HEADER PROTEIN BINDING 07-JAN-09 3FQI TITLE CRYSTAL STRUCTURE OF THE MOUSE DOM3Z COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DOM3Z; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DOM-3 HOMOLOG Z; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DOM3Z, NG6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYDROLASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.XIANG,L.TONG REVDAT 4 21-FEB-24 3FQI 1 SEQADV LINK REVDAT 3 01-NOV-17 3FQI 1 REMARK REVDAT 2 28-APR-09 3FQI 1 JRNL REVDAT 1 03-FEB-09 3FQI 0 JRNL AUTH S.XIANG,A.COOPER-MORGAN,X.JIAO,M.KILEDJIAN,J.L.MANLEY,L.TONG JRNL TITL STRUCTURE AND FUNCTION OF THE 5'-->3' EXORIBONUCLEASE RAT1 JRNL TITL 2 AND ITS ACTIVATING PARTNER RAI1. JRNL REF NATURE V. 458 784 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19194460 JRNL DOI 10.1038/NATURE07731 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 23633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1210 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -1.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.600 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.910 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2936 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3998 ; 1.186 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 345 ; 5.785 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;32.395 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;15.485 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.097 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2330 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1343 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1925 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 261 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.136 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1794 ; 0.474 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2825 ; 0.782 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1331 ; 1.183 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1173 ; 1.838 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 397 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5838 0.5889 14.2332 REMARK 3 T TENSOR REMARK 3 T11: -0.0196 T22: -0.0219 REMARK 3 T33: -0.0125 T12: -0.0001 REMARK 3 T13: 0.0047 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.2864 L22: 0.2266 REMARK 3 L33: 0.4831 L12: 0.1482 REMARK 3 L13: -0.1106 L23: 0.0794 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: 0.0266 S13: 0.0233 REMARK 3 S21: 0.0071 S22: 0.0066 S23: 0.0024 REMARK 3 S31: 0.0176 S32: -0.0218 S33: 0.0158 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23658 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1390 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5) AND 20% (W/V) PEG REMARK 280 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.18950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 ALA A 10 REMARK 465 GLU A 11 REMARK 465 LYS A 12 REMARK 465 THR A 13 REMARK 465 GLU A 14 REMARK 465 VAL A 15 REMARK 465 GLU A 16 REMARK 465 LYS A 17 REMARK 465 PRO A 18 REMARK 465 LEU A 19 REMARK 465 ASN A 20 REMARK 465 LYS A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 ARG A 24 REMARK 465 ALA A 25 REMARK 465 VAL A 26 REMARK 465 PRO A 27 REMARK 465 ILE A 75 REMARK 465 ASN A 76 REMARK 465 GLY A 77 REMARK 465 PRO A 78 REMARK 465 GLY A 79 REMARK 465 LEU A 117 REMARK 465 GLU A 118 REMARK 465 GLY A 119 REMARK 465 GLY A 120 REMARK 465 PRO A 121 REMARK 465 LEU A 386 REMARK 465 PRO A 387 REMARK 465 PRO A 388 REMARK 465 LEU A 389 REMARK 465 SER A 390 REMARK 465 LYS A 391 REMARK 465 THR A 392 REMARK 465 PRO A 393 REMARK 465 SER A 394 REMARK 465 PRO A 395 REMARK 465 LYS A 396 REMARK 465 ASP A 397 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 238 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 -27.64 -143.77 REMARK 500 ARG A 102 -126.67 48.14 REMARK 500 ARG A 114 8.57 -68.12 REMARK 500 ASN A 115 61.14 -112.73 REMARK 500 GLN A 157 60.41 35.32 REMARK 500 ASP A 346 113.50 -168.12 REMARK 500 ASP A 368 -148.56 63.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1000 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 236 OD2 REMARK 620 2 GLU A 253 OE2 84.0 REMARK 620 3 LEU A 254 O 91.6 103.7 REMARK 620 4 HOH A 600 O 166.0 97.3 101.6 REMARK 620 5 HOH A 637 O 83.8 165.0 85.4 92.5 REMARK 620 6 HOH A 638 O 91.6 95.0 161.3 74.4 76.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FQD RELATED DB: PDB REMARK 900 RELATED ID: 3FQG RELATED DB: PDB REMARK 900 RELATED ID: 3FQJ RELATED DB: PDB DBREF 3FQI A 1 397 UNP O70348 DOM3Z_MOUSE 1 397 SEQADV 3FQI MET A -19 UNP O70348 EXPRESSION TAG SEQADV 3FQI GLY A -18 UNP O70348 EXPRESSION TAG SEQADV 3FQI SER A -17 UNP O70348 EXPRESSION TAG SEQADV 3FQI SER A -16 UNP O70348 EXPRESSION TAG SEQADV 3FQI HIS A -15 UNP O70348 EXPRESSION TAG SEQADV 3FQI HIS A -14 UNP O70348 EXPRESSION TAG SEQADV 3FQI HIS A -13 UNP O70348 EXPRESSION TAG SEQADV 3FQI HIS A -12 UNP O70348 EXPRESSION TAG SEQADV 3FQI HIS A -11 UNP O70348 EXPRESSION TAG SEQADV 3FQI HIS A -10 UNP O70348 EXPRESSION TAG SEQADV 3FQI SER A -9 UNP O70348 EXPRESSION TAG SEQADV 3FQI SER A -8 UNP O70348 EXPRESSION TAG SEQADV 3FQI GLY A -7 UNP O70348 EXPRESSION TAG SEQADV 3FQI LEU A -6 UNP O70348 EXPRESSION TAG SEQADV 3FQI VAL A -5 UNP O70348 EXPRESSION TAG SEQADV 3FQI PRO A -4 UNP O70348 EXPRESSION TAG SEQADV 3FQI ARG A -3 UNP O70348 EXPRESSION TAG SEQADV 3FQI SER A -2 UNP O70348 EXPRESSION TAG SEQADV 3FQI GLY A -1 UNP O70348 EXPRESSION TAG SEQADV 3FQI HIS A 0 UNP O70348 EXPRESSION TAG SEQRES 1 A 417 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 417 LEU VAL PRO ARG SER GLY HIS MET GLU PRO ARG GLY THR SEQRES 3 A 417 LYS ARG LYS ALA GLU LYS THR GLU VAL GLU LYS PRO LEU SEQRES 4 A 417 ASN LYS LEU PRO ARG ALA VAL PRO SER LEU ARG THR GLN SEQRES 5 A 417 PRO SER LEU TYR SER GLY PRO PHE PRO PHE TYR ARG ARG SEQRES 6 A 417 PRO SER GLU LEU GLY CYS PHE SER LEU ASP ALA GLN ARG SEQRES 7 A 417 GLN TYR HIS GLY ASP ALA ARG ALA LEU ARG TYR TYR SER SEQRES 8 A 417 PRO PRO PRO ILE ASN GLY PRO GLY PRO ASP PHE ASP LEU SEQRES 9 A 417 ARG ASP GLY TYR PRO ASP ARG TYR GLN PRO ARG ASP GLU SEQRES 10 A 417 GLU VAL GLN GLU ARG LEU ASP HIS LEU LEU ARG TRP VAL SEQRES 11 A 417 LEU GLU HIS ARG ASN GLN LEU GLU GLY GLY PRO GLY TRP SEQRES 12 A 417 LEU ALA GLY ALA THR VAL THR TRP ARG GLY HIS LEU THR SEQRES 13 A 417 LYS LEU LEU THR THR PRO TYR GLU ARG GLN GLU GLY TRP SEQRES 14 A 417 GLN LEU ALA ALA SER ARG PHE GLN GLY THR LEU TYR LEU SEQRES 15 A 417 SER GLU VAL GLU THR PRO ALA ALA ARG ALA GLN ARG LEU SEQRES 16 A 417 ALA ARG PRO PRO LEU LEU ARG GLU LEU MET TYR MET GLY SEQRES 17 A 417 TYR LYS PHE GLU GLN TYR MET CYS ALA ASP LYS PRO GLY SEQRES 18 A 417 GLY SER PRO ASP PRO SER GLY GLU VAL ASN THR ASN VAL SEQRES 19 A 417 ALA TYR CYS SER VAL LEU ARG SER ARG LEU GLY ASN HIS SEQRES 20 A 417 PRO LEU LEU PHE SER GLY GLU VAL ASP CYS LEU ASN PRO SEQRES 21 A 417 GLN ALA PRO CYS THR GLN PRO PRO SER CYS TYR VAL GLU SEQRES 22 A 417 LEU LYS THR SER LYS GLU MET HIS SER PRO GLY GLN TRP SEQRES 23 A 417 ARG SER PHE TYR ARG HIS LYS LEU LEU LYS TRP TRP ALA SEQRES 24 A 417 GLN SER PHE LEU PRO GLY VAL PRO HIS VAL VAL ALA GLY SEQRES 25 A 417 PHE ARG ASN PRO GLU GLY PHE VAL CYS SER LEU LYS THR SEQRES 26 A 417 PHE PRO THR MET GLU MET PHE GLU ASN VAL ARG ASN ASP SEQRES 27 A 417 ARG GLU GLY TRP ASN PRO SER VAL CYS MET ASN PHE CYS SEQRES 28 A 417 ALA ALA PHE LEU SER PHE ALA GLN SER THR VAL VAL GLN SEQRES 29 A 417 ASP ASP PRO ARG LEU VAL HIS LEU PHE SER TRP GLU PRO SEQRES 30 A 417 GLY GLY PRO VAL THR VAL SER VAL HIS ARG ASP ALA PRO SEQRES 31 A 417 TYR ALA PHE LEU PRO SER TRP TYR VAL GLU THR MET THR SEQRES 32 A 417 GLN ASP LEU PRO PRO LEU SER LYS THR PRO SER PRO LYS SEQRES 33 A 417 ASP HET MG A1000 1 HET EPE A1001 15 HETNAM MG MAGNESIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 2 MG MG 2+ FORMUL 3 EPE C8 H18 N2 O4 S FORMUL 4 HOH *241(H2 O) HELIX 1 1 GLN A 32 SER A 37 5 6 HELIX 2 2 LEU A 103 ARG A 114 1 12 HELIX 3 3 TRP A 123 GLY A 126 5 4 HELIX 4 4 ARG A 132 THR A 141 1 10 HELIX 5 5 PRO A 142 GLU A 144 5 3 HELIX 6 6 THR A 167 ALA A 176 1 10 HELIX 7 7 PRO A 178 MET A 195 1 18 HELIX 8 8 SER A 262 LEU A 283 1 22 HELIX 9 9 MET A 309 VAL A 315 5 7 HELIX 10 10 ASN A 323 VAL A 342 1 20 HELIX 11 11 PRO A 375 ASP A 385 1 11 SHEET 1 A 9 TYR A 60 HIS A 61 0 SHEET 2 A 9 SER A 47 LEU A 54 -1 N SER A 53 O HIS A 61 SHEET 3 A 9 ALA A 215 LEU A 224 -1 O VAL A 219 N GLY A 50 SHEET 4 A 9 HIS A 227 GLU A 234 -1 O LEU A 229 N SER A 222 SHEET 5 A 9 THR A 128 TRP A 131 1 N THR A 128 O LEU A 230 SHEET 6 A 9 THR A 159 VAL A 165 1 O LEU A 160 N VAL A 129 SHEET 7 A 9 TRP A 149 PHE A 156 -1 N ALA A 152 O SER A 163 SHEET 8 A 9 LEU A 349 TRP A 355 -1 O PHE A 353 N LEU A 151 SHEET 9 A 9 THR A 362 ARG A 367 -1 O HIS A 366 N VAL A 350 SHEET 1 B 2 TYR A 69 TYR A 70 0 SHEET 2 B 2 CYS A 196 ALA A 197 -1 O ALA A 197 N TYR A 69 SHEET 1 C 5 PHE A 82 ASP A 83 0 SHEET 2 C 5 PHE A 299 PRO A 307 -1 O VAL A 300 N PHE A 82 SHEET 3 C 5 HIS A 288 ARG A 294 -1 N VAL A 289 O PHE A 306 SHEET 4 C 5 TYR A 251 LYS A 258 1 N GLU A 253 O VAL A 290 SHEET 5 C 5 CYS A 237 LEU A 238 -1 N CYS A 237 O VAL A 252 SHEET 1 D 2 TYR A 92 GLN A 93 0 SHEET 2 D 2 VAL A 210 ASN A 211 1 O VAL A 210 N GLN A 93 LINK OD2 ASP A 236 MG MG A1000 1555 1555 2.33 LINK OE2 GLU A 253 MG MG A1000 1555 1555 2.16 LINK O LEU A 254 MG MG A1000 1555 1555 2.40 LINK O HOH A 600 MG MG A1000 1555 1555 2.40 LINK O HOH A 637 MG MG A1000 1555 1555 2.15 LINK O HOH A 638 MG MG A1000 1555 1555 2.01 CISPEP 1 TYR A 88 PRO A 89 0 -17.55 CISPEP 2 PRO A 247 PRO A 248 0 5.55 CISPEP 3 ALA A 369 PRO A 370 0 1.49 SITE 1 AC1 6 ASP A 236 GLU A 253 LEU A 254 HOH A 600 SITE 2 AC1 6 HOH A 637 HOH A 638 SITE 1 AC2 9 ARG A 95 VAL A 99 GLU A 101 TRP A 131 SITE 2 AC2 9 ARG A 132 GLY A 133 SER A 232 GLY A 233 SITE 3 AC2 9 GLU A 234 CRYST1 45.979 88.379 50.069 90.00 114.20 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021749 0.000000 0.009775 0.00000 SCALE2 0.000000 0.011315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021897 0.00000