data_3FSD # _entry.id 3FSD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FSD pdb_00003fsd 10.2210/pdb3fsd/pdb RCSB RCSB050982 ? ? WWPDB D_1000050982 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 378192 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3FSD _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-01-09 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of NTF2-like protein of unknown function in nutrient uptake (YP_427473.1) from RHODOSPIRILLUM RUBRUM ATCC 11170 at 1.70 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3FSD _cell.length_a 61.018 _cell.length_b 61.018 _cell.length_c 56.442 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FSD _symmetry.Int_Tables_number 94 _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NTF2-like protein of unknown function in nutrient uptake' 14614.410 1 ? ? ? ? 2 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 4 water nat water 18.015 93 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)SNALATLASPADDIAFYEERLRAA(MSE)LTGDLKGLETLLADDLAFVDHTGCVKTKQTHLEPYRAGLLKLSRL DLSDAVVRAAGEDGRVVVVRAVTAGVYDGEAFTETLRFTRIWRRTQGPAGWKLVAGHCSVIL ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSNALATLASPADDIAFYEERLRAAMLTGDLKGLETLLADDLAFVDHTGCVKTKQTHLEPYRAGLLKLSRLDLSDAVVR AAGEDGRVVVVRAVTAGVYDGEAFTETLRFTRIWRRTQGPAGWKLVAGHCSVIL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 378192 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 SER n 1 4 ASN n 1 5 ALA n 1 6 LEU n 1 7 ALA n 1 8 THR n 1 9 LEU n 1 10 ALA n 1 11 SER n 1 12 PRO n 1 13 ALA n 1 14 ASP n 1 15 ASP n 1 16 ILE n 1 17 ALA n 1 18 PHE n 1 19 TYR n 1 20 GLU n 1 21 GLU n 1 22 ARG n 1 23 LEU n 1 24 ARG n 1 25 ALA n 1 26 ALA n 1 27 MSE n 1 28 LEU n 1 29 THR n 1 30 GLY n 1 31 ASP n 1 32 LEU n 1 33 LYS n 1 34 GLY n 1 35 LEU n 1 36 GLU n 1 37 THR n 1 38 LEU n 1 39 LEU n 1 40 ALA n 1 41 ASP n 1 42 ASP n 1 43 LEU n 1 44 ALA n 1 45 PHE n 1 46 VAL n 1 47 ASP n 1 48 HIS n 1 49 THR n 1 50 GLY n 1 51 CYS n 1 52 VAL n 1 53 LYS n 1 54 THR n 1 55 LYS n 1 56 GLN n 1 57 THR n 1 58 HIS n 1 59 LEU n 1 60 GLU n 1 61 PRO n 1 62 TYR n 1 63 ARG n 1 64 ALA n 1 65 GLY n 1 66 LEU n 1 67 LEU n 1 68 LYS n 1 69 LEU n 1 70 SER n 1 71 ARG n 1 72 LEU n 1 73 ASP n 1 74 LEU n 1 75 SER n 1 76 ASP n 1 77 ALA n 1 78 VAL n 1 79 VAL n 1 80 ARG n 1 81 ALA n 1 82 ALA n 1 83 GLY n 1 84 GLU n 1 85 ASP n 1 86 GLY n 1 87 ARG n 1 88 VAL n 1 89 VAL n 1 90 VAL n 1 91 VAL n 1 92 ARG n 1 93 ALA n 1 94 VAL n 1 95 THR n 1 96 ALA n 1 97 GLY n 1 98 VAL n 1 99 TYR n 1 100 ASP n 1 101 GLY n 1 102 GLU n 1 103 ALA n 1 104 PHE n 1 105 THR n 1 106 GLU n 1 107 THR n 1 108 LEU n 1 109 ARG n 1 110 PHE n 1 111 THR n 1 112 ARG n 1 113 ILE n 1 114 TRP n 1 115 ARG n 1 116 ARG n 1 117 THR n 1 118 GLN n 1 119 GLY n 1 120 PRO n 1 121 ALA n 1 122 GLY n 1 123 TRP n 1 124 LYS n 1 125 LEU n 1 126 VAL n 1 127 ALA n 1 128 GLY n 1 129 HIS n 1 130 CYS n 1 131 SER n 1 132 VAL n 1 133 ILE n 1 134 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Rru_A2386, YP_427473.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rhodospirillum rubrum ATCC 11170' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269796 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 11170 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2RRQ9_RHORT _struct_ref.pdbx_db_accession Q2RRQ9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSNALATLASPADDIAFYEERLRAAMLTGDLKGLETLLADDLAFVDHTGCVKTKQTHLEPYRAGLLKLSRLDLSDAVVRA AGEDGRVVVVRAVTAGVYDGEAFTETLRFTRIWRRTQGPAGWKLVAGHCSVIL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FSD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 134 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2RRQ9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 133 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 133 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3FSD _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q2RRQ9 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3FSD # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.80 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 31.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;20.0% polyethylene glycol 3350, 0.2M magnesium chloride, ADDITIVE: 0.001M uridine 5'-monophosphate (UMP), NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K. ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-11-13 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97867 1.0 2 0.97776 1.0 3 0.91162 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.97867,0.97776,0.91162 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3FSD _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 27.287 _reflns.number_obs 12272 _reflns.pdbx_Rmerge_I_obs 0.095 _reflns.pdbx_netI_over_sigmaI 15.8 _reflns.pdbx_Rsym_value 0.095 _reflns.pdbx_redundancy 9.400 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 20.479 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.70 1.74 ? 8443 ? 0.755 2.4 0.755 ? 9.60 ? 884 100.0 1 1 1.74 1.79 ? 8211 ? 0.600 3.0 0.600 ? 9.50 ? 860 100.00 2 1 1.79 1.84 ? 8145 ? 0.453 4.1 0.453 ? 9.50 ? 854 100.00 3 1 1.84 1.90 ? 7652 ? 0.373 5.1 0.373 ? 9.60 ? 801 100.00 4 1 1.90 1.96 ? 7607 ? 0.284 6.8 0.284 ? 9.60 ? 794 100.00 5 1 1.96 2.03 ? 7476 ? 0.240 8.1 0.240 ? 9.50 ? 785 100.00 6 1 2.03 2.11 ? 7079 ? 0.191 10.2 0.191 ? 9.50 ? 743 100.00 7 1 2.11 2.19 ? 6747 ? 0.163 12.6 0.163 ? 9.50 ? 707 100.00 8 1 2.19 2.29 ? 6496 ? 0.139 15.1 0.139 ? 9.50 ? 686 100.00 9 1 2.29 2.40 ? 6247 ? 0.139 16.5 0.139 ? 9.50 ? 657 100.00 10 1 2.40 2.53 ? 6053 ? 0.133 18.2 0.133 ? 9.40 ? 642 100.00 11 1 2.53 2.69 ? 5668 ? 0.123 20.8 0.123 ? 9.30 ? 607 100.00 12 1 2.69 2.87 ? 5247 ? 0.107 25.4 0.107 ? 9.30 ? 562 100.00 13 1 2.87 3.10 ? 4928 ? 0.085 28.9 0.085 ? 9.30 ? 532 100.00 14 1 3.10 3.40 ? 4568 ? 0.069 34.0 0.069 ? 9.30 ? 492 100.00 15 1 3.40 3.80 ? 4217 ? 0.060 36.5 0.060 ? 9.30 ? 455 100.00 16 1 3.80 4.39 ? 3666 ? 0.056 40.0 0.056 ? 9.00 ? 406 100.00 17 1 4.39 5.38 ? 3101 ? 0.055 39.4 0.055 ? 9.00 ? 345 100.00 18 1 5.38 7.60 ? 2409 ? 0.055 33.5 0.055 ? 8.40 ? 286 100.00 19 1 7.60 27.29 ? 1286 ? 0.051 34.6 0.051 ? 7.40 ? 174 98.20 20 1 # _refine.entry_id 3FSD _refine.ls_d_res_high 1.700 _refine.ls_d_res_low 27.287 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.950 _refine.ls_number_reflns_obs 12236 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3.AN UNIDENTIFIED LIGAND (UNL) HAS BEEN MODELED AT THE PUTATIVE ACTIVE SITE. 4.1,2-ETHANEDIOL (EDO) MOLECULES FROM THE CRYOPROTECTION CONDITION HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. 5.GLY 118 IN CHAIN A HAS BEEN MODELED INTO POOR ELECTRON DENSITY. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.175 _refine.ls_R_factor_R_work 0.172 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.221 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 585 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 24.583 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.230 _refine.aniso_B[2][2] -1.230 _refine.aniso_B[3][3] 2.450 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.112 _refine.pdbx_overall_ESU_R_Free 0.115 _refine.overall_SU_ML 0.078 _refine.overall_SU_B 2.352 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 64.65 _refine.B_iso_min 5.89 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 927 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 1038 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 27.287 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 966 0.017 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 652 0.002 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1312 1.684 1.971 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 1574 0.984 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 126 5.694 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 40 29.878 21.500 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 158 12.759 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 11 14.510 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 156 0.094 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1087 0.006 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 214 0.001 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 141 0.189 0.201 ? ? r_nbd_other 'X-RAY DIFFRACTION' 680 0.214 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 447 0.173 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 578 0.090 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 59 0.218 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 10 0.166 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 53 0.309 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 15 0.180 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 651 2.556 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 254 0.633 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 972 3.556 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 387 5.513 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 338 7.041 11.000 ? ? # _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 849 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.234 _refine_ls_shell.R_factor_R_free 0.280 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 884 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FSD _struct.title ;Crystal structure of NTF2-like protein of unknown function in nutrient uptake (YP_427473.1) from RHODOSPIRILLUM RUBRUM ATCC 11170 at 1.70 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_427473.1, NTF2-like protein of unknown function in nutrient uptake, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function ; _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.entry_id 3FSD # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ;CRYSTAL PACKING ANALYSIS SUGGESTS THAT A DIMER IS THE STABLE OLIGOMERIC FORM IN SOLUTION. THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION IS SUPPORTED BY ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY AND STATIC LIGHT SCATTERING. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 15 ? GLY A 30 ? ASP A 14 GLY A 29 1 ? 16 HELX_P HELX_P2 2 ASP A 31 ? LEU A 38 ? ASP A 30 LEU A 37 1 ? 8 HELX_P HELX_P3 3 THR A 54 ? ALA A 64 ? THR A 53 ALA A 63 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 26 C ? ? ? 1_555 A MSE 27 N ? ? A ALA 25 A MSE 26 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A MSE 27 C ? ? ? 1_555 A LEU 28 N ? ? A MSE 26 A LEU 27 1_555 ? ? ? ? ? ? ? 1.322 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 52 ? LYS A 53 ? VAL A 51 LYS A 52 A 2 LEU A 39 ? VAL A 46 ? LEU A 38 VAL A 45 A 3 GLY A 122 ? VAL A 132 ? GLY A 121 VAL A 131 A 4 GLU A 102 ? THR A 117 ? GLU A 101 THR A 116 A 5 GLY A 86 ? TYR A 99 ? GLY A 85 TYR A 98 A 6 LEU A 67 ? ALA A 81 ? LEU A 66 ALA A 80 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 53 ? O LYS A 52 N PHE A 45 ? N PHE A 44 A 2 3 N VAL A 46 ? N VAL A 45 O GLY A 128 ? O GLY A 127 A 3 4 O ALA A 127 ? O ALA A 126 N ILE A 113 ? N ILE A 112 A 4 5 O TRP A 114 ? O TRP A 113 N ARG A 87 ? N ARG A 86 A 5 6 O VAL A 88 ? O VAL A 87 N ARG A 80 ? N ARG A 79 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A UNL 134 ? 6 'BINDING SITE FOR RESIDUE UNL A 134' AC2 Software A EDO 135 ? 4 'BINDING SITE FOR RESIDUE EDO A 135' AC3 Software A EDO 136 ? 4 'BINDING SITE FOR RESIDUE EDO A 136' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 47 ? ASP A 46 . ? 1_555 ? 2 AC1 6 HIS A 48 ? HIS A 47 . ? 1_555 ? 3 AC1 6 GLU A 106 ? GLU A 105 . ? 1_555 ? 4 AC1 6 CYS A 130 ? CYS A 129 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH A 175 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 217 . ? 1_555 ? 7 AC2 4 GLU A 20 ? GLU A 19 . ? 1_555 ? 8 AC2 4 VAL A 79 ? VAL A 78 . ? 1_555 ? 9 AC2 4 HOH E . ? HOH A 168 . ? 1_555 ? 10 AC2 4 HOH E . ? HOH A 170 . ? 1_555 ? 11 AC3 4 LEU A 43 ? LEU A 42 . ? 7_555 ? 12 AC3 4 ALA A 44 ? ALA A 43 . ? 7_555 ? 13 AC3 4 LYS A 53 ? LYS A 52 . ? 7_555 ? 14 AC3 4 ARG A 80 ? ARG A 79 . ? 1_555 ? # _atom_sites.entry_id 3FSD _atom_sites.fract_transf_matrix[1][1] 0.016389 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016389 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017717 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 SER 3 2 ? ? ? A . n A 1 4 ASN 4 3 ? ? ? A . n A 1 5 ALA 5 4 ? ? ? A . n A 1 6 LEU 6 5 ? ? ? A . n A 1 7 ALA 7 6 ? ? ? A . n A 1 8 THR 8 7 ? ? ? A . n A 1 9 LEU 9 8 ? ? ? A . n A 1 10 ALA 10 9 ? ? ? A . n A 1 11 SER 11 10 ? ? ? A . n A 1 12 PRO 12 11 ? ? ? A . n A 1 13 ALA 13 12 ? ? ? A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 ASP 15 14 14 ASP ASP A . n A 1 16 ILE 16 15 15 ILE ILE A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 PHE 18 17 17 PHE PHE A . n A 1 19 TYR 19 18 18 TYR TYR A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 ARG 22 21 21 ARG ARG A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 ARG 24 23 23 ARG ARG A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 MSE 27 26 26 MSE MSE A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 THR 29 28 28 THR THR A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 LYS 33 32 32 LYS LYS A . n A 1 34 GLY 34 33 33 GLY GLY A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 GLU 36 35 35 GLU GLU A . n A 1 37 THR 37 36 36 THR THR A . n A 1 38 LEU 38 37 37 LEU LEU A . n A 1 39 LEU 39 38 38 LEU LEU A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 ASP 41 40 40 ASP ASP A . n A 1 42 ASP 42 41 41 ASP ASP A . n A 1 43 LEU 43 42 42 LEU LEU A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 PHE 45 44 44 PHE PHE A . n A 1 46 VAL 46 45 45 VAL VAL A . n A 1 47 ASP 47 46 46 ASP ASP A . n A 1 48 HIS 48 47 47 HIS HIS A . n A 1 49 THR 49 48 48 THR THR A . n A 1 50 GLY 50 49 49 GLY GLY A . n A 1 51 CYS 51 50 50 CYS CYS A . n A 1 52 VAL 52 51 51 VAL VAL A . n A 1 53 LYS 53 52 52 LYS LYS A . n A 1 54 THR 54 53 53 THR THR A . n A 1 55 LYS 55 54 54 LYS LYS A . n A 1 56 GLN 56 55 55 GLN GLN A . n A 1 57 THR 57 56 56 THR THR A . n A 1 58 HIS 58 57 57 HIS HIS A . n A 1 59 LEU 59 58 58 LEU LEU A . n A 1 60 GLU 60 59 59 GLU GLU A . n A 1 61 PRO 61 60 60 PRO PRO A . n A 1 62 TYR 62 61 61 TYR TYR A . n A 1 63 ARG 63 62 62 ARG ARG A . n A 1 64 ALA 64 63 63 ALA ALA A . n A 1 65 GLY 65 64 64 GLY GLY A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 LEU 67 66 66 LEU LEU A . n A 1 68 LYS 68 67 67 LYS LYS A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 SER 70 69 69 SER SER A . n A 1 71 ARG 71 70 70 ARG ARG A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 ASP 73 72 72 ASP ASP A . n A 1 74 LEU 74 73 73 LEU LEU A . n A 1 75 SER 75 74 74 SER SER A . n A 1 76 ASP 76 75 75 ASP ASP A . n A 1 77 ALA 77 76 76 ALA ALA A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 VAL 79 78 78 VAL VAL A . n A 1 80 ARG 80 79 79 ARG ARG A . n A 1 81 ALA 81 80 80 ALA ALA A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 GLY 83 82 82 GLY GLY A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 ASP 85 84 84 ASP ASP A . n A 1 86 GLY 86 85 85 GLY GLY A . n A 1 87 ARG 87 86 86 ARG ARG A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 VAL 89 88 88 VAL VAL A . n A 1 90 VAL 90 89 89 VAL VAL A . n A 1 91 VAL 91 90 90 VAL VAL A . n A 1 92 ARG 92 91 91 ARG ARG A . n A 1 93 ALA 93 92 92 ALA ALA A . n A 1 94 VAL 94 93 93 VAL VAL A . n A 1 95 THR 95 94 94 THR THR A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 GLY 97 96 96 GLY GLY A . n A 1 98 VAL 98 97 97 VAL VAL A . n A 1 99 TYR 99 98 98 TYR TYR A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 GLU 102 101 101 GLU GLU A . n A 1 103 ALA 103 102 102 ALA ALA A . n A 1 104 PHE 104 103 103 PHE PHE A . n A 1 105 THR 105 104 104 THR THR A . n A 1 106 GLU 106 105 105 GLU GLU A . n A 1 107 THR 107 106 106 THR THR A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 ARG 109 108 108 ARG ARG A . n A 1 110 PHE 110 109 109 PHE PHE A . n A 1 111 THR 111 110 110 THR THR A . n A 1 112 ARG 112 111 111 ARG ARG A . n A 1 113 ILE 113 112 112 ILE ILE A . n A 1 114 TRP 114 113 113 TRP TRP A . n A 1 115 ARG 115 114 114 ARG ARG A . n A 1 116 ARG 116 115 115 ARG ARG A . n A 1 117 THR 117 116 116 THR THR A . n A 1 118 GLN 118 117 117 GLN GLN A . n A 1 119 GLY 119 118 118 GLY GLY A . n A 1 120 PRO 120 119 119 PRO PRO A . n A 1 121 ALA 121 120 120 ALA ALA A . n A 1 122 GLY 122 121 121 GLY GLY A . n A 1 123 TRP 123 122 122 TRP TRP A . n A 1 124 LYS 124 123 123 LYS LYS A . n A 1 125 LEU 125 124 124 LEU LEU A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 ALA 127 126 126 ALA ALA A . n A 1 128 GLY 128 127 127 GLY GLY A . n A 1 129 HIS 129 128 128 HIS HIS A . n A 1 130 CYS 130 129 129 CYS CYS A . n A 1 131 SER 131 130 130 SER SER A . n A 1 132 VAL 132 131 131 VAL VAL A . n A 1 133 ILE 133 132 132 ILE ILE A . n A 1 134 LEU 134 133 133 LEU LEU A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL 1 134 1 UNL UNL A . C 3 EDO 1 135 2 EDO EDO A . D 3 EDO 1 136 3 EDO EDO A . E 4 HOH 1 137 4 HOH HOH A . E 4 HOH 2 138 5 HOH HOH A . E 4 HOH 3 139 6 HOH HOH A . E 4 HOH 4 140 7 HOH HOH A . E 4 HOH 5 141 8 HOH HOH A . E 4 HOH 6 142 9 HOH HOH A . E 4 HOH 7 143 10 HOH HOH A . E 4 HOH 8 144 11 HOH HOH A . E 4 HOH 9 145 12 HOH HOH A . E 4 HOH 10 146 13 HOH HOH A . E 4 HOH 11 147 14 HOH HOH A . E 4 HOH 12 148 15 HOH HOH A . E 4 HOH 13 149 16 HOH HOH A . E 4 HOH 14 150 17 HOH HOH A . E 4 HOH 15 151 18 HOH HOH A . E 4 HOH 16 152 19 HOH HOH A . E 4 HOH 17 153 20 HOH HOH A . E 4 HOH 18 154 21 HOH HOH A . E 4 HOH 19 155 22 HOH HOH A . E 4 HOH 20 156 23 HOH HOH A . E 4 HOH 21 157 24 HOH HOH A . E 4 HOH 22 158 25 HOH HOH A . E 4 HOH 23 159 26 HOH HOH A . E 4 HOH 24 160 27 HOH HOH A . E 4 HOH 25 161 28 HOH HOH A . E 4 HOH 26 162 29 HOH HOH A . E 4 HOH 27 163 30 HOH HOH A . E 4 HOH 28 164 31 HOH HOH A . E 4 HOH 29 165 32 HOH HOH A . E 4 HOH 30 166 33 HOH HOH A . E 4 HOH 31 167 34 HOH HOH A . E 4 HOH 32 168 35 HOH HOH A . E 4 HOH 33 169 36 HOH HOH A . E 4 HOH 34 170 37 HOH HOH A . E 4 HOH 35 171 38 HOH HOH A . E 4 HOH 36 172 39 HOH HOH A . E 4 HOH 37 173 40 HOH HOH A . E 4 HOH 38 174 41 HOH HOH A . E 4 HOH 39 175 42 HOH HOH A . E 4 HOH 40 176 43 HOH HOH A . E 4 HOH 41 177 44 HOH HOH A . E 4 HOH 42 178 45 HOH HOH A . E 4 HOH 43 179 46 HOH HOH A . E 4 HOH 44 180 47 HOH HOH A . E 4 HOH 45 181 48 HOH HOH A . E 4 HOH 46 182 49 HOH HOH A . E 4 HOH 47 183 50 HOH HOH A . E 4 HOH 48 184 51 HOH HOH A . E 4 HOH 49 185 52 HOH HOH A . E 4 HOH 50 186 53 HOH HOH A . E 4 HOH 51 187 54 HOH HOH A . E 4 HOH 52 188 55 HOH HOH A . E 4 HOH 53 189 56 HOH HOH A . E 4 HOH 54 190 57 HOH HOH A . E 4 HOH 55 191 58 HOH HOH A . E 4 HOH 56 192 59 HOH HOH A . E 4 HOH 57 193 60 HOH HOH A . E 4 HOH 58 194 61 HOH HOH A . E 4 HOH 59 195 62 HOH HOH A . E 4 HOH 60 196 63 HOH HOH A . E 4 HOH 61 197 64 HOH HOH A . E 4 HOH 62 198 65 HOH HOH A . E 4 HOH 63 199 66 HOH HOH A . E 4 HOH 64 200 67 HOH HOH A . E 4 HOH 65 201 68 HOH HOH A . E 4 HOH 66 202 69 HOH HOH A . E 4 HOH 67 203 70 HOH HOH A . E 4 HOH 68 204 71 HOH HOH A . E 4 HOH 69 205 72 HOH HOH A . E 4 HOH 70 206 73 HOH HOH A . E 4 HOH 71 207 74 HOH HOH A . E 4 HOH 72 208 75 HOH HOH A . E 4 HOH 73 209 76 HOH HOH A . E 4 HOH 74 210 77 HOH HOH A . E 4 HOH 75 211 78 HOH HOH A . E 4 HOH 76 212 79 HOH HOH A . E 4 HOH 77 213 80 HOH HOH A . E 4 HOH 78 214 81 HOH HOH A . E 4 HOH 79 215 82 HOH HOH A . E 4 HOH 80 216 83 HOH HOH A . E 4 HOH 81 217 84 HOH HOH A . E 4 HOH 82 218 85 HOH HOH A . E 4 HOH 83 219 86 HOH HOH A . E 4 HOH 84 220 87 HOH HOH A . E 4 HOH 85 221 88 HOH HOH A . E 4 HOH 86 222 89 HOH HOH A . E 4 HOH 87 223 90 HOH HOH A . E 4 HOH 88 224 91 HOH HOH A . E 4 HOH 89 225 92 HOH HOH A . E 4 HOH 90 226 93 HOH HOH A . E 4 HOH 91 227 94 HOH HOH A . E 4 HOH 92 228 95 HOH HOH A . E 4 HOH 93 229 96 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 27 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 26 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4090 ? 1 MORE -4 ? 1 'SSA (A^2)' 10640 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 218 ? E HOH . 2 1 A HOH 219 ? E HOH . 3 1 A HOH 220 ? E HOH . 4 1 A HOH 222 ? E HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2016-02-17 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2017-10-25 6 'Structure model' 1 5 2019-07-24 7 'Structure model' 1 6 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Author supporting evidence' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Refinement description' 10 7 'Structure model' 'Database references' 11 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' reflns_shell 2 4 'Structure model' software 3 5 'Structure model' pdbx_struct_assembly_auth_evidence 4 6 'Structure model' software 5 6 'Structure model' struct_conn 6 7 'Structure model' database_2 7 7 'Structure model' struct_ref_seq_dif 8 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_reflns_shell.percent_possible_all' 2 4 'Structure model' '_software.classification' 3 4 'Structure model' '_software.name' 4 6 'Structure model' '_software.classification' 5 6 'Structure model' '_software.contact_author' 6 6 'Structure model' '_software.contact_author_email' 7 6 'Structure model' '_software.language' 8 6 'Structure model' '_software.location' 9 6 'Structure model' '_software.name' 10 6 'Structure model' '_software.type' 11 6 'Structure model' '_software.version' 12 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 7 'Structure model' '_database_2.pdbx_DOI' 14 7 'Structure model' '_database_2.pdbx_database_accession' 15 7 'Structure model' '_struct_ref_seq_dif.details' 16 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3FSD _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 71 ? ? -160.17 83.00 2 1 GLN A 117 ? ? -115.58 -166.73 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 13 ? CG ? A ASP 14 CG 2 1 Y 1 A ASP 13 ? OD1 ? A ASP 14 OD1 3 1 Y 1 A ASP 13 ? OD2 ? A ASP 14 OD2 4 1 Y 1 A LYS 32 ? CG ? A LYS 33 CG 5 1 Y 1 A LYS 32 ? CD ? A LYS 33 CD 6 1 Y 1 A LYS 32 ? CE ? A LYS 33 CE 7 1 Y 1 A LYS 32 ? NZ ? A LYS 33 NZ 8 1 Y 1 A GLN 117 ? CG ? A GLN 118 CG 9 1 Y 1 A GLN 117 ? CD ? A GLN 118 CD 10 1 Y 1 A GLN 117 ? OE1 ? A GLN 118 OE1 11 1 Y 1 A GLN 117 ? NE2 ? A GLN 118 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A SER 2 ? A SER 3 4 1 Y 1 A ASN 3 ? A ASN 4 5 1 Y 1 A ALA 4 ? A ALA 5 6 1 Y 1 A LEU 5 ? A LEU 6 7 1 Y 1 A ALA 6 ? A ALA 7 8 1 Y 1 A THR 7 ? A THR 8 9 1 Y 1 A LEU 8 ? A LEU 9 10 1 Y 1 A ALA 9 ? A ALA 10 11 1 Y 1 A SER 10 ? A SER 11 12 1 Y 1 A PRO 11 ? A PRO 12 13 1 Y 1 A ALA 12 ? A ALA 13 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN LIGAND' UNL 3 1,2-ETHANEDIOL EDO 4 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #