HEADER METAL BINDING PROTEIN 07-JAN-09 3FQQ TITLE CRYSTAL STRUCTURE OF A NOVEL DIMERIC FORM OF HCV NS5A DOMAIN I PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 5A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HCV NS5A; COMPND 5 SYNONYM: NS5A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS (ISOLATE CON1); SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 333284; SOURCE 5 STRAIN: HCV GENOTYPE 1B; SUBTYPE CON1; SOURCE 6 GENE: NONSTRUCTURAL PROTEIN NS5A; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS HCV, NS5A, DOMAIN I, PHOSPHOPROTEIN, RNA-BINDING, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.A.LOVE REVDAT 5 06-SEP-23 3FQQ 1 REMARK SEQADV REVDAT 4 24-JUL-19 3FQQ 1 REMARK REVDAT 3 13-JUL-11 3FQQ 1 VERSN REVDAT 2 21-APR-09 3FQQ 1 JRNL REVDAT 1 24-MAR-09 3FQQ 0 JRNL AUTH R.A.LOVE,O.BRODSKY,M.J.HICKEY,P.A.WELLS,C.N.CRONIN JRNL TITL CRYSTAL STRUCTURE OF A NOVEL DIMERIC FORM OF NS5A DOMAIN I JRNL TITL 2 PROTEIN FROM HEPATITIS C VIRUS JRNL REF J.VIROL. V. 83 4395 2009 JRNL REFN ISSN 0022-538X JRNL PMID 19244328 JRNL DOI 10.1128/JVI.02352-08 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 19213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 406 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1270 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2466 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.279 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.630 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2567 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3504 ; 1.237 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 5.650 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;39.391 ;22.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 370 ;16.953 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.611 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1990 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1064 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1701 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 149 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.209 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.123 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1629 ; 0.664 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2591 ; 1.158 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1072 ; 1.540 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 913 ; 2.461 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19703 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53500 REMARK 200 R SYM FOR SHELL (I) : 0.53500 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: MONOMER FROM 1ZH1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG-3350, 0.1 M HEPES PH 7.5, AND REMARK 280 10% (V/V) ISOPROPANOL; 2,6-DIMETHYL-4-HEPTYL-BETA-D- REMARK 280 MALTOPYRANOSIDE (HAMPTON DETERGENT SCREEN 2, NO. 3), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.78833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.57667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 131.57667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.78833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 254 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 31 REMARK 465 PRO A 192 REMARK 465 GLU A 193 REMARK 465 PRO A 194 REMARK 465 ASP A 195 REMARK 465 VAL A 196 REMARK 465 ALA A 197 REMARK 465 VAL A 198 REMARK 465 LEU A 199 REMARK 465 THR A 200 REMARK 465 SER A 201 REMARK 465 MET A 202 REMARK 465 ASP A 203 REMARK 465 ASP A 204 REMARK 465 ASP A 205 REMARK 465 ASP A 206 REMARK 465 LYS A 207 REMARK 465 ALA B 31 REMARK 465 LEU B 32 REMARK 465 PRO B 192 REMARK 465 GLU B 193 REMARK 465 PRO B 194 REMARK 465 ASP B 195 REMARK 465 VAL B 196 REMARK 465 ALA B 197 REMARK 465 VAL B 198 REMARK 465 LEU B 199 REMARK 465 THR B 200 REMARK 465 SER B 201 REMARK 465 MET B 202 REMARK 465 ASP B 203 REMARK 465 ASP B 204 REMARK 465 ASP B 205 REMARK 465 ASP B 206 REMARK 465 LYS B 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 140 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 36 -42.33 77.37 REMARK 500 PRO A 58 -19.20 -49.37 REMARK 500 ASN A 105 39.14 -88.26 REMARK 500 PHE B 36 -48.71 73.75 REMARK 500 ASN B 91 -167.05 -165.76 REMARK 500 ASP B 154 55.54 39.67 REMARK 500 CYS B 190 35.29 -85.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 0BD A 2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 39 SG REMARK 620 2 CYS A 57 SG 115.6 REMARK 620 3 CYS A 59 SG 110.5 104.9 REMARK 620 4 CYS A 80 SG 117.1 101.5 106.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 39 SG REMARK 620 2 CYS B 57 SG 108.9 REMARK 620 3 CYS B 59 SG 102.3 105.4 REMARK 620 4 CYS B 80 SG 118.1 105.5 115.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0BD A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZH1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN BUT IN A DIFFERENT DIMER CONFIGURATION REMARK 900 RELATED ID: 2FQM RELATED DB: PDB DBREF 3FQQ A 33 202 UNP Q9WMX2 POLG_HCVCO 2005 2174 DBREF 3FQQ B 33 202 UNP Q9WMX2 POLG_HCVCO 2005 2174 SEQADV 3FQQ ALA A 31 UNP Q9WMX2 EXPRESSION TAG SEQADV 3FQQ LEU A 32 UNP Q9WMX2 EXPRESSION TAG SEQADV 3FQQ ASP A 203 UNP Q9WMX2 EXPRESSION TAG SEQADV 3FQQ ASP A 204 UNP Q9WMX2 EXPRESSION TAG SEQADV 3FQQ ASP A 205 UNP Q9WMX2 EXPRESSION TAG SEQADV 3FQQ ASP A 206 UNP Q9WMX2 EXPRESSION TAG SEQADV 3FQQ LYS A 207 UNP Q9WMX2 EXPRESSION TAG SEQADV 3FQQ ALA B 31 UNP Q9WMX2 EXPRESSION TAG SEQADV 3FQQ LEU B 32 UNP Q9WMX2 EXPRESSION TAG SEQADV 3FQQ ASP B 203 UNP Q9WMX2 EXPRESSION TAG SEQADV 3FQQ ASP B 204 UNP Q9WMX2 EXPRESSION TAG SEQADV 3FQQ ASP B 205 UNP Q9WMX2 EXPRESSION TAG SEQADV 3FQQ ASP B 206 UNP Q9WMX2 EXPRESSION TAG SEQADV 3FQQ LYS B 207 UNP Q9WMX2 EXPRESSION TAG SEQRES 1 A 177 ALA LEU GLY VAL PRO PHE PHE SER CYS GLN ARG GLY TYR SEQRES 2 A 177 LYS GLY VAL TRP ARG GLY ASP GLY ILE MET GLN THR THR SEQRES 3 A 177 CYS PRO CYS GLY ALA GLN ILE THR GLY HIS VAL LYS ASN SEQRES 4 A 177 GLY SER MET ARG ILE VAL GLY PRO ARG THR CYS SER ASN SEQRES 5 A 177 THR TRP HIS GLY THR PHE PRO ILE ASN ALA TYR THR THR SEQRES 6 A 177 GLY PRO CYS THR PRO SER PRO ALA PRO ASN TYR SER ARG SEQRES 7 A 177 ALA LEU TRP ARG VAL ALA ALA GLU GLU TYR VAL GLU VAL SEQRES 8 A 177 THR ARG VAL GLY ASP PHE HIS TYR VAL THR GLY MET THR SEQRES 9 A 177 THR ASP ASN VAL LYS CYS PRO CYS GLN VAL PRO ALA PRO SEQRES 10 A 177 GLU PHE PHE THR GLU VAL ASP GLY VAL ARG LEU HIS ARG SEQRES 11 A 177 TYR ALA PRO ALA CYS LYS PRO LEU LEU ARG GLU GLU VAL SEQRES 12 A 177 THR PHE LEU VAL GLY LEU ASN GLN TYR LEU VAL GLY SER SEQRES 13 A 177 GLN LEU PRO CYS GLU PRO GLU PRO ASP VAL ALA VAL LEU SEQRES 14 A 177 THR SER MET ASP ASP ASP ASP LYS SEQRES 1 B 177 ALA LEU GLY VAL PRO PHE PHE SER CYS GLN ARG GLY TYR SEQRES 2 B 177 LYS GLY VAL TRP ARG GLY ASP GLY ILE MET GLN THR THR SEQRES 3 B 177 CYS PRO CYS GLY ALA GLN ILE THR GLY HIS VAL LYS ASN SEQRES 4 B 177 GLY SER MET ARG ILE VAL GLY PRO ARG THR CYS SER ASN SEQRES 5 B 177 THR TRP HIS GLY THR PHE PRO ILE ASN ALA TYR THR THR SEQRES 6 B 177 GLY PRO CYS THR PRO SER PRO ALA PRO ASN TYR SER ARG SEQRES 7 B 177 ALA LEU TRP ARG VAL ALA ALA GLU GLU TYR VAL GLU VAL SEQRES 8 B 177 THR ARG VAL GLY ASP PHE HIS TYR VAL THR GLY MET THR SEQRES 9 B 177 THR ASP ASN VAL LYS CYS PRO CYS GLN VAL PRO ALA PRO SEQRES 10 B 177 GLU PHE PHE THR GLU VAL ASP GLY VAL ARG LEU HIS ARG SEQRES 11 B 177 TYR ALA PRO ALA CYS LYS PRO LEU LEU ARG GLU GLU VAL SEQRES 12 B 177 THR PHE LEU VAL GLY LEU ASN GLN TYR LEU VAL GLY SER SEQRES 13 B 177 GLN LEU PRO CYS GLU PRO GLU PRO ASP VAL ALA VAL LEU SEQRES 14 B 177 THR SER MET ASP ASP ASP ASP LYS HET ZN A 901 1 HET GOL A 1 6 HET 0BD A 2 22 HET ZN B 902 1 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM 0BD 3-METHYL-1-(2-METHYLPROPYL)BUTYL 4-O-BETA-L- HETNAM 2 0BD GULOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 0BD 2,6-DIMETHYL-4-HEPTYL 4-O-METHYL-BETA-D-GLUCOPYRANOSIDE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 0BD C21 H40 O11 FORMUL 7 HOH *203(H2 O) HELIX 1 1 CYS A 80 GLY A 86 1 7 HELIX 2 2 ALA A 146 PHE A 150 5 5 HELIX 3 3 CYS B 80 GLY B 86 1 7 HELIX 4 4 ALA B 146 PHE B 150 5 5 SHEET 1 A 2 VAL A 46 ARG A 48 0 SHEET 2 A 2 THR A 99 SER A 101 -1 O THR A 99 N ARG A 48 SHEET 1 B 3 GLY A 51 THR A 56 0 SHEET 2 B 3 GLN A 62 LYS A 68 -1 O GLY A 65 N MET A 53 SHEET 3 B 3 SER A 71 VAL A 75 -1 O ARG A 73 N HIS A 66 SHEET 1 C 5 PHE A 127 MET A 133 0 SHEET 2 C 5 GLU A 117 VAL A 124 -1 N VAL A 124 O PHE A 127 SHEET 3 C 5 ARG A 108 ALA A 114 -1 N TRP A 111 O VAL A 119 SHEET 4 C 5 GLU A 152 VAL A 153 -1 O GLU A 152 N LEU A 110 SHEET 5 C 5 VAL A 156 ARG A 157 -1 O VAL A 156 N VAL A 153 SHEET 1 D 3 VAL A 138 LYS A 139 0 SHEET 2 D 3 THR A 174 VAL A 177 1 O LEU A 176 N VAL A 138 SHEET 3 D 3 ASN A 180 LEU A 183 -1 O TYR A 182 N PHE A 175 SHEET 1 E 2 TRP B 47 ARG B 48 0 SHEET 2 E 2 THR B 99 PRO B 100 -1 O THR B 99 N ARG B 48 SHEET 1 F 3 GLY B 51 THR B 56 0 SHEET 2 F 3 GLN B 62 LYS B 68 -1 O VAL B 67 N GLY B 51 SHEET 3 F 3 SER B 71 VAL B 75 -1 O VAL B 75 N THR B 64 SHEET 1 G 5 PHE B 127 MET B 133 0 SHEET 2 G 5 TYR B 118 VAL B 124 -1 N GLU B 120 O GLY B 132 SHEET 3 G 5 ARG B 108 ARG B 112 -1 N TRP B 111 O VAL B 119 SHEET 4 G 5 GLU B 152 VAL B 153 -1 O GLU B 152 N LEU B 110 SHEET 5 G 5 VAL B 156 ARG B 157 -1 O VAL B 156 N VAL B 153 SHEET 1 H 2 THR B 174 VAL B 177 0 SHEET 2 H 2 ASN B 180 LEU B 183 -1 O ASN B 180 N VAL B 177 LINK SG CYS A 39 ZN ZN A 901 1555 1555 2.18 LINK SG CYS A 57 ZN ZN A 901 1555 1555 2.37 LINK SG CYS A 59 ZN ZN A 901 1555 1555 2.40 LINK SG CYS A 80 ZN ZN A 901 1555 1555 2.40 LINK SG CYS B 39 ZN ZN B 902 1555 1555 2.36 LINK SG CYS B 57 ZN ZN B 902 1555 1555 2.45 LINK SG CYS B 59 ZN ZN B 902 1555 1555 2.29 LINK SG CYS B 80 ZN ZN B 902 1555 1555 2.18 SITE 1 AC1 4 CYS A 39 CYS A 57 CYS A 59 CYS A 80 SITE 1 AC2 7 HIS A 159 ARG A 160 TYR A 161 HIS B 159 SITE 2 AC2 7 ARG B 160 TYR B 161 HOH B 260 SITE 1 AC3 8 GLY A 45 ASN A 69 GLY A 70 MET A 72 SITE 2 AC3 8 GLY A 86 HOH A 246 HOH A 257 HOH A 281 SITE 1 AC4 4 CYS B 39 CYS B 57 CYS B 59 CYS B 80 CRYST1 57.106 57.106 197.365 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017511 0.010110 0.000000 0.00000 SCALE2 0.000000 0.020220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005067 0.00000