU VAL ALA ARG TYR ILE SER THR TYR GLY THR SEQRES 10 A 281 ASP ARG ILE GLU LYS VAL VAL PHE ALA GLY ALA VAL PRO SEQRES 11 A 281 PRO TYR LEU TYR LYS SER GLU ASP HIS PRO GLU GLY ALA SEQRES 12 A 281 LEU ASP ASP ALA THR ILE GLU THR PHE LYS SER GLY VAL SEQRES 13 A 281 ILE ASN ASP ARG LEU ALA PHE LEU ASP GLU PHE THR LYS SEQRES 14 A 281 GLY PHE PHE ALA ALA GLY ASP ARG THR ASP LEU VAL SER SEQRES 15 A 281 GLU SER PHE ARG LEU TYR ASN TRP ASP ILE ALA ALA GLY SEQRES 16 A 281 ALA SER PRO LYS GLY THR LEU ASP CYS ILE THR ALA PHE SEQRES 17 A 281 SER LYS THR ASP PHE ARG LYS ASP LEU GLU LYS PHE ASN SEQRES 18 A 281 ILE PRO THR LEU ILE ILE HIS GLY ASP SER ASP ALA THR SEQRES 19 A 281 VAL PRO PHE GLU TYR SER GLY LYS LEU THR HIS GLU ALA SEQRES 20 A 281 ILE PRO ASN SER LYS VAL ALA LEU ILE LYS GLY GLY PRO SEQRES 21 A 281 HIS GLY LEU ASN ALA THR HIS ALA LYS GLU PHE ASN GLU SEQRES 22 A 281 ALA LEU LEU LEU PHE LEU LYS ASP SEQRES 1 B 281 SER ASN ALA MSE ALA LYS ILE THR VAL GLY THR GLU ASN SEQRES 2 B 281 GLN ALA PRO ILE GLU ILE TYR TYR GLU ASP HIS GLY THR SEQRES 3 B 281 GLY LYS PRO VAL VAL LEU ILE HIS GLY TRP PRO LEU SER SEQRES 4 B 281 GLY ARG SER TRP GLU TYR GLN VAL PRO ALA LEU VAL GLU SEQRES 5 B 281 ALA GLY TYR ARG VAL ILE THR TYR ASP ARG ARG GLY PHE SEQRES 6 B 281 GLY LYS SER SER GLN PRO TRP GLU GLY TYR GLU TYR ASP SEQRES 7 B 281 THR PHE THR SER ASP LEU HIS GLN LEU LEU GLU GLN LEU SEQRES 8 B 281 GLU LEU GLN ASN VAL THR LEU VAL GLY PHE SER MSE GLY SEQRES 9 B 281 GLY GLY GLU VAL ALA ARG TYR ILE SER THR TYR GLY THR SEQRES 10 B 281 ASP ARG ILE GLU LYS VAL VAL PHE ALA GLY ALA VAL PRO SEQRES 11 B 281 PRO TYR LEU TYR LYS SER GLU ASP HIS PRO GLU GLY ALA SEQRES 12 B 281 LEU ASP ASP ALA THR ILE GLU THR PHE LYS SER GLY VAL SEQRES 13 B 281 ILE ASN ASP ARG LEU ALA PHE LEU ASP GLU PHE THR LYS SEQRES 14 B 281 GLY PHE PHE ALA ALA GLY ASP ARG THR ASP LEU VAL SER SEQRES 15 B 281 GLU SER PHE ARG LEU TYR ASN TRP ASP ILE ALA ALA GLY SEQRES 16 B 281 ALA SER PRO LYS GLY THR LEU ASP CYS ILE THR ALA PHE SEQRES 17 B 281 SER LYS THR ASP PHE ARG LYS ASP LEU GLU LYS PHE ASN SEQRES 18 B 281 ILE PRO THR LEU ILE ILE HIS GLY ASP SER ASP ALA THR SEQRES 19 B 281 VAL PRO PHE GLU TYR SER GLY LYS LEU THR HIS GLU ALA SEQRES 20 B 281 ILE PRO ASN SER LYS VAL ALA LEU ILE LYS GLY GLY PRO SEQRES 21 B 281 HIS GLY LEU ASN ALA THR HIS ALA LYS GLU PHE ASN GLU SEQRES 22 B 281 ALA LEU LEU LEU PHE LEU LYS ASP SEQRES 1 C 281 SER ASN ALA MSE ALA LYS ILE THR VAL GLY THR GLU ASN SEQRES 2 C 281 GLN ALA PRO ILE GLU ILE TYR TYR GLU ASP HIS GLY THR SEQRES 3 C 281 GLY LYS PRO VAL VAL LEU ILE HIS GLY TRP PRO LEU SER SEQRES 4 C 281 GLY ARG SER TRP GLU TYR GLN VAL PRO ALA LEU VAL GLU SEQRES 5 C 281 ALA GLY TYR ARG VAL ILE THR TYR ASP ARG ARG GLY PHE SEQRES 6 C 281 GLY LYS SER SER GLN PRO TRP GLU GLY TYR GLU TYR ASP SEQRES 7 C 281 THR PHE THR SER ASP LEU HIS GLN LEU LEU GLU GLN LEU SEQRES 8 C 281 GLU LEU GLN ASN VAL THR LEU VAL GLY PHE SER MSE GLY SEQRES 9 C 281 GLY GLY GLU VAL ALA ARG TYR ILE SER THR TYR GLY THR SEQRES 10 C 281 ASP ARG ILE GLU LYS VAL VAL PHE ALA GLY ALA VAL PRO SEQRES 11 C 281 PRO TYR LEU TYR LYS SER GLU ASP HIS PRO GLU GLY ALA SEQRES 12 C 281 LEU ASP ASP ALA THR ILE GLU THR PHE LYS SER GLY VAL SEQRES 13 C 281 ILE ASN ASP ARG LEU ALA PHE LEU ASP GLU PHE THR LYS SEQRES 14 C 281 GLY PHE PHE ALA ALA GLY ASP ARG THR ASP LEU VAL SER SEQRES 15 C 281 GLU SER PHE ARG LEU TYR ASN TRP ASP ILE ALA ALA GLY SEQRES 16 C 281 ALA SER PRO LYS GLY THR LEU ASP CYS ILE THR ALA PHE SEQRES 17 C 281 SER LYS THR ASP PHE ARG LYS ASP LEU GLU LYS PHE ASN SEQRES 18 C 281 ILE PRO THR LEU ILE ILE HIS GLY ASP SER ASP ALA THR SEQRES 19 C 281 VAL PRO PHE GLU TYR SER GLY LYS LEU THR HIS GLU ALA SEQRES 20 C 281 ILE PRO ASN SER LYS VAL ALA LEU ILE LYS GLY GLY PRO SEQRES 21 C 281 HIS GLY LEU ASN ALA THR HIS ALA LYS GLU PHE ASN GLU SEQRES 22 C 281 ALA LEU LEU LEU PHE LEU LYS ASP MODRES 3FOB MSE A 100 MET SELENOMETHIONINE MODRES 3FOB MSE B 1 MET SELENOMETHIONINE MODRES 3FOB MSE B 100 MET SELENOMETHIONINE MODRES 3FOB MSE C 100 MET SELENOMETHIONINE HET MSE A 100 8 HET MSE B 1 8 HET MSE B 100 8 HET MSE C 100 8 HET CL A 401 1 HET NA A 404 1 HET NA A 405 1 HET CL B 402 1 HET CL C 403 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 4 CL 3(CL 1-) FORMUL 5 NA 2(NA 1+) FORMUL 9 HOH *723(H2 O) HELIX 1 1 SER A 36 GLU A 41 5 6 HELIX 2 2 GLN A 43 ALA A 50 1 8 HELIX 3 3 GLU A 73 LEU A 88 1 16 HELIX 4 4 MSE A 100 GLY A 113 1 14 HELIX 5 5 ASP A 142 PHE A 169 1 28 HELIX 6 6 SER A 179 GLY A 192 1 14 HELIX 7 7 SER A 194 THR A 208 1 15 HELIX 8 8 PHE A 210 GLU A 215 1 6 HELIX 9 9 PRO A 233 TYR A 236 5 4 HELIX 10 10 SER A 237 ILE A 245 1 9 HELIX 11 11 GLY A 259 HIS A 264 1 6 HELIX 12 12 HIS A 264 LYS A 277 1 14 HELIX 13 13 SER B 36 GLU B 41 5 6 HELIX 14 14 GLN B 43 ALA B 50 1 8 HELIX 15 15 GLU B 73 LEU B 88 1 16 HELIX 16 16 MSE B 100 GLY B 113 1 14 HELIX 17 17 ASP B 142 PHE B 169 1 28 HELIX 18 18 SER B 179 GLY B 192 1 14 HELIX 19 19 SER B 194 THR B 208 1 15 HELIX 20 20 PHE B 210 GLU B 215 1 6 HELIX 21 21 PRO B 233 TYR B 236 5 4 HELIX 22 22 SER B 237 ILE B 245 1 9 HELIX 23 23 GLY B 259 HIS B 264 1 6 HELIX 24 24 HIS B 264 ASP B 278 1 15 HELIX 25 25 SER C 36 GLU C 41 5 6 HELIX 26 26 GLN C 43 ALA C 50 1 8 HELIX 27 27 GLU C 73 LEU C 88 1 16 HELIX 28 28 MSE C 100 GLY C 113 1 14 HELIX 29 29 ASP C 142 PHE C 169 1 28 HELIX 30 30 SER C 179 GLY C 192 1 14 HELIX 31 31 SER C 194 THR C 208 1 15 HELIX 32 32 PHE C 210 GLU C 215 1 6 HELIX 33 33 PRO C 233 TYR C 236 5 4 HELIX 34 34 SER C 237 ILE C 245 1 9 HELIX 35 35 GLY C 259 HIS C 264 1 6 HELIX 36 36 HIS C 264 ASP C 278 1 15 SHEET 1 A 8 LYS A 3 GLU A 9 0 SHEET 2 A 8 ALA A 12 HIS A 21 -1 O ILE A 16 N ILE A 4 SHEET 3 A 8 TYR A 52 TYR A 57 -1 O VAL A 54 N HIS A 21 SHEET 4 A 8 LYS A 25 ILE A 30 1 N VAL A 27 O ARG A 53 SHEET 5 A 8 VAL A 93 PHE A 98 1 O VAL A 96 N VAL A 28 SHEET 6 A 8 ILE A 117 ALA A 123 1 O GLU A 118 N VAL A 93 SHEET 7 A 8 THR A 221 GLY A 226 1 O LEU A 222 N PHE A 122 SHEET 8 A 8 LYS A 249 ILE A 253 1 O ALA A 251 N ILE A 223 SHEET 1 B 8 ASN B -1 LYS B 3 0 SHEET 2 B 8 GLU B 15 HIS B 21 -1 O ILE B 16 N ALA B 2 SHEET 3 B 8 TYR B 52 TYR B 57 -1 O VAL B 54 N HIS B 21 SHEET 4 B 8 LYS B 25 ILE B 30 1 N LEU B 29 O ILE B 55 SHEET 5 B 8 VAL B 93 PHE B 98 1 O VAL B 96 N ILE B 30 SHEET 6 B 8 ILE B 117 ALA B 123 1 O VAL B 121 N GLY B 97 SHEET 7 B 8 THR B 221 GLY B 226 1 O LEU B 222 N PHE B 122 SHEET 8 B 8 LYS B 249 ILE B 253 1 O LYS B 249 N ILE B 223 SHEET 1 C 8 LYS C 3 GLU C 9 0 SHEET 2 C 8 ALA C 12 HIS C 21 -1 O ILE C 16 N ILE C 4 SHEET 3 C 8 TYR C 52 TYR C 57 -1 O VAL C 54 N HIS C 21 SHEET 4 C 8 LYS C 25 ILE C 30 1 N VAL C 27 O ARG C 53 SHEET 5 C 8 VAL C 93 PHE C 98 1 O VAL C 96 N VAL C 28 SHEET 6 C 8 ILE C 117 ALA C 123 1 O ALA C 123 N GLY C 97 SHEET 7 C 8 THR C 221 GLY C 226 1 O LEU C 222 N PHE C 122 SHEET 8 C 8 LYS C 249 ILE C 253 1 O ALA C 251 N ILE C 223 LINK C SER A 99 N MSE A 100 1555 1555 1.35 LINK C MSE A 100 N GLY A 101 1555 1555 1.34 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ALA B 2 1555 1555 1.33 LINK C SER B 99 N MSE B 100 1555 1555 1.34 LINK C MSE B 100 N GLY B 101 1555 1555 1.33 LINK C SER C 99 N MSE C 100 1555 1555 1.33 LINK C MSE C 100 N GLY C 101 1555 1555 1.32 LINK O ILE A 117 NA NA A 405 1555 1555 2.42 LINK O HOH A 281 NA NA A 404 1555 1555 2.09 LINK O HOH A 284 NA NA A 404 1555 1555 2.13 LINK O HOH A 328 NA NA A 404 1555 1555 2.06 LINK NA NA A 404 O HOH B 365 1555 1555 2.24 LINK NA NA A 404 O HOH C 289 1555 1555 2.13 LINK NA NA A 404 O HOH C 308 1555 1555 2.14 LINK NA NA A 405 O HOH A 424 1555 1555 2.46 LINK NA NA A 405 O HOH A 531 1555 1555 2.43 LINK NA NA A 405 O HOH A 603 1555 1555 2.14 LINK NA NA A 405 O HOH A 682 1555 1555 2.05 LINK NA NA A 405 O HOH A 706 1555 1555 2.20 CISPEP 1 TRP A 33 PRO A 34 0 -13.26 CISPEP 2 PRO A 127 PRO A 128 0 7.22 CISPEP 3 TRP B 33 PRO B 34 0 -11.69 CISPEP 4 PRO B 127 PRO B 128 0 6.90 CISPEP 5 TRP C 33 PRO C 34 0 -8.52 CISPEP 6 PRO C 127 PRO C 128 0 5.72 SITE 1 AC1 4 TRP A 33 SER A 99 MSE A 100 HOH A 326 SITE 1 AC2 6 HOH A 281 HOH A 284 HOH A 328 HOH B 365 SITE 2 AC2 6 HOH C 289 HOH C 308 SITE 1 AC3 7 ILE A 117 GLU A 118 HOH A 424 HOH A 531 SITE 2 AC3 7 HOH A 603 HOH A 682 HOH A 706 SITE 1 AC4 3 TRP B 33 SER B 99 MSE B 100 SITE 1 AC5 4 TRP C 33 SER C 99 MSE C 100 HOH C 343 CRYST1 77.037 48.326 101.932 90.00 94.05 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012981 0.000000 0.000919 0.00000 SCALE2 0.000000 0.020693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009835 0.00000