HEADER TRANSFERASE 09-JAN-09 3FS8 TITLE CRYSTAL STRUCTURE OF QDTC, THE DTDP-3-AMINO-3,6-DIDEOXY-D-GLUCOSE N- TITLE 2 ACETYL TRANSFERASE FROM THERMOANAEROBACTERIUM THERMOSACCHAROLYTICUM TITLE 3 IN COMPLEX WITH ACETYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: QDTC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTERIUM THERMOSACCHAROLYTICUM; SOURCE 3 ORGANISM_TAXID: 1517; SOURCE 4 STRAIN: E2701-71; SOURCE 5 GENE: QDTC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET31 KEYWDS ACETYLTRANSFERASE, NATURAL PRODUCT, DEOXYSUGAR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.M.HOLDEN,J.B.THODEN REVDAT 3 21-FEB-24 3FS8 1 REMARK SEQADV REVDAT 2 05-MAY-09 3FS8 1 JRNL REVDAT 1 17-FEB-09 3FS8 0 JRNL AUTH J.THODEN,P.COOK,C.SCHAFFER,P.MESSNER,H.HOLDEN JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF QDTC: AN JRNL TITL 2 N-ACETYLTRANSFERASE REQUIRED FOR THE BIOSYNTHESIS OF JRNL TITL 3 DTDP-3-ACETAMIDO-3,6-DIDEOXY-ALPHA-D-GLUCOSE. JRNL REF BIOCHEMISTRY V. 48 2699 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19191736 JRNL DOI 10.1021/BI802313N REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 59147 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5928 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1780 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 59147 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 498 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : NULL ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FS8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI-FILTER REMARK 200 OPTICS : MONTEL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER AXS PLATINUM135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59238 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 5000, 0.01M ACETYL-COA, 0.01M REMARK 280 DTDP, 0.1M HEPES, 2% ETHYLENEGLYCOL, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 67.30000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 33.65000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 58.28351 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 277 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 370 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 372 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 382 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 383 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 399 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 460 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 535 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 262 REMARK 465 ILE A 263 REMARK 465 GLU A 264 REMARK 465 ASN A 265 REMARK 465 LEU A 266 REMARK 465 GLU A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ASN B 260 REMARK 465 ILE B 261 REMARK 465 SER B 262 REMARK 465 ILE B 263 REMARK 465 GLU B 264 REMARK 465 ASN B 265 REMARK 465 LEU B 266 REMARK 465 GLU B 267 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 283 O HOH B 347 2.11 REMARK 500 O HOH B 306 O HOH B 347 2.14 REMARK 500 ND1 HIS B 190 O HOH B 446 2.14 REMARK 500 O HOH B 496 O HOH B 498 2.16 REMARK 500 OE2 GLU A 220 O HOH A 433 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 276 O HOH A 419 2555 2.05 REMARK 500 OE1 GLN A 96 O HOH A 494 3555 2.11 REMARK 500 O HOH B 426 O HOH B 487 2655 2.14 REMARK 500 O HOH A 338 O HOH B 531 2655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 59 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 25 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 50 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 50 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 31 129.91 -39.63 REMARK 500 LEU A 118 -11.08 75.15 REMARK 500 HIS A 134 -157.46 -87.98 REMARK 500 LYS A 142 -7.58 81.58 REMARK 500 ASN A 159 -7.19 -146.81 REMARK 500 PHE A 176 -1.31 64.33 REMARK 500 LYS A 244 12.67 -147.23 REMARK 500 THR A 252 -123.25 -127.99 REMARK 500 ALA B 49 134.58 -39.66 REMARK 500 LEU B 118 -9.26 73.49 REMARK 500 HIS B 134 -154.13 -93.09 REMARK 500 LYS B 142 -4.20 78.01 REMARK 500 ASN B 159 0.46 -153.28 REMARK 500 PHE B 176 -1.95 63.57 REMARK 500 LYS B 244 -5.47 -140.19 REMARK 500 THR B 252 -111.54 -123.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDR A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDR B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FSB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF QDTC, THE DTDP-3-AMINO-3,6-DIDEOXY-D-GLUCOSE N- REMARK 900 ACETYL TRANSFERASE FROM THERMOANAEROBACTERIUM THERMOSACCHAROLYTICUM REMARK 900 IN COMPLEX WITH COA AND DTDP-3-AMINO-QUINOVOSE REMARK 900 RELATED ID: 3FSC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF QDTC, THE DTDP-3-AMINO-3,6-DIDEOXY-D-GLUCOSE N- REMARK 900 ACETYL TRANSFERASE FROM THERMOANAEROBACTERIUM THERMOSACCHAROLYTICUM REMARK 900 IN COMPLEX WITH COA AND DTDP-3-AMINO-FUCOSE DBREF 3FS8 A 1 265 UNP Q6TFC6 Q6TFC6_CLOTS 1 265 DBREF 3FS8 B 1 265 UNP Q6TFC6 Q6TFC6_CLOTS 1 265 SEQADV 3FS8 LEU A 266 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 GLU A 267 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 HIS A 268 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 HIS A 269 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 HIS A 270 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 HIS A 271 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 HIS A 272 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 HIS A 273 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 LEU B 266 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 GLU B 267 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 HIS B 268 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 HIS B 269 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 HIS B 270 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 HIS B 271 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 HIS B 272 UNP Q6TFC6 EXPRESSION TAG SEQADV 3FS8 HIS B 273 UNP Q6TFC6 EXPRESSION TAG SEQRES 1 A 273 MET PRO ASN ASN ILE SER LYS SER ALA ILE ILE LYS GLU SEQRES 2 A 273 GLY VAL ILE ILE GLY GLU ASN VAL THR ILE GLU ASP ASN SEQRES 3 A 273 VAL TYR ILE ASP TYR GLY CYS ILE ILE ARG ASP ASN VAL SEQRES 4 A 273 HIS ILE LYS LYS GLY SER PHE ILE GLY ALA ARG SER ILE SEQRES 5 A 273 LEU GLY GLU TYR LEU VAL ASP PHE TYR ASN ASP ARG ILE SEQRES 6 A 273 ASN LYS LYS HIS PRO LEU ILE ILE GLY GLU ASN ALA LEU SEQRES 7 A 273 ILE ARG THR GLU ASN VAL ILE TYR GLY ASP THR ILE ILE SEQRES 8 A 273 GLY ASP ASN PHE GLN THR GLY HIS LYS VAL THR ILE ARG SEQRES 9 A 273 GLU ASN THR LYS ILE GLY ASN ASN VAL LYS ILE GLY THR SEQRES 10 A 273 LEU SER ASP ILE GLN HIS HIS VAL TYR ILE GLY ASN TYR SEQRES 11 A 273 VAL ASN ILE HIS SER ASN VAL PHE VAL GLY GLU LYS SER SEQRES 12 A 273 ILE ILE LYS ASP PHE VAL TRP LEU PHE PRO HIS VAL VAL SEQRES 13 A 273 LEU THR ASN ASP PRO THR PRO PRO SER ASN GLU LEU LEU SEQRES 14 A 273 GLY VAL THR ILE GLU LEU PHE ALA VAL ILE ALA ALA ARG SEQRES 15 A 273 SER VAL VAL LEU PRO GLY ILE HIS ILE ASN GLU ASP ALA SEQRES 16 A 273 LEU VAL GLY ALA GLY ALA VAL VAL THR LYS ASP VAL PRO SEQRES 17 A 273 LYS GLU THR VAL VAL VAL GLY ASN PRO ALA ARG GLU ILE SEQRES 18 A 273 CYS SER ILE ARG LYS ILE LYS ASN LYS ILE THR GLY GLU SEQRES 19 A 273 GLN VAL TYR PRO TRP ARG TYR THR PHE LYS ARG GLY MET SEQRES 20 A 273 PRO TRP GLU GLU THR ASP TYR ASP THR TRP ILE LYS ASN SEQRES 21 A 273 ILE SER ILE GLU ASN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 273 MET PRO ASN ASN ILE SER LYS SER ALA ILE ILE LYS GLU SEQRES 2 B 273 GLY VAL ILE ILE GLY GLU ASN VAL THR ILE GLU ASP ASN SEQRES 3 B 273 VAL TYR ILE ASP TYR GLY CYS ILE ILE ARG ASP ASN VAL SEQRES 4 B 273 HIS ILE LYS LYS GLY SER PHE ILE GLY ALA ARG SER ILE SEQRES 5 B 273 LEU GLY GLU TYR LEU VAL ASP PHE TYR ASN ASP ARG ILE SEQRES 6 B 273 ASN LYS LYS HIS PRO LEU ILE ILE GLY GLU ASN ALA LEU SEQRES 7 B 273 ILE ARG THR GLU ASN VAL ILE TYR GLY ASP THR ILE ILE SEQRES 8 B 273 GLY ASP ASN PHE GLN THR GLY HIS LYS VAL THR ILE ARG SEQRES 9 B 273 GLU ASN THR LYS ILE GLY ASN ASN VAL LYS ILE GLY THR SEQRES 10 B 273 LEU SER ASP ILE GLN HIS HIS VAL TYR ILE GLY ASN TYR SEQRES 11 B 273 VAL ASN ILE HIS SER ASN VAL PHE VAL GLY GLU LYS SER SEQRES 12 B 273 ILE ILE LYS ASP PHE VAL TRP LEU PHE PRO HIS VAL VAL SEQRES 13 B 273 LEU THR ASN ASP PRO THR PRO PRO SER ASN GLU LEU LEU SEQRES 14 B 273 GLY VAL THR ILE GLU LEU PHE ALA VAL ILE ALA ALA ARG SEQRES 15 B 273 SER VAL VAL LEU PRO GLY ILE HIS ILE ASN GLU ASP ALA SEQRES 16 B 273 LEU VAL GLY ALA GLY ALA VAL VAL THR LYS ASP VAL PRO SEQRES 17 B 273 LYS GLU THR VAL VAL VAL GLY ASN PRO ALA ARG GLU ILE SEQRES 18 B 273 CYS SER ILE ARG LYS ILE LYS ASN LYS ILE THR GLY GLU SEQRES 19 B 273 GLN VAL TYR PRO TRP ARG TYR THR PHE LYS ARG GLY MET SEQRES 20 B 273 PRO TRP GLU GLU THR ASP TYR ASP THR TRP ILE LYS ASN SEQRES 21 B 273 ILE SER ILE GLU ASN LEU GLU HIS HIS HIS HIS HIS HIS HET ACO A 300 51 HET TDR A 301 9 HET ACO B 300 51 HET TDR B 301 9 HETNAM ACO ACETYL COENZYME *A HETNAM TDR THYMINE FORMUL 3 ACO 2(C23 H38 N7 O17 P3 S) FORMUL 4 TDR 2(C5 H6 N2 O2) FORMUL 7 HOH *498(H2 O) HELIX 1 1 ASP A 59 ARG A 64 1 6 HELIX 2 2 ARG A 225 ILE A 227 5 3 HELIX 3 3 PRO A 238 THR A 242 5 5 HELIX 4 4 ASP A 253 ILE A 261 1 9 HELIX 5 5 LEU B 57 ASN B 62 5 6 HELIX 6 6 ARG B 225 ILE B 227 5 3 HELIX 7 7 PRO B 238 THR B 242 5 5 HELIX 8 8 ASP B 253 LYS B 259 1 7 SHEET 1 A10 ASN A 4 ILE A 5 0 SHEET 2 A10 VAL A 21 ILE A 23 1 O VAL A 21 N ASN A 4 SHEET 3 A10 VAL A 39 ILE A 41 1 O ILE A 41 N THR A 22 SHEET 4 A10 LEU A 71 ILE A 73 1 O ILE A 73 N HIS A 40 SHEET 5 A10 ILE A 90 ILE A 91 1 O ILE A 91 N ILE A 72 SHEET 6 A10 LYS A 108 ILE A 109 1 O ILE A 109 N ILE A 90 SHEET 7 A10 TYR A 126 ILE A 127 1 O ILE A 127 N LYS A 108 SHEET 8 A10 ILE A 144 ILE A 145 1 O ILE A 145 N TYR A 126 SHEET 9 A10 THR A 172 ILE A 173 1 O ILE A 173 N ILE A 144 SHEET 10 A10 HIS A 190 ILE A 191 1 O ILE A 191 N THR A 172 SHEET 1 B 4 ILE A 10 ILE A 11 0 SHEET 2 B 4 TYR A 28 ILE A 29 1 O ILE A 29 N ILE A 10 SHEET 3 B 4 PHE A 46 ILE A 47 1 O ILE A 47 N TYR A 28 SHEET 4 B 4 LEU A 78 ILE A 79 1 O ILE A 79 N PHE A 46 SHEET 1 C10 ILE A 16 ILE A 17 0 SHEET 2 C10 ILE A 34 ILE A 35 1 O ILE A 35 N ILE A 16 SHEET 3 C10 ILE A 52 GLU A 55 1 O LEU A 53 N ILE A 34 SHEET 4 C10 VAL A 84 TYR A 86 1 O ILE A 85 N ILE A 52 SHEET 5 C10 THR A 102 ILE A 103 1 O ILE A 103 N VAL A 84 SHEET 6 C10 ASP A 120 ILE A 121 1 O ILE A 121 N THR A 102 SHEET 7 C10 PHE A 138 VAL A 139 1 O VAL A 139 N ASP A 120 SHEET 8 C10 VAL A 156 LEU A 157 1 O LEU A 157 N PHE A 138 SHEET 9 C10 VAL A 184 VAL A 185 1 O VAL A 185 N VAL A 156 SHEET 10 C10 VAL A 202 VAL A 203 1 O VAL A 203 N VAL A 184 SHEET 1 D 8 GLN A 96 THR A 97 0 SHEET 2 D 8 LYS A 114 ILE A 115 1 O ILE A 115 N GLN A 96 SHEET 3 D 8 ASN A 132 ILE A 133 1 O ILE A 133 N LYS A 114 SHEET 4 D 8 TRP A 150 LEU A 151 1 O LEU A 151 N ASN A 132 SHEET 5 D 8 VAL A 178 ILE A 179 1 O ILE A 179 N TRP A 150 SHEET 6 D 8 LEU A 196 VAL A 197 1 O VAL A 197 N VAL A 178 SHEET 7 D 8 THR A 211 VAL A 214 1 O THR A 211 N LEU A 196 SHEET 8 D 8 ARG A 219 SER A 223 -1 O ILE A 221 N VAL A 212 SHEET 1 E10 ASN B 4 ILE B 5 0 SHEET 2 E10 THR B 22 ILE B 23 1 O ILE B 23 N ASN B 4 SHEET 3 E10 VAL B 39 ILE B 41 1 O ILE B 41 N THR B 22 SHEET 4 E10 LEU B 71 ILE B 73 1 O ILE B 73 N HIS B 40 SHEET 5 E10 ILE B 90 ILE B 91 1 O ILE B 91 N ILE B 72 SHEET 6 E10 LYS B 108 ILE B 109 1 O ILE B 109 N ILE B 90 SHEET 7 E10 TYR B 126 ILE B 127 1 O ILE B 127 N LYS B 108 SHEET 8 E10 ILE B 144 ILE B 145 1 O ILE B 145 N TYR B 126 SHEET 9 E10 THR B 172 ILE B 173 1 O ILE B 173 N ILE B 144 SHEET 10 E10 HIS B 190 ILE B 191 1 O ILE B 191 N THR B 172 SHEET 1 F 4 ILE B 10 ILE B 11 0 SHEET 2 F 4 TYR B 28 ILE B 29 1 O ILE B 29 N ILE B 10 SHEET 3 F 4 PHE B 46 ILE B 47 1 O ILE B 47 N TYR B 28 SHEET 4 F 4 LEU B 78 ILE B 79 1 O ILE B 79 N PHE B 46 SHEET 1 G10 ILE B 16 ILE B 17 0 SHEET 2 G10 ILE B 34 ILE B 35 1 O ILE B 35 N ILE B 16 SHEET 3 G10 ILE B 52 GLU B 55 1 O LEU B 53 N ILE B 34 SHEET 4 G10 VAL B 84 TYR B 86 1 O ILE B 85 N GLU B 55 SHEET 5 G10 THR B 102 ILE B 103 1 O ILE B 103 N TYR B 86 SHEET 6 G10 ASP B 120 ILE B 121 1 O ILE B 121 N THR B 102 SHEET 7 G10 PHE B 138 VAL B 139 1 O VAL B 139 N ASP B 120 SHEET 8 G10 VAL B 156 LEU B 157 1 O LEU B 157 N PHE B 138 SHEET 9 G10 VAL B 184 VAL B 185 1 O VAL B 185 N VAL B 156 SHEET 10 G10 VAL B 202 VAL B 203 1 O VAL B 203 N VAL B 184 SHEET 1 H 8 GLN B 96 THR B 97 0 SHEET 2 H 8 LYS B 114 ILE B 115 1 O ILE B 115 N GLN B 96 SHEET 3 H 8 ASN B 132 ILE B 133 1 O ILE B 133 N LYS B 114 SHEET 4 H 8 TRP B 150 LEU B 151 1 O LEU B 151 N ASN B 132 SHEET 5 H 8 VAL B 178 ILE B 179 1 O ILE B 179 N TRP B 150 SHEET 6 H 8 LEU B 196 VAL B 197 1 O VAL B 197 N VAL B 178 SHEET 7 H 8 THR B 211 VAL B 214 1 O THR B 211 N LEU B 196 SHEET 8 H 8 ARG B 219 SER B 223 -1 O ILE B 221 N VAL B 212 CISPEP 1 PRO A 163 PRO A 164 0 0.74 CISPEP 2 ASN A 216 PRO A 217 0 -6.38 CISPEP 3 TYR A 237 PRO A 238 0 0.34 CISPEP 4 PRO B 163 PRO B 164 0 -0.37 CISPEP 5 ASN B 216 PRO B 217 0 -0.05 CISPEP 6 TYR B 237 PRO B 238 0 0.22 SITE 1 AC1 22 PHE A 138 PHE A 152 PRO A 153 ASN A 159 SITE 2 AC1 22 ASP A 160 PRO A 161 PRO A 163 ALA A 180 SITE 3 AC1 22 ALA A 181 LEU A 186 GLY A 198 ALA A 199 SITE 4 AC1 22 THR A 204 LYS A 205 VAL A 214 ASN A 216 SITE 5 AC1 22 PRO A 217 LYS A 230 HOH A 309 HOH A 353 SITE 6 AC1 22 HOH A 390 HOH A 458 SITE 1 AC2 8 ARG A 80 TYR A 86 GLY A 98 ARG A 104 SITE 2 AC2 8 HOH A 318 HOH A 360 HOH A 489 HOH A 495 SITE 1 AC3 26 LYS A 7 PHE B 138 PHE B 152 THR B 158 SITE 2 AC3 26 ASN B 159 ASP B 160 PRO B 161 PRO B 163 SITE 3 AC3 26 ALA B 180 ALA B 181 LEU B 186 GLY B 198 SITE 4 AC3 26 ALA B 199 THR B 204 LYS B 205 VAL B 214 SITE 5 AC3 26 ASN B 216 PRO B 217 ARG B 219 LYS B 230 SITE 6 AC3 26 HOH B 282 HOH B 355 HOH B 411 HOH B 466 SITE 7 AC3 26 HOH B 521 HOH B 527 SITE 1 AC4 6 ARG B 80 TYR B 86 GLY B 98 ARG B 104 SITE 2 AC4 6 HOH B 332 HOH B 495 CRYST1 67.300 67.300 112.400 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014859 0.008579 0.000000 0.00000 SCALE2 0.000000 0.017158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008897 0.00000