data_3FRA # _entry.id 3FRA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FRA pdb_00003fra 10.2210/pdb3fra/pdb RCSB RCSB050944 ? ? WWPDB D_1000050944 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3FRB . unspecified PDB 3FRD . unspecified PDB 3FRE . unspecified PDB 3FRF . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FRA _pdbx_database_status.recvd_initial_deposition_date 2009-01-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Oefner, C.' 1 'Dale-Glenn, E.' 2 # _citation.id primary _citation.title ;Increased hydrophobic interactions of iclaprim with Staphylococcus aureus dihydrofolate reductase are responsible for the increase in affinity and antibacterial activity ; _citation.journal_abbrev J.Antimicrob.Chemother. _citation.journal_volume 63 _citation.page_first 687 _citation.page_last 698 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 0305-7453 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19211577 _citation.pdbx_database_id_DOI 10.1093/jac/dkp024 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Oefner, C.' 1 ? primary 'Bandera, M.' 2 ? primary 'Haldimann, A.' 3 ? primary 'Laue, H.' 4 ? primary 'Schulz, H.' 5 ? primary 'Mukhija, S.' 6 ? primary 'Parisi, S.' 7 ? primary 'Weiss, L.' 8 ? primary 'Lociuro, S.' 9 ? primary 'Dale, G.E.' 10 ? # _cell.entry_id 3FRA _cell.length_a 79.200 _cell.length_b 79.200 _cell.length_c 108.531 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FRA _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dihydrofolate reductase' 18160.736 1 1.5.1.3 F98Y ? ? 2 non-polymer syn 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 743.405 1 ? ? ? ? 3 non-polymer syn '5-{[(2S)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl}pyrimidine-2,4-diamine' 354.403 1 ? ? ? ? 4 water nat water 18.015 103 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name DHFR # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIE DIYQLPGHVFIFGGQTLYEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK ; _entity_poly.pdbx_seq_one_letter_code_can ;TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIE DIYQLPGHVFIFGGQTLYEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 LEU n 1 3 SER n 1 4 ILE n 1 5 LEU n 1 6 VAL n 1 7 ALA n 1 8 HIS n 1 9 ASP n 1 10 LEU n 1 11 GLN n 1 12 ARG n 1 13 VAL n 1 14 ILE n 1 15 GLY n 1 16 PHE n 1 17 GLU n 1 18 ASN n 1 19 GLN n 1 20 LEU n 1 21 PRO n 1 22 TRP n 1 23 HIS n 1 24 LEU n 1 25 PRO n 1 26 ASN n 1 27 ASP n 1 28 LEU n 1 29 LYS n 1 30 HIS n 1 31 VAL n 1 32 LYS n 1 33 LYS n 1 34 LEU n 1 35 SER n 1 36 THR n 1 37 GLY n 1 38 HIS n 1 39 THR n 1 40 LEU n 1 41 VAL n 1 42 MET n 1 43 GLY n 1 44 ARG n 1 45 LYS n 1 46 THR n 1 47 PHE n 1 48 GLU n 1 49 SER n 1 50 ILE n 1 51 GLY n 1 52 LYS n 1 53 PRO n 1 54 LEU n 1 55 PRO n 1 56 ASN n 1 57 ARG n 1 58 ARG n 1 59 ASN n 1 60 VAL n 1 61 VAL n 1 62 LEU n 1 63 THR n 1 64 SER n 1 65 ASP n 1 66 THR n 1 67 SER n 1 68 PHE n 1 69 ASN n 1 70 VAL n 1 71 GLU n 1 72 GLY n 1 73 VAL n 1 74 ASP n 1 75 VAL n 1 76 ILE n 1 77 HIS n 1 78 SER n 1 79 ILE n 1 80 GLU n 1 81 ASP n 1 82 ILE n 1 83 TYR n 1 84 GLN n 1 85 LEU n 1 86 PRO n 1 87 GLY n 1 88 HIS n 1 89 VAL n 1 90 PHE n 1 91 ILE n 1 92 PHE n 1 93 GLY n 1 94 GLY n 1 95 GLN n 1 96 THR n 1 97 LEU n 1 98 TYR n 1 99 GLU n 1 100 GLU n 1 101 MET n 1 102 ILE n 1 103 ASP n 1 104 LYS n 1 105 VAL n 1 106 ASP n 1 107 ASP n 1 108 MET n 1 109 TYR n 1 110 ILE n 1 111 THR n 1 112 VAL n 1 113 ILE n 1 114 GLU n 1 115 GLY n 1 116 LYS n 1 117 PHE n 1 118 ARG n 1 119 GLY n 1 120 ASP n 1 121 THR n 1 122 PHE n 1 123 PHE n 1 124 PRO n 1 125 PRO n 1 126 TYR n 1 127 THR n 1 128 PHE n 1 129 GLU n 1 130 ASP n 1 131 TRP n 1 132 GLU n 1 133 VAL n 1 134 ALA n 1 135 SER n 1 136 SER n 1 137 VAL n 1 138 GLU n 1 139 GLY n 1 140 LYS n 1 141 LEU n 1 142 ASP n 1 143 GLU n 1 144 LYS n 1 145 ASN n 1 146 THR n 1 147 ILE n 1 148 PRO n 1 149 HIS n 1 150 THR n 1 151 PHE n 1 152 LEU n 1 153 HIS n 1 154 LEU n 1 155 ILE n 1 156 ARG n 1 157 LYS n 1 158 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene folA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DYR_STAAU _struct_ref.pdbx_db_accession P0A017 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIE DIYQLPGHVFIFGGQTLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FRA _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 158 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0A017 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 158 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3FRA _struct_ref_seq_dif.mon_id TYR _struct_ref_seq_dif.pdbx_pdb_strand_id X _struct_ref_seq_dif.seq_num 98 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P0A017 _struct_ref_seq_dif.db_mon_id PHE _struct_ref_seq_dif.pdbx_seq_db_seq_num 99 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 98 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 I2H non-polymer . '5-{[(2S)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl}pyrimidine-2,4-diamine' ? 'C19 H22 N4 O3' 354.403 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAP non-polymer . 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' ;2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE ; 'C21 H28 N7 O17 P3' 743.405 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3FRA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_percent_sol 54.53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '25% PEG 3350, 200mM NaCl, 100mM bis-Tris, pH5.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR591' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3FRA _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.35 _reflns.number_obs 8774 _reflns.number_all 8774 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.5 _reflns_shell.percent_possible_all 91.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3FRA _refine.ls_number_reflns_obs 8325 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.35 _refine.ls_percent_reflns_obs 98.60 _refine.ls_R_factor_obs 0.22636 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22283 _refine.ls_R_factor_R_free 0.29408 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 416 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.921 _refine.correlation_coeff_Fo_to_Fc_free 0.823 _refine.B_iso_mean 29.942 _refine.aniso_B[1][1] -0.07 _refine.aniso_B[2][2] -0.07 _refine.aniso_B[3][3] 0.10 _refine.aniso_B[1][2] -0.03 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.405 _refine.pdbx_overall_ESU_R_Free 0.295 _refine.overall_SU_ML 0.215 _refine.overall_SU_B 8.782 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1273 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 74 _refine_hist.number_atoms_solvent 103 _refine_hist.number_atoms_total 1450 _refine_hist.d_res_high 2.35 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.022 ? 1387 'X-RAY DIFFRACTION' ? r_bond_other_d 0.000 0.020 ? 917 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.320 2.015 ? 1891 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.637 3.000 ? 2238 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 9.427 5.000 ? 156 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.851 24.194 ? 62 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.208 15.000 ? 226 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.157 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.039 0.200 ? 209 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.020 ? 1471 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.000 0.020 ? 269 'X-RAY DIFFRACTION' ? r_nbd_refined 0.265 0.200 ? 319 'X-RAY DIFFRACTION' ? r_nbd_other 0.281 0.200 ? 1016 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.202 0.200 ? 661 'X-RAY DIFFRACTION' ? r_nbtor_other 0.091 0.200 ? 761 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.251 0.200 ? 101 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.471 0.200 ? 17 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.379 0.200 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.217 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.590 2.000 ? 1002 'X-RAY DIFFRACTION' ? r_mcbond_other 0.063 2.000 ? 316 'X-RAY DIFFRACTION' ? r_mcangle_it 0.678 3.000 ? 1280 'X-RAY DIFFRACTION' ? r_scbond_it 0.286 2.000 ? 734 'X-RAY DIFFRACTION' ? r_scangle_it 0.447 3.000 ? 610 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.350 _refine_ls_shell.d_res_low 2.475 _refine_ls_shell.number_reflns_R_work 1069 _refine_ls_shell.R_factor_R_work 0.270 _refine_ls_shell.percent_reflns_obs 90.46 _refine_ls_shell.R_factor_R_free 0.323 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FRA _struct.title 'Staphylococcus aureus F98Y DHFR complexed with iclaprim' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FRA _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'DHFR, OXIDOREDUCTASE, NADP, One-carbon metabolism' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 24 ? THR A 36 ? LEU X 24 THR X 36 1 ? 13 HELX_P HELX_P2 2 ARG A 44 ? GLY A 51 ? ARG X 44 GLY X 51 1 ? 8 HELX_P HELX_P3 3 SER A 78 ? LEU A 85 ? SER X 78 LEU X 85 5 ? 8 HELX_P HELX_P4 4 GLY A 94 ? ILE A 102 ? GLY X 94 ILE X 102 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 93 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 93 _struct_mon_prot_cis.auth_asym_id X _struct_mon_prot_cis.pdbx_label_comp_id_2 GLY _struct_mon_prot_cis.pdbx_label_seq_id_2 94 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLY _struct_mon_prot_cis.pdbx_auth_seq_id_2 94 _struct_mon_prot_cis.pdbx_auth_asym_id_2 X _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.20 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 73 ? ILE A 76 ? VAL X 73 ILE X 76 A 2 ARG A 58 ? LEU A 62 ? ARG X 58 LEU X 62 A 3 THR A 39 ? GLY A 43 ? THR X 39 GLY X 43 A 4 VAL A 89 ? ILE A 91 ? VAL X 89 ILE X 91 A 5 LEU A 2 ? ASP A 9 ? LEU X 2 ASP X 9 A 6 ASP A 107 ? ILE A 113 ? ASP X 107 ILE X 113 A 7 HIS A 149 ? ARG A 156 ? HIS X 149 ARG X 156 A 8 TRP A 131 ? GLU A 138 ? TRP X 131 GLU X 138 B 1 VAL A 13 ? GLY A 15 ? VAL X 13 GLY X 15 B 2 THR A 121 ? PHE A 122 ? THR X 121 PHE X 122 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 74 ? O ASP X 74 N VAL A 61 ? N VAL X 61 A 2 3 O ARG A 58 ? O ARG X 58 N LEU A 40 ? N LEU X 40 A 3 4 N THR A 39 ? N THR X 39 O PHE A 90 ? O PHE X 90 A 4 5 O ILE A 91 ? O ILE X 91 N SER A 3 ? N SER X 3 A 5 6 N ILE A 4 ? N ILE X 4 O TYR A 109 ? O TYR X 109 A 6 7 N ILE A 110 ? N ILE X 110 O LEU A 152 ? O LEU X 152 A 7 8 O PHE A 151 ? O PHE X 151 N VAL A 137 ? N VAL X 137 B 1 2 N ILE A 14 ? N ILE X 14 O THR A 121 ? O THR X 121 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X NAP 301 ? 28 'BINDING SITE FOR RESIDUE NAP X 301' AC2 Software X I2H 300 ? 13 'BINDING SITE FOR RESIDUE I2H X 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 28 VAL A 6 ? VAL X 6 . ? 1_555 ? 2 AC1 28 ALA A 7 ? ALA X 7 . ? 1_555 ? 3 AC1 28 ILE A 14 ? ILE X 14 . ? 1_555 ? 4 AC1 28 GLY A 15 ? GLY X 15 . ? 1_555 ? 5 AC1 28 ASN A 18 ? ASN X 18 . ? 1_555 ? 6 AC1 28 GLN A 19 ? GLN X 19 . ? 1_555 ? 7 AC1 28 LEU A 20 ? LEU X 20 . ? 1_555 ? 8 AC1 28 GLY A 43 ? GLY X 43 . ? 1_555 ? 9 AC1 28 ARG A 44 ? ARG X 44 . ? 1_555 ? 10 AC1 28 LYS A 45 ? LYS X 45 . ? 1_555 ? 11 AC1 28 THR A 46 ? THR X 46 . ? 1_555 ? 12 AC1 28 LEU A 62 ? LEU X 62 . ? 1_555 ? 13 AC1 28 THR A 63 ? THR X 63 . ? 1_555 ? 14 AC1 28 SER A 64 ? SER X 64 . ? 1_555 ? 15 AC1 28 PHE A 92 ? PHE X 92 . ? 1_555 ? 16 AC1 28 GLY A 93 ? GLY X 93 . ? 1_555 ? 17 AC1 28 GLY A 94 ? GLY X 94 . ? 1_555 ? 18 AC1 28 GLN A 95 ? GLN X 95 . ? 1_555 ? 19 AC1 28 THR A 96 ? THR X 96 . ? 1_555 ? 20 AC1 28 TYR A 98 ? TYR X 98 . ? 1_555 ? 21 AC1 28 GLU A 100 ? GLU X 100 . ? 1_555 ? 22 AC1 28 THR A 121 ? THR X 121 . ? 1_555 ? 23 AC1 28 HOH D . ? HOH X 177 . ? 1_555 ? 24 AC1 28 HOH D . ? HOH X 178 . ? 1_555 ? 25 AC1 28 HOH D . ? HOH X 179 . ? 1_555 ? 26 AC1 28 HOH D . ? HOH X 180 . ? 1_555 ? 27 AC1 28 HOH D . ? HOH X 258 . ? 1_555 ? 28 AC1 28 I2H C . ? I2H X 300 . ? 1_555 ? 29 AC2 13 LEU A 5 ? LEU X 5 . ? 1_555 ? 30 AC2 13 VAL A 6 ? VAL X 6 . ? 1_555 ? 31 AC2 13 ALA A 7 ? ALA X 7 . ? 1_555 ? 32 AC2 13 ASP A 27 ? ASP X 27 . ? 1_555 ? 33 AC2 13 LEU A 28 ? LEU X 28 . ? 1_555 ? 34 AC2 13 VAL A 31 ? VAL X 31 . ? 1_555 ? 35 AC2 13 SER A 49 ? SER X 49 . ? 1_555 ? 36 AC2 13 PHE A 92 ? PHE X 92 . ? 1_555 ? 37 AC2 13 TYR A 98 ? TYR X 98 . ? 1_555 ? 38 AC2 13 HOH D . ? HOH X 160 . ? 1_555 ? 39 AC2 13 HOH D . ? HOH X 196 . ? 1_555 ? 40 AC2 13 HOH D . ? HOH X 216 . ? 1_555 ? 41 AC2 13 NAP B . ? NAP X 301 . ? 1_555 ? # _database_PDB_matrix.entry_id 3FRA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FRA _atom_sites.fract_transf_matrix[1][1] 0.012626 _atom_sites.fract_transf_matrix[1][2] 0.007290 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014580 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009214 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR X . n A 1 2 LEU 2 2 2 LEU LEU X . n A 1 3 SER 3 3 3 SER SER X . n A 1 4 ILE 4 4 4 ILE ILE X . n A 1 5 LEU 5 5 5 LEU LEU X . n A 1 6 VAL 6 6 6 VAL VAL X . n A 1 7 ALA 7 7 7 ALA ALA X . n A 1 8 HIS 8 8 8 HIS HIS X . n A 1 9 ASP 9 9 9 ASP ASP X . n A 1 10 LEU 10 10 10 LEU LEU X . n A 1 11 GLN 11 11 11 GLN GLN X . n A 1 12 ARG 12 12 12 ARG ARG X . n A 1 13 VAL 13 13 13 VAL VAL X . n A 1 14 ILE 14 14 14 ILE ILE X . n A 1 15 GLY 15 15 15 GLY GLY X . n A 1 16 PHE 16 16 16 PHE PHE X . n A 1 17 GLU 17 17 17 GLU GLU X . n A 1 18 ASN 18 18 18 ASN ASN X . n A 1 19 GLN 19 19 19 GLN GLN X . n A 1 20 LEU 20 20 20 LEU LEU X . n A 1 21 PRO 21 21 21 PRO PRO X . n A 1 22 TRP 22 22 22 TRP TRP X . n A 1 23 HIS 23 23 23 HIS HIS X . n A 1 24 LEU 24 24 24 LEU LEU X . n A 1 25 PRO 25 25 25 PRO PRO X . n A 1 26 ASN 26 26 26 ASN ASN X . n A 1 27 ASP 27 27 27 ASP ASP X . n A 1 28 LEU 28 28 28 LEU LEU X . n A 1 29 LYS 29 29 29 LYS LYS X . n A 1 30 HIS 30 30 30 HIS HIS X . n A 1 31 VAL 31 31 31 VAL VAL X . n A 1 32 LYS 32 32 32 LYS LYS X . n A 1 33 LYS 33 33 33 LYS LYS X . n A 1 34 LEU 34 34 34 LEU LEU X . n A 1 35 SER 35 35 35 SER SER X . n A 1 36 THR 36 36 36 THR THR X . n A 1 37 GLY 37 37 37 GLY GLY X . n A 1 38 HIS 38 38 38 HIS HIS X . n A 1 39 THR 39 39 39 THR THR X . n A 1 40 LEU 40 40 40 LEU LEU X . n A 1 41 VAL 41 41 41 VAL VAL X . n A 1 42 MET 42 42 42 MET MET X . n A 1 43 GLY 43 43 43 GLY GLY X . n A 1 44 ARG 44 44 44 ARG ARG X . n A 1 45 LYS 45 45 45 LYS LYS X . n A 1 46 THR 46 46 46 THR THR X . n A 1 47 PHE 47 47 47 PHE PHE X . n A 1 48 GLU 48 48 48 GLU GLU X . n A 1 49 SER 49 49 49 SER SER X . n A 1 50 ILE 50 50 50 ILE ILE X . n A 1 51 GLY 51 51 51 GLY GLY X . n A 1 52 LYS 52 52 52 LYS LYS X . n A 1 53 PRO 53 53 53 PRO PRO X . n A 1 54 LEU 54 54 54 LEU LEU X . n A 1 55 PRO 55 55 55 PRO PRO X . n A 1 56 ASN 56 56 56 ASN ASN X . n A 1 57 ARG 57 57 57 ARG ARG X . n A 1 58 ARG 58 58 58 ARG ARG X . n A 1 59 ASN 59 59 59 ASN ASN X . n A 1 60 VAL 60 60 60 VAL VAL X . n A 1 61 VAL 61 61 61 VAL VAL X . n A 1 62 LEU 62 62 62 LEU LEU X . n A 1 63 THR 63 63 63 THR THR X . n A 1 64 SER 64 64 64 SER SER X . n A 1 65 ASP 65 65 65 ASP ASP X . n A 1 66 THR 66 66 66 THR THR X . n A 1 67 SER 67 67 67 SER SER X . n A 1 68 PHE 68 68 68 PHE PHE X . n A 1 69 ASN 69 69 69 ASN ASN X . n A 1 70 VAL 70 70 70 VAL VAL X . n A 1 71 GLU 71 71 71 GLU GLU X . n A 1 72 GLY 72 72 72 GLY GLY X . n A 1 73 VAL 73 73 73 VAL VAL X . n A 1 74 ASP 74 74 74 ASP ASP X . n A 1 75 VAL 75 75 75 VAL VAL X . n A 1 76 ILE 76 76 76 ILE ILE X . n A 1 77 HIS 77 77 77 HIS HIS X . n A 1 78 SER 78 78 78 SER SER X . n A 1 79 ILE 79 79 79 ILE ILE X . n A 1 80 GLU 80 80 80 GLU GLU X . n A 1 81 ASP 81 81 81 ASP ASP X . n A 1 82 ILE 82 82 82 ILE ILE X . n A 1 83 TYR 83 83 83 TYR TYR X . n A 1 84 GLN 84 84 84 GLN GLN X . n A 1 85 LEU 85 85 85 LEU LEU X . n A 1 86 PRO 86 86 86 PRO PRO X . n A 1 87 GLY 87 87 87 GLY GLY X . n A 1 88 HIS 88 88 88 HIS HIS X . n A 1 89 VAL 89 89 89 VAL VAL X . n A 1 90 PHE 90 90 90 PHE PHE X . n A 1 91 ILE 91 91 91 ILE ILE X . n A 1 92 PHE 92 92 92 PHE PHE X . n A 1 93 GLY 93 93 93 GLY GLY X . n A 1 94 GLY 94 94 94 GLY GLY X . n A 1 95 GLN 95 95 95 GLN GLN X . n A 1 96 THR 96 96 96 THR THR X . n A 1 97 LEU 97 97 97 LEU LEU X . n A 1 98 TYR 98 98 98 TYR TYR X . n A 1 99 GLU 99 99 99 GLU GLU X . n A 1 100 GLU 100 100 100 GLU GLU X . n A 1 101 MET 101 101 101 MET MET X . n A 1 102 ILE 102 102 102 ILE ILE X . n A 1 103 ASP 103 103 103 ASP ASP X . n A 1 104 LYS 104 104 104 LYS LYS X . n A 1 105 VAL 105 105 105 VAL VAL X . n A 1 106 ASP 106 106 106 ASP ASP X . n A 1 107 ASP 107 107 107 ASP ASP X . n A 1 108 MET 108 108 108 MET MET X . n A 1 109 TYR 109 109 109 TYR TYR X . n A 1 110 ILE 110 110 110 ILE ILE X . n A 1 111 THR 111 111 111 THR THR X . n A 1 112 VAL 112 112 112 VAL VAL X . n A 1 113 ILE 113 113 113 ILE ILE X . n A 1 114 GLU 114 114 114 GLU GLU X . n A 1 115 GLY 115 115 115 GLY GLY X . n A 1 116 LYS 116 116 116 LYS LYS X . n A 1 117 PHE 117 117 117 PHE PHE X . n A 1 118 ARG 118 118 118 ARG ARG X . n A 1 119 GLY 119 119 119 GLY GLY X . n A 1 120 ASP 120 120 120 ASP ASP X . n A 1 121 THR 121 121 121 THR THR X . n A 1 122 PHE 122 122 122 PHE PHE X . n A 1 123 PHE 123 123 123 PHE PHE X . n A 1 124 PRO 124 124 124 PRO PRO X . n A 1 125 PRO 125 125 125 PRO PRO X . n A 1 126 TYR 126 126 126 TYR TYR X . n A 1 127 THR 127 127 127 THR THR X . n A 1 128 PHE 128 128 128 PHE PHE X . n A 1 129 GLU 129 129 129 GLU GLU X . n A 1 130 ASP 130 130 130 ASP ASP X . n A 1 131 TRP 131 131 131 TRP TRP X . n A 1 132 GLU 132 132 132 GLU GLU X . n A 1 133 VAL 133 133 133 VAL VAL X . n A 1 134 ALA 134 134 134 ALA ALA X . n A 1 135 SER 135 135 135 SER SER X . n A 1 136 SER 136 136 136 SER SER X . n A 1 137 VAL 137 137 137 VAL VAL X . n A 1 138 GLU 138 138 138 GLU GLU X . n A 1 139 GLY 139 139 139 GLY GLY X . n A 1 140 LYS 140 140 140 LYS LYS X . n A 1 141 LEU 141 141 141 LEU LEU X . n A 1 142 ASP 142 142 142 ASP ASP X . n A 1 143 GLU 143 143 143 GLU GLU X . n A 1 144 LYS 144 144 144 LYS LYS X . n A 1 145 ASN 145 145 145 ASN ASN X . n A 1 146 THR 146 146 146 THR THR X . n A 1 147 ILE 147 147 147 ILE ILE X . n A 1 148 PRO 148 148 148 PRO PRO X . n A 1 149 HIS 149 149 149 HIS HIS X . n A 1 150 THR 150 150 150 THR THR X . n A 1 151 PHE 151 151 151 PHE PHE X . n A 1 152 LEU 152 152 152 LEU LEU X . n A 1 153 HIS 153 153 153 HIS HIS X . n A 1 154 LEU 154 154 154 LEU LEU X . n A 1 155 ILE 155 155 155 ILE ILE X . n A 1 156 ARG 156 156 156 ARG ARG X . n A 1 157 LYS 157 157 157 LYS LYS X . n A 1 158 LYS 158 158 ? ? ? X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP 1 301 301 NAP NAP X . C 3 I2H 1 300 300 I2H INH X . D 4 HOH 1 159 1 HOH HOH X . D 4 HOH 2 160 2 HOH HOH X . D 4 HOH 3 161 3 HOH HOH X . D 4 HOH 4 162 4 HOH HOH X . D 4 HOH 5 163 5 HOH HOH X . D 4 HOH 6 164 6 HOH HOH X . D 4 HOH 7 165 7 HOH HOH X . D 4 HOH 8 166 8 HOH HOH X . D 4 HOH 9 167 9 HOH HOH X . D 4 HOH 10 168 10 HOH HOH X . D 4 HOH 11 169 11 HOH HOH X . D 4 HOH 12 170 12 HOH HOH X . D 4 HOH 13 171 13 HOH HOH X . D 4 HOH 14 172 14 HOH HOH X . D 4 HOH 15 173 15 HOH HOH X . D 4 HOH 16 174 16 HOH HOH X . D 4 HOH 17 175 17 HOH HOH X . D 4 HOH 18 176 18 HOH HOH X . D 4 HOH 19 177 19 HOH HOH X . D 4 HOH 20 178 20 HOH HOH X . D 4 HOH 21 179 21 HOH HOH X . D 4 HOH 22 180 22 HOH HOH X . D 4 HOH 23 181 23 HOH HOH X . D 4 HOH 24 182 24 HOH HOH X . D 4 HOH 25 183 25 HOH HOH X . D 4 HOH 26 184 26 HOH HOH X . D 4 HOH 27 185 27 HOH HOH X . D 4 HOH 28 186 28 HOH HOH X . D 4 HOH 29 187 30 HOH HOH X . D 4 HOH 30 188 31 HOH HOH X . D 4 HOH 31 189 32 HOH HOH X . D 4 HOH 32 190 33 HOH HOH X . D 4 HOH 33 191 34 HOH HOH X . D 4 HOH 34 192 35 HOH HOH X . D 4 HOH 35 193 36 HOH HOH X . D 4 HOH 36 194 37 HOH HOH X . D 4 HOH 37 195 38 HOH HOH X . D 4 HOH 38 196 39 HOH HOH X . D 4 HOH 39 197 40 HOH HOH X . D 4 HOH 40 198 41 HOH HOH X . D 4 HOH 41 199 42 HOH HOH X . D 4 HOH 42 200 43 HOH HOH X . D 4 HOH 43 201 44 HOH HOH X . D 4 HOH 44 202 45 HOH HOH X . D 4 HOH 45 203 46 HOH HOH X . D 4 HOH 46 204 47 HOH HOH X . D 4 HOH 47 205 48 HOH HOH X . D 4 HOH 48 206 49 HOH HOH X . D 4 HOH 49 207 50 HOH HOH X . D 4 HOH 50 208 51 HOH HOH X . D 4 HOH 51 209 52 HOH HOH X . D 4 HOH 52 210 53 HOH HOH X . D 4 HOH 53 211 54 HOH HOH X . D 4 HOH 54 212 55 HOH HOH X . D 4 HOH 55 213 56 HOH HOH X . D 4 HOH 56 214 58 HOH HOH X . D 4 HOH 57 215 59 HOH HOH X . D 4 HOH 58 216 60 HOH HOH X . D 4 HOH 59 217 61 HOH HOH X . D 4 HOH 60 218 62 HOH HOH X . D 4 HOH 61 219 64 HOH HOH X . D 4 HOH 62 220 65 HOH HOH X . D 4 HOH 63 221 66 HOH HOH X . D 4 HOH 64 222 67 HOH HOH X . D 4 HOH 65 223 68 HOH HOH X . D 4 HOH 66 224 69 HOH HOH X . D 4 HOH 67 225 70 HOH HOH X . D 4 HOH 68 226 71 HOH HOH X . D 4 HOH 69 227 72 HOH HOH X . D 4 HOH 70 228 74 HOH HOH X . D 4 HOH 71 229 75 HOH HOH X . D 4 HOH 72 230 76 HOH HOH X . D 4 HOH 73 231 77 HOH HOH X . D 4 HOH 74 232 78 HOH HOH X . D 4 HOH 75 233 79 HOH HOH X . D 4 HOH 76 234 80 HOH HOH X . D 4 HOH 77 235 81 HOH HOH X . D 4 HOH 78 236 82 HOH HOH X . D 4 HOH 79 237 83 HOH HOH X . D 4 HOH 80 238 84 HOH HOH X . D 4 HOH 81 239 85 HOH HOH X . D 4 HOH 82 240 86 HOH HOH X . D 4 HOH 83 241 87 HOH HOH X . D 4 HOH 84 242 88 HOH HOH X . D 4 HOH 85 243 89 HOH HOH X . D 4 HOH 86 244 90 HOH HOH X . D 4 HOH 87 245 91 HOH HOH X . D 4 HOH 88 246 92 HOH HOH X . D 4 HOH 89 247 93 HOH HOH X . D 4 HOH 90 248 94 HOH HOH X . D 4 HOH 91 249 95 HOH HOH X . D 4 HOH 92 250 96 HOH HOH X . D 4 HOH 93 251 97 HOH HOH X . D 4 HOH 94 252 98 HOH HOH X . D 4 HOH 95 253 99 HOH HOH X . D 4 HOH 96 254 100 HOH HOH X . D 4 HOH 97 255 101 HOH HOH X . D 4 HOH 98 256 102 HOH HOH X . D 4 HOH 99 257 103 HOH HOH X . D 4 HOH 100 258 104 HOH HOH X . D 4 HOH 101 259 105 HOH HOH X . D 4 HOH 102 260 106 HOH HOH X . D 4 HOH 103 261 107 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-04-23 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 X ASP 65 ? ? O X HOH 181 ? ? 1.39 2 1 NH1 X ARG 57 ? ? O X HOH 223 ? ? 1.98 3 1 O X PRO 21 ? ? O X HOH 172 ? ? 2.16 4 1 OH X TYR 109 ? ? O X HOH 195 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE2 _pdbx_validate_symm_contact.auth_asym_id_1 X _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 48 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE2 _pdbx_validate_symm_contact.auth_asym_id_2 X _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 48 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 10_665 _pdbx_validate_symm_contact.dist 1.86 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS X 38 ? ? -128.55 -159.34 2 1 ASN X 69 ? ? -154.48 80.85 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id X _pdbx_unobs_or_zero_occ_residues.auth_comp_id LYS _pdbx_unobs_or_zero_occ_residues.auth_seq_id 158 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id LYS _pdbx_unobs_or_zero_occ_residues.label_seq_id 158 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' NAP 3 '5-{[(2S)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl}pyrimidine-2,4-diamine' I2H 4 water HOH #