HEADER HYDROLASE 09-JAN-09 3FSE TITLE CRYSTAL STRUCTURE OF A TWO-DOMAIN PROTEIN CONTAINING DJ-1/THIJ/PFPI- TITLE 2 LIKE AND FERRITIN-LIKE DOMAINS (AVA_4496) FROM ANABAENA VARIABILIS TITLE 3 ATCC 29413 AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO-DOMAIN PROTEIN CONTAINING DJ-1/THIJ/PFPI-LIKE AND COMPND 3 FERRITIN-LIKE DOMAINS; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANABAENA VARIABILIS ATCC 29413; SOURCE 3 ORGANISM_TAXID: 240292; SOURCE 4 ATCC: 29413; SOURCE 5 GENE: AVA_4496, YP_324989.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3FSE 1 REMARK SEQADV REVDAT 5 24-JUL-19 3FSE 1 REMARK LINK REVDAT 4 25-OCT-17 3FSE 1 REMARK REVDAT 3 13-JUL-11 3FSE 1 VERSN REVDAT 2 23-MAR-11 3FSE 1 HEADER TITLE KEYWDS REVDAT 1 03-FEB-09 3FSE 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF TWO-DOMAIN PROTEIN CONTAINING JRNL TITL 2 DJ-1/THIJ/PFPI-LIKE AND FERRITIN-LIKE DOMAINS. (YP_324989.1) JRNL TITL 3 FROM ANABAENA VARIABILIS ATCC 29413 AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 52664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2676 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3632 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5183 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 456 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.944 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5388 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3655 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7314 ; 1.605 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8958 ; 1.359 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 720 ; 3.762 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;34.789 ;24.609 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 947 ;11.871 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;15.531 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 841 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6076 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1039 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1065 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3735 ; 0.140 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2672 ; 0.152 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2703 ; 0.073 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 380 ; 0.105 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.112 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 60 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.082 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3989 ; 1.448 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1428 ; 0.234 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5530 ; 2.050 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2118 ; 3.797 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1765 ; 4.893 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 274 REMARK 3 RESIDUE RANGE : A 290 A 361 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4400 23.9270 33.5860 REMARK 3 T TENSOR REMARK 3 T11: -0.0916 T22: -0.0920 REMARK 3 T33: -0.1194 T12: 0.0100 REMARK 3 T13: -0.0127 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.7324 L22: 0.2976 REMARK 3 L33: 0.8420 L12: 0.0136 REMARK 3 L13: -0.1348 L23: -0.0119 REMARK 3 S TENSOR REMARK 3 S11: -0.0498 S12: -0.0151 S13: 0.0005 REMARK 3 S21: -0.0433 S22: -0.0059 S23: -0.0941 REMARK 3 S31: -0.0092 S32: 0.1439 S33: 0.0557 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 180 REMARK 3 RESIDUE RANGE : B 184 B 360 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4180 23.7110 29.5130 REMARK 3 T TENSOR REMARK 3 T11: -0.0851 T22: -0.1134 REMARK 3 T33: -0.1735 T12: 0.0147 REMARK 3 T13: -0.0388 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.2051 L22: 0.6247 REMARK 3 L33: 0.5662 L12: -0.1609 REMARK 3 L13: -0.1290 L23: -0.2528 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: -0.0131 S13: -0.0514 REMARK 3 S21: -0.0208 S22: 0.0234 S23: 0.0377 REMARK 3 S31: -0.0244 S32: -0.0913 S33: -0.0454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. RESIDUE REMARK 3 CYS 111 SEEMS PARTIALLY OXIDIZED AND COULD BE FUNCTIONALLY REMARK 3 RELEVANT. REMARK 4 REMARK 4 3FSE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.67 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97953 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52666 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.975 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE AND R MERGE VALUES STATISTICS REPORTED REMARK 200 HERE ARE BASED ON TREATING FRIEDEL PAIRS AS SEPARATE REFLECTIONS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0% POLYETHYLENE GLYCOL 6000, 0.15M REMARK 280 MAGNESIUM ACETATE, 0.1M SODIUM CACODYLATE PH 6.67, NANODROP', REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.68000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.68000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY REMARK 300 AND CRYSTAL PACKING ANALYSIS SUPPORT THE ASSIGNMENT OF A DIMER AS A REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 HIS A 4 REMARK 465 ASN A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 LYS A 9 REMARK 465 ILE A 275 REMARK 465 ALA A 276 REMARK 465 ASN A 277 REMARK 465 GLN A 278 REMARK 465 TYR A 279 REMARK 465 ALA A 280 REMARK 465 LYS A 281 REMARK 465 VAL A 282 REMARK 465 LYS A 283 REMARK 465 THR A 284 REMARK 465 ALA A 285 REMARK 465 LEU A 286 REMARK 465 THR A 287 REMARK 465 GLY A 288 REMARK 465 SER A 289 REMARK 465 VAL A 362 REMARK 465 SER A 363 REMARK 465 MSE A 364 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 ASN B 3 REMARK 465 HIS B 4 REMARK 465 ASN B 5 REMARK 465 ASN B 6 REMARK 465 SER B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 181 REMARK 465 ASP B 182 REMARK 465 ALA B 183 REMARK 465 ALA B 361 REMARK 465 VAL B 362 REMARK 465 SER B 363 REMARK 465 MSE B 364 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 LYS A 33 CE NZ REMARK 470 ASN A 47 CG OD1 ND2 REMARK 470 LYS A 53 CE NZ REMARK 470 ARG A 56 CD NE CZ NH1 NH2 REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 ASP A 182 CG OD1 OD2 REMARK 470 GLU A 226 CD OE1 OE2 REMARK 470 LYS A 230 CD CE NZ REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 GLU A 256 CD OE1 OE2 REMARK 470 ASP A 290 CG OD1 OD2 REMARK 470 TYR A 293 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 296 NE CZ NH1 NH2 REMARK 470 LYS A 334 CD CE NZ REMARK 470 LYS B 33 CD CE NZ REMARK 470 LYS B 49 CE NZ REMARK 470 LYS B 86 CD CE NZ REMARK 470 LYS B 136 CE NZ REMARK 470 ARG B 191 CD NE CZ NH1 NH2 REMARK 470 LYS B 230 CD CE NZ REMARK 470 ARG B 253 CZ NH1 NH2 REMARK 470 GLN B 278 CD OE1 NE2 REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 LYS B 283 CG CD CE NZ REMARK 470 LYS B 330 CE NZ REMARK 470 ASN B 348 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 212 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CSX A 111 -111.85 62.26 REMARK 500 ARG A 124 109.01 -55.36 REMARK 500 LYS A 181 -78.50 -86.20 REMARK 500 ALA A 183 135.19 -179.20 REMARK 500 CSX B 111 -112.61 69.91 REMARK 500 CSX B 111 -110.78 67.37 REMARK 500 THR B 287 -2.28 -144.35 REMARK 500 ASN B 348 50.67 -95.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 365 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 375658 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3FSE A 1 364 UNP Q3M4J2 Q3M4J2_ANAVT 1 364 DBREF 3FSE B 1 364 UNP Q3M4J2 Q3M4J2_ANAVT 1 364 SEQADV 3FSE GLY A 0 UNP Q3M4J2 EXPRESSION TAG SEQADV 3FSE GLY B 0 UNP Q3M4J2 EXPRESSION TAG SEQRES 1 A 365 GLY MSE THR ASN HIS ASN ASN SER GLY LYS LYS LYS VAL SEQRES 2 A 365 ALA ILE LEU ILE GLU GLN ALA VAL GLU ASP THR GLU PHE SEQRES 3 A 365 ILE ILE PRO CYS ASN GLY LEU LYS GLN ALA GLY PHE GLU SEQRES 4 A 365 VAL VAL VAL LEU GLY SER ARG MSE ASN GLU LYS TYR LYS SEQRES 5 A 365 GLY LYS ARG GLY ARG LEU SER THR GLN ALA ASP GLY THR SEQRES 6 A 365 THR THR GLU ALA ILE ALA SER GLU PHE ASP ALA VAL VAL SEQRES 7 A 365 ILE PRO GLY GLY MSE ALA PRO ASP LYS MSE ARG ARG ASN SEQRES 8 A 365 PRO ASN THR VAL ARG PHE VAL GLN GLU ALA MSE GLU GLN SEQRES 9 A 365 GLY LYS LEU VAL ALA ALA VAL CSX HIS GLY PRO GLN VAL SEQRES 10 A 365 LEU ILE GLU GLY ASP LEU LEU ARG GLY LYS GLN ALA THR SEQRES 11 A 365 GLY PHE ILE ALA ILE SER LYS ASP MSE MSE ASN ALA GLY SEQRES 12 A 365 ALA ASP TYR LEU ASP GLU ALA LEU VAL VAL ASP GLY ASN SEQRES 13 A 365 LEU ILE THR SER ARG GLU PRO GLY ASP LEU ALA ILE PHE SEQRES 14 A 365 THR THR ALA ILE LEU SER ARG LEU GLY TYR GLY GLY LYS SEQRES 15 A 365 ASP ALA ALA LEU PRO ASP GLU LYS ASP ARG ASN ALA GLU SEQRES 16 A 365 TRP TRP LYS LEU ALA ASP ALA TRP GLY GLY SER THR LYS SEQRES 17 A 365 GLY ASP ILE VAL ARG GLY LEU ASN THR ALA LEU GLY GLY SEQRES 18 A 365 GLU ARG TYR SER LEU GLU ALA LEU GLU LYS TYR THR GLU SEQRES 19 A 365 LYS GLU SER ASP VAL GLU ALA LYS ALA LEU PHE GLN GLU SEQRES 20 A 365 MSE ILE THR ASN LYS GLN ARG HIS ILE GLU TYR LEU GLU SEQRES 21 A 365 THR TYR LEU THR ARG LEU GLY GLU LYS PRO SER LEU SER SEQRES 22 A 365 ALA ASN ILE ALA ASN GLN TYR ALA LYS VAL LYS THR ALA SEQRES 23 A 365 LEU THR GLY SER ASP ASP ILE TYR GLN ILE ARG SER ALA SEQRES 24 A 365 LEU GLY ASP ILE GLN THR GLY ILE GLY ASP ILE GLY ASN SEQRES 25 A 365 LEU CYS ALA MSE TYR THR ASP PRO ILE ALA THR ALA ILE SEQRES 26 A 365 PHE LYS GLU ILE TYR LYS ASP LEU VAL LYS TYR GLU GLN SEQRES 27 A 365 ARG LEU VAL SER LEU TYR ARG THR ARG THR ASN ALA THR SEQRES 28 A 365 VAL GLN PRO PRO LYS PRO THR THR GLY ALA ALA VAL SER SEQRES 29 A 365 MSE SEQRES 1 B 365 GLY MSE THR ASN HIS ASN ASN SER GLY LYS LYS LYS VAL SEQRES 2 B 365 ALA ILE LEU ILE GLU GLN ALA VAL GLU ASP THR GLU PHE SEQRES 3 B 365 ILE ILE PRO CYS ASN GLY LEU LYS GLN ALA GLY PHE GLU SEQRES 4 B 365 VAL VAL VAL LEU GLY SER ARG MSE ASN GLU LYS TYR LYS SEQRES 5 B 365 GLY LYS ARG GLY ARG LEU SER THR GLN ALA ASP GLY THR SEQRES 6 B 365 THR THR GLU ALA ILE ALA SER GLU PHE ASP ALA VAL VAL SEQRES 7 B 365 ILE PRO GLY GLY MSE ALA PRO ASP LYS MSE ARG ARG ASN SEQRES 8 B 365 PRO ASN THR VAL ARG PHE VAL GLN GLU ALA MSE GLU GLN SEQRES 9 B 365 GLY LYS LEU VAL ALA ALA VAL CSX HIS GLY PRO GLN VAL SEQRES 10 B 365 LEU ILE GLU GLY ASP LEU LEU ARG GLY LYS GLN ALA THR SEQRES 11 B 365 GLY PHE ILE ALA ILE SER LYS ASP MSE MSE ASN ALA GLY SEQRES 12 B 365 ALA ASP TYR LEU ASP GLU ALA LEU VAL VAL ASP GLY ASN SEQRES 13 B 365 LEU ILE THR SER ARG GLU PRO GLY ASP LEU ALA ILE PHE SEQRES 14 B 365 THR THR ALA ILE LEU SER ARG LEU GLY TYR GLY GLY LYS SEQRES 15 B 365 ASP ALA ALA LEU PRO ASP GLU LYS ASP ARG ASN ALA GLU SEQRES 16 B 365 TRP TRP LYS LEU ALA ASP ALA TRP GLY GLY SER THR LYS SEQRES 17 B 365 GLY ASP ILE VAL ARG GLY LEU ASN THR ALA LEU GLY GLY SEQRES 18 B 365 GLU ARG TYR SER LEU GLU ALA LEU GLU LYS TYR THR GLU SEQRES 19 B 365 LYS GLU SER ASP VAL GLU ALA LYS ALA LEU PHE GLN GLU SEQRES 20 B 365 MSE ILE THR ASN LYS GLN ARG HIS ILE GLU TYR LEU GLU SEQRES 21 B 365 THR TYR LEU THR ARG LEU GLY GLU LYS PRO SER LEU SER SEQRES 22 B 365 ALA ASN ILE ALA ASN GLN TYR ALA LYS VAL LYS THR ALA SEQRES 23 B 365 LEU THR GLY SER ASP ASP ILE TYR GLN ILE ARG SER ALA SEQRES 24 B 365 LEU GLY ASP ILE GLN THR GLY ILE GLY ASP ILE GLY ASN SEQRES 25 B 365 LEU CYS ALA MSE TYR THR ASP PRO ILE ALA THR ALA ILE SEQRES 26 B 365 PHE LYS GLU ILE TYR LYS ASP LEU VAL LYS TYR GLU GLN SEQRES 27 B 365 ARG LEU VAL SER LEU TYR ARG THR ARG THR ASN ALA THR SEQRES 28 B 365 VAL GLN PRO PRO LYS PRO THR THR GLY ALA ALA VAL SER SEQRES 29 B 365 MSE MODRES 3FSE MSE A 46 MET SELENOMETHIONINE MODRES 3FSE MSE A 82 MET SELENOMETHIONINE MODRES 3FSE MSE A 87 MET SELENOMETHIONINE MODRES 3FSE MSE A 101 MET SELENOMETHIONINE MODRES 3FSE CSX A 111 CYS S-OXY CYSTEINE MODRES 3FSE MSE A 138 MET SELENOMETHIONINE MODRES 3FSE MSE A 139 MET SELENOMETHIONINE MODRES 3FSE MSE A 247 MET SELENOMETHIONINE MODRES 3FSE MSE A 315 MET SELENOMETHIONINE MODRES 3FSE MSE B 46 MET SELENOMETHIONINE MODRES 3FSE MSE B 82 MET SELENOMETHIONINE MODRES 3FSE MSE B 87 MET SELENOMETHIONINE MODRES 3FSE MSE B 101 MET SELENOMETHIONINE MODRES 3FSE CSX B 111 CYS S-OXY CYSTEINE MODRES 3FSE MSE B 138 MET SELENOMETHIONINE MODRES 3FSE MSE B 139 MET SELENOMETHIONINE MODRES 3FSE MSE B 247 MET SELENOMETHIONINE MODRES 3FSE MSE B 315 MET SELENOMETHIONINE HET MSE A 46 8 HET MSE A 82 13 HET MSE A 87 8 HET MSE A 101 8 HET CSX A 111 7 HET MSE A 138 8 HET MSE A 139 8 HET MSE A 247 8 HET MSE A 315 8 HET MSE B 46 8 HET MSE B 82 13 HET MSE B 87 8 HET MSE B 101 8 HET CSX B 111 11 HET MSE B 138 8 HET MSE B 139 8 HET MSE B 247 8 HET MSE B 315 8 HET EDO B 365 4 HETNAM MSE SELENOMETHIONINE HETNAM CSX S-OXY CYSTEINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 1 CSX 2(C3 H7 N O3 S) FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *456(H2 O) HELIX 1 1 GLU A 21 ALA A 35 1 15 HELIX 2 2 ILE A 69 PHE A 73 5 5 HELIX 3 3 MSE A 82 ARG A 88 1 7 HELIX 4 4 ASN A 90 GLN A 103 1 14 HELIX 5 5 GLY A 113 GLY A 120 1 8 HELIX 6 6 PHE A 131 ALA A 133 5 3 HELIX 7 7 ILE A 134 ALA A 141 1 8 HELIX 8 8 GLU A 161 GLY A 163 5 3 HELIX 9 9 ASP A 164 LEU A 176 1 13 HELIX 10 10 GLU A 194 TRP A 202 1 9 HELIX 11 11 THR A 206 GLU A 235 1 30 HELIX 12 12 ASP A 237 LEU A 265 1 29 HELIX 13 13 LYS A 268 SER A 272 5 5 HELIX 14 14 ASP A 290 CYS A 313 1 24 HELIX 15 15 ASP A 318 THR A 350 1 33 HELIX 16 16 GLU B 21 ALA B 35 1 15 HELIX 17 17 ILE B 69 PHE B 73 5 5 HELIX 18 18 MSE B 82 ARG B 88 1 7 HELIX 19 19 ASN B 90 GLN B 103 1 14 HELIX 20 20 GLY B 113 GLY B 120 1 8 HELIX 21 21 PHE B 131 ALA B 133 5 3 HELIX 22 22 ILE B 134 ALA B 141 1 8 HELIX 23 23 GLU B 161 GLY B 163 5 3 HELIX 24 24 ASP B 164 LEU B 176 1 13 HELIX 25 25 GLU B 194 TRP B 202 1 9 HELIX 26 26 THR B 206 GLU B 235 1 30 HELIX 27 27 ASP B 237 LEU B 265 1 29 HELIX 28 28 LYS B 268 ASN B 277 1 10 HELIX 29 29 ALA B 280 ALA B 285 1 6 HELIX 30 30 ASP B 290 CYS B 313 1 24 HELIX 31 31 ASP B 318 THR B 347 1 30 SHEET 1 A 7 GLY A 63 THR A 64 0 SHEET 2 A 7 GLU A 38 GLY A 43 1 N GLY A 43 O GLY A 63 SHEET 3 A 7 LYS A 11 LEU A 15 1 N VAL A 12 O GLU A 38 SHEET 4 A 7 ALA A 75 ILE A 78 1 O VAL A 77 N LEU A 15 SHEET 5 A 7 LEU A 106 VAL A 110 1 O ALA A 108 N ILE A 78 SHEET 6 A 7 LEU A 156 SER A 159 1 O ILE A 157 N VAL A 107 SHEET 7 A 7 VAL A 151 ASP A 153 -1 N ASP A 153 O LEU A 156 SHEET 1 B 2 TYR A 50 LYS A 51 0 SHEET 2 B 2 SER A 58 THR A 59 -1 O THR A 59 N TYR A 50 SHEET 1 C 2 GLN A 127 ALA A 128 0 SHEET 2 C 2 ASP A 144 TYR A 145 1 O ASP A 144 N ALA A 128 SHEET 1 D 7 GLY B 63 THR B 64 0 SHEET 2 D 7 GLU B 38 GLY B 43 1 N GLY B 43 O GLY B 63 SHEET 3 D 7 LYS B 11 LEU B 15 1 N VAL B 12 O GLU B 38 SHEET 4 D 7 ALA B 75 ILE B 78 1 O VAL B 77 N LEU B 15 SHEET 5 D 7 LEU B 106 VAL B 110 1 O ALA B 108 N ILE B 78 SHEET 6 D 7 LEU B 156 SER B 159 1 O ILE B 157 N VAL B 107 SHEET 7 D 7 VAL B 151 ASP B 153 -1 N ASP B 153 O LEU B 156 SHEET 1 E 2 TYR B 50 LYS B 51 0 SHEET 2 E 2 SER B 58 THR B 59 -1 O THR B 59 N TYR B 50 SHEET 1 F 2 GLN B 127 ALA B 128 0 SHEET 2 F 2 ASP B 144 TYR B 145 1 O ASP B 144 N ALA B 128 LINK C ARG A 45 N MSE A 46 1555 1555 1.33 LINK C MSE A 46 N ASN A 47 1555 1555 1.33 LINK C GLY A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N ALA A 83 1555 1555 1.34 LINK C LYS A 86 N MSE A 87 1555 1555 1.34 LINK C MSE A 87 N ARG A 88 1555 1555 1.34 LINK C ALA A 100 N MSE A 101 1555 1555 1.34 LINK C MSE A 101 N GLU A 102 1555 1555 1.34 LINK C VAL A 110 N CSX A 111 1555 1555 1.34 LINK C CSX A 111 N HIS A 112 1555 1555 1.33 LINK C ASP A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N ASN A 140 1555 1555 1.33 LINK C GLU A 246 N MSE A 247 1555 1555 1.33 LINK C MSE A 247 N ILE A 248 1555 1555 1.34 LINK C ALA A 314 N MSE A 315 1555 1555 1.33 LINK C MSE A 315 N TYR A 316 1555 1555 1.33 LINK C ARG B 45 N MSE B 46 1555 1555 1.32 LINK C MSE B 46 N ASN B 47 1555 1555 1.33 LINK C GLY B 81 N MSE B 82 1555 1555 1.32 LINK C MSE B 82 N ALA B 83 1555 1555 1.35 LINK C LYS B 86 N MSE B 87 1555 1555 1.34 LINK C MSE B 87 N ARG B 88 1555 1555 1.33 LINK C ALA B 100 N MSE B 101 1555 1555 1.33 LINK C MSE B 101 N GLU B 102 1555 1555 1.33 LINK C VAL B 110 N CSX B 111 1555 1555 1.35 LINK C CSX B 111 N HIS B 112 1555 1555 1.34 LINK C ASP B 137 N MSE B 138 1555 1555 1.33 LINK C MSE B 138 N MSE B 139 1555 1555 1.33 LINK C MSE B 139 N ASN B 140 1555 1555 1.33 LINK C GLU B 246 N MSE B 247 1555 1555 1.34 LINK C MSE B 247 N ILE B 248 1555 1555 1.34 LINK C ALA B 314 N MSE B 315 1555 1555 1.34 LINK C MSE B 315 N TYR B 316 1555 1555 1.34 CISPEP 1 GLN A 352 PRO A 353 0 -0.84 SITE 1 AC1 8 ASP A 85 ARG A 89 GLU B 21 LYS B 53 SITE 2 AC1 8 GLY B 81 CSX B 111 HIS B 112 PHE B 131 CRYST1 137.360 39.690 123.060 90.00 93.04 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007280 0.000000 0.000386 0.00000 SCALE2 0.000000 0.025195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008138 0.00000