HEADER ISOMERASE 11-JAN-09 3FSN TITLE CRYSTAL STRUCTURE OF RPE65 AT 2.14 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINAL PIGMENT EPITHELIUM-SPECIFIC 65 KDA PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MEMBRANE RECEPTOR P63; COMPND 5 EC: 5.2.1.7 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE,COW; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS 7-BLADED BETA-PROPELLER, PALMITOYLATION, CELL MEMBRANE, LIPOPROTEIN, KEYWDS 2 MEMBRANE, PALMITATE, SENSORY TRANSDUCTION, VISION, ISOMERASE, KEYWDS 3 ISOMEROHYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.D.KISER,D.T.LODOWSKI,K.PALCZEWSKI REVDAT 5 21-FEB-24 3FSN 1 REMARK SEQADV SHEET REVDAT 4 24-JAN-18 3FSN 1 AUTHOR REVDAT 3 13-JUL-11 3FSN 1 VERSN REVDAT 2 26-JAN-10 3FSN 1 JRNL REVDAT 1 29-SEP-09 3FSN 0 JRNL AUTH P.D.KISER,M.GOLCZAK,D.T.LODOWSKI,M.R.CHANCE,K.PALCZEWSKI JRNL TITL CRYSTAL STRUCTURE OF NATIVE RPE65, THE RETINOID ISOMERASE OF JRNL TITL 2 THE VISUAL CYCLE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 17325 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19805034 JRNL DOI 10.1073/PNAS.0906600106 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 80559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4299 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5777 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 298 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8301 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 274 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.76000 REMARK 3 B22 (A**2) : 1.76000 REMARK 3 B33 (A**2) : -2.64000 REMARK 3 B12 (A**2) : 0.88000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.180 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8616 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5817 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11725 ; 1.404 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14142 ; 0.878 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1035 ; 6.918 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 413 ;32.081 ;24.310 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1384 ;13.468 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.434 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1267 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9538 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1790 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1344 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5789 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4087 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 4382 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 360 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.137 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.264 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6632 ; 0.978 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2051 ; 0.175 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8413 ; 1.169 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4164 ; 1.871 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3306 ; 2.529 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 196 A 202 4 REMARK 3 1 B 196 B 202 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 101 ; 0.96 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 101 ; 0.31 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): -30.4009 131.3422 2.3444 REMARK 3 T TENSOR REMARK 3 T11: -0.0848 T22: -0.1490 REMARK 3 T33: -0.0810 T12: -0.0647 REMARK 3 T13: -0.0005 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 1.1282 L22: 0.9689 REMARK 3 L33: 2.1287 L12: 0.2678 REMARK 3 L13: 0.1693 L23: -0.0016 REMARK 3 S TENSOR REMARK 3 S11: 0.0883 S12: -0.2140 S13: 0.1102 REMARK 3 S21: 0.2198 S22: -0.0822 S23: 0.0258 REMARK 3 S31: -0.1111 S32: -0.0250 S33: -0.0061 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 533 REMARK 3 ORIGIN FOR THE GROUP (A): -45.7380 108.0148 -34.5019 REMARK 3 T TENSOR REMARK 3 T11: -0.1351 T22: -0.1638 REMARK 3 T33: -0.0827 T12: -0.0372 REMARK 3 T13: -0.0398 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.8577 L22: 1.3193 REMARK 3 L33: 1.9669 L12: 0.0576 REMARK 3 L13: -0.2338 L23: 0.2731 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: 0.1026 S13: -0.0080 REMARK 3 S21: -0.2270 S22: -0.0146 S23: 0.1494 REMARK 3 S31: 0.0000 S32: -0.1432 S33: 0.0247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03324 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER. ADJUSTABLE REMARK 200 FOCUSING MIRRORS IN K-B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83509 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11600 REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.73400 REMARK 200 FOR SHELL : 2.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT: PEG200, PH 6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.90800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.95400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.43100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 14.47700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.38500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 109 REMARK 465 ASP A 110 REMARK 465 PRO A 111 REMARK 465 CYS A 112 REMARK 465 LYS A 113 REMARK 465 ASN A 114 REMARK 465 ILE A 115 REMARK 465 PHE A 116 REMARK 465 SER A 117 REMARK 465 ARG A 118 REMARK 465 PHE A 119 REMARK 465 PHE A 120 REMARK 465 SER A 121 REMARK 465 TYR A 122 REMARK 465 PHE A 123 REMARK 465 ARG A 124 REMARK 465 GLY A 125 REMARK 465 VAL A 126 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 110 REMARK 465 PRO B 111 REMARK 465 CYS B 112 REMARK 465 LYS B 113 REMARK 465 ASN B 114 REMARK 465 ILE B 115 REMARK 465 PHE B 116 REMARK 465 SER B 117 REMARK 465 ARG B 118 REMARK 465 PHE B 119 REMARK 465 PHE B 120 REMARK 465 SER B 121 REMARK 465 TYR B 122 REMARK 465 PHE B 123 REMARK 465 ARG B 124 REMARK 465 GLY B 125 REMARK 465 VAL B 126 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 131 94.41 -68.19 REMARK 500 THR A 147 -138.34 -116.79 REMARK 500 THR A 149 -169.85 -103.62 REMARK 500 PHE A 200 17.44 58.12 REMARK 500 LEU A 270 -75.84 -92.85 REMARK 500 ILE A 315 -60.57 -93.24 REMARK 500 HIS A 321 -129.72 54.31 REMARK 500 GLU A 322 53.78 -112.08 REMARK 500 GLU A 399 -10.18 83.75 REMARK 500 PRO A 412 106.82 -59.63 REMARK 500 PHE A 442 -7.26 80.49 REMARK 500 ASP A 509 12.94 -142.02 REMARK 500 PHE A 526 -62.82 -102.72 REMARK 500 ASN B 131 91.67 -63.98 REMARK 500 THR B 147 -134.43 -110.52 REMARK 500 THR B 149 -162.93 -102.55 REMARK 500 PHE B 200 27.47 45.82 REMARK 500 TRP B 271 -55.42 -159.80 REMARK 500 HIS B 321 -130.57 46.13 REMARK 500 GLU B 322 34.89 -92.10 REMARK 500 GLU B 399 -3.35 82.55 REMARK 500 PRO B 412 106.95 -59.01 REMARK 500 PHE B 442 -2.54 76.32 REMARK 500 PHE B 526 -64.52 -97.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 534 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 180 NE2 REMARK 620 2 HIS A 241 NE2 95.7 REMARK 620 3 HIS A 313 NE2 100.7 96.9 REMARK 620 4 HIS A 527 NE2 87.0 168.3 93.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 534 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 180 NE2 REMARK 620 2 HIS B 241 NE2 93.4 REMARK 620 3 HIS B 313 NE2 99.7 96.4 REMARK 620 4 HIS B 527 NE2 90.4 169.9 92.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 534 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 535 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 534 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 535 DBREF 3FSN A 1 533 UNP Q28175 RPE65_BOVIN 1 533 DBREF 3FSN B 1 533 UNP Q28175 RPE65_BOVIN 1 533 SEQADV 3FSN LEU A 341 UNP Q28175 SER 341 VARIANT SEQADV 3FSN LEU B 341 UNP Q28175 SER 341 VARIANT SEQRES 1 A 533 MET SER SER GLN VAL GLU HIS PRO ALA GLY GLY TYR LYS SEQRES 2 A 533 LYS LEU PHE GLU THR VAL GLU GLU LEU SER SER PRO LEU SEQRES 3 A 533 THR ALA HIS VAL THR GLY ARG ILE PRO LEU TRP LEU THR SEQRES 4 A 533 GLY SER LEU LEU ARG CYS GLY PRO GLY LEU PHE GLU VAL SEQRES 5 A 533 GLY SER GLU PRO PHE TYR HIS LEU PHE ASP GLY GLN ALA SEQRES 6 A 533 LEU LEU HIS LYS PHE ASP PHE LYS GLU GLY HIS VAL THR SEQRES 7 A 533 TYR HIS ARG ARG PHE ILE ARG THR ASP ALA TYR VAL ARG SEQRES 8 A 533 ALA MET THR GLU LYS ARG ILE VAL ILE THR GLU PHE GLY SEQRES 9 A 533 THR CYS ALA PHE PRO ASP PRO CYS LYS ASN ILE PHE SER SEQRES 10 A 533 ARG PHE PHE SER TYR PHE ARG GLY VAL GLU VAL THR ASP SEQRES 11 A 533 ASN ALA LEU VAL ASN ILE TYR PRO VAL GLY GLU ASP TYR SEQRES 12 A 533 TYR ALA CYS THR GLU THR ASN PHE ILE THR LYS VAL ASN SEQRES 13 A 533 PRO GLU THR LEU GLU THR ILE LYS GLN VAL ASP LEU CYS SEQRES 14 A 533 ASN TYR VAL SER VAL ASN GLY ALA THR ALA HIS PRO HIS SEQRES 15 A 533 ILE GLU ASN ASP GLY THR VAL TYR ASN ILE GLY ASN CYS SEQRES 16 A 533 PHE GLY LYS ASN PHE SER ILE ALA TYR ASN ILE VAL LYS SEQRES 17 A 533 ILE PRO PRO LEU GLN ALA ASP LYS GLU ASP PRO ILE SER SEQRES 18 A 533 LYS SER GLU ILE VAL VAL GLN PHE PRO CYS SER ASP ARG SEQRES 19 A 533 PHE LYS PRO SER TYR VAL HIS SER PHE GLY LEU THR PRO SEQRES 20 A 533 ASN TYR ILE VAL PHE VAL GLU THR PRO VAL LYS ILE ASN SEQRES 21 A 533 LEU PHE LYS PHE LEU SER SER TRP SER LEU TRP GLY ALA SEQRES 22 A 533 ASN TYR MET ASP CYS PHE GLU SER ASN GLU THR MET GLY SEQRES 23 A 533 VAL TRP LEU HIS ILE ALA ASP LYS LYS ARG LYS LYS TYR SEQRES 24 A 533 ILE ASN ASN LYS TYR ARG THR SER PRO PHE ASN LEU PHE SEQRES 25 A 533 HIS HIS ILE ASN THR TYR GLU ASP HIS GLU PHE LEU ILE SEQRES 26 A 533 VAL ASP LEU CYS CYS TRP LYS GLY PHE GLU PHE VAL TYR SEQRES 27 A 533 ASN TYR LEU TYR LEU ALA ASN LEU ARG GLU ASN TRP GLU SEQRES 28 A 533 GLU VAL LYS LYS ASN ALA ARG LYS ALA PRO GLN PRO GLU SEQRES 29 A 533 VAL ARG ARG TYR VAL LEU PRO LEU ASN ILE ASP LYS ALA SEQRES 30 A 533 ASP THR GLY LYS ASN LEU VAL THR LEU PRO ASN THR THR SEQRES 31 A 533 ALA THR ALA ILE LEU CYS SER ASP GLU THR ILE TRP LEU SEQRES 32 A 533 GLU PRO GLU VAL LEU PHE SER GLY PRO ARG GLN ALA PHE SEQRES 33 A 533 GLU PHE PRO GLN ILE ASN TYR GLN LYS TYR GLY GLY LYS SEQRES 34 A 533 PRO TYR THR TYR ALA TYR GLY LEU GLY LEU ASN HIS PHE SEQRES 35 A 533 VAL PRO ASP ARG LEU CYS LYS LEU ASN VAL LYS THR LYS SEQRES 36 A 533 GLU THR TRP VAL TRP GLN GLU PRO ASP SER TYR PRO SER SEQRES 37 A 533 GLU PRO ILE PHE VAL SER HIS PRO ASP ALA LEU GLU GLU SEQRES 38 A 533 ASP ASP GLY VAL VAL LEU SER VAL VAL VAL SER PRO GLY SEQRES 39 A 533 ALA GLY GLN LYS PRO ALA TYR LEU LEU ILE LEU ASN ALA SEQRES 40 A 533 LYS ASP LEU SER GLU VAL ALA ARG ALA GLU VAL GLU ILE SEQRES 41 A 533 ASN ILE PRO VAL THR PHE HIS GLY LEU PHE LYS LYS SER SEQRES 1 B 533 MET SER SER GLN VAL GLU HIS PRO ALA GLY GLY TYR LYS SEQRES 2 B 533 LYS LEU PHE GLU THR VAL GLU GLU LEU SER SER PRO LEU SEQRES 3 B 533 THR ALA HIS VAL THR GLY ARG ILE PRO LEU TRP LEU THR SEQRES 4 B 533 GLY SER LEU LEU ARG CYS GLY PRO GLY LEU PHE GLU VAL SEQRES 5 B 533 GLY SER GLU PRO PHE TYR HIS LEU PHE ASP GLY GLN ALA SEQRES 6 B 533 LEU LEU HIS LYS PHE ASP PHE LYS GLU GLY HIS VAL THR SEQRES 7 B 533 TYR HIS ARG ARG PHE ILE ARG THR ASP ALA TYR VAL ARG SEQRES 8 B 533 ALA MET THR GLU LYS ARG ILE VAL ILE THR GLU PHE GLY SEQRES 9 B 533 THR CYS ALA PHE PRO ASP PRO CYS LYS ASN ILE PHE SER SEQRES 10 B 533 ARG PHE PHE SER TYR PHE ARG GLY VAL GLU VAL THR ASP SEQRES 11 B 533 ASN ALA LEU VAL ASN ILE TYR PRO VAL GLY GLU ASP TYR SEQRES 12 B 533 TYR ALA CYS THR GLU THR ASN PHE ILE THR LYS VAL ASN SEQRES 13 B 533 PRO GLU THR LEU GLU THR ILE LYS GLN VAL ASP LEU CYS SEQRES 14 B 533 ASN TYR VAL SER VAL ASN GLY ALA THR ALA HIS PRO HIS SEQRES 15 B 533 ILE GLU ASN ASP GLY THR VAL TYR ASN ILE GLY ASN CYS SEQRES 16 B 533 PHE GLY LYS ASN PHE SER ILE ALA TYR ASN ILE VAL LYS SEQRES 17 B 533 ILE PRO PRO LEU GLN ALA ASP LYS GLU ASP PRO ILE SER SEQRES 18 B 533 LYS SER GLU ILE VAL VAL GLN PHE PRO CYS SER ASP ARG SEQRES 19 B 533 PHE LYS PRO SER TYR VAL HIS SER PHE GLY LEU THR PRO SEQRES 20 B 533 ASN TYR ILE VAL PHE VAL GLU THR PRO VAL LYS ILE ASN SEQRES 21 B 533 LEU PHE LYS PHE LEU SER SER TRP SER LEU TRP GLY ALA SEQRES 22 B 533 ASN TYR MET ASP CYS PHE GLU SER ASN GLU THR MET GLY SEQRES 23 B 533 VAL TRP LEU HIS ILE ALA ASP LYS LYS ARG LYS LYS TYR SEQRES 24 B 533 ILE ASN ASN LYS TYR ARG THR SER PRO PHE ASN LEU PHE SEQRES 25 B 533 HIS HIS ILE ASN THR TYR GLU ASP HIS GLU PHE LEU ILE SEQRES 26 B 533 VAL ASP LEU CYS CYS TRP LYS GLY PHE GLU PHE VAL TYR SEQRES 27 B 533 ASN TYR LEU TYR LEU ALA ASN LEU ARG GLU ASN TRP GLU SEQRES 28 B 533 GLU VAL LYS LYS ASN ALA ARG LYS ALA PRO GLN PRO GLU SEQRES 29 B 533 VAL ARG ARG TYR VAL LEU PRO LEU ASN ILE ASP LYS ALA SEQRES 30 B 533 ASP THR GLY LYS ASN LEU VAL THR LEU PRO ASN THR THR SEQRES 31 B 533 ALA THR ALA ILE LEU CYS SER ASP GLU THR ILE TRP LEU SEQRES 32 B 533 GLU PRO GLU VAL LEU PHE SER GLY PRO ARG GLN ALA PHE SEQRES 33 B 533 GLU PHE PRO GLN ILE ASN TYR GLN LYS TYR GLY GLY LYS SEQRES 34 B 533 PRO TYR THR TYR ALA TYR GLY LEU GLY LEU ASN HIS PHE SEQRES 35 B 533 VAL PRO ASP ARG LEU CYS LYS LEU ASN VAL LYS THR LYS SEQRES 36 B 533 GLU THR TRP VAL TRP GLN GLU PRO ASP SER TYR PRO SER SEQRES 37 B 533 GLU PRO ILE PHE VAL SER HIS PRO ASP ALA LEU GLU GLU SEQRES 38 B 533 ASP ASP GLY VAL VAL LEU SER VAL VAL VAL SER PRO GLY SEQRES 39 B 533 ALA GLY GLN LYS PRO ALA TYR LEU LEU ILE LEU ASN ALA SEQRES 40 B 533 LYS ASP LEU SER GLU VAL ALA ARG ALA GLU VAL GLU ILE SEQRES 41 B 533 ASN ILE PRO VAL THR PHE HIS GLY LEU PHE LYS LYS SER HET FE2 A 534 1 HET PG4 A 535 13 HET FE2 B 534 1 HET PG4 B 535 13 HETNAM FE2 FE (II) ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 3 FE2 2(FE 2+) FORMUL 4 PG4 2(C8 H18 O5) FORMUL 7 HOH *274(H2 O) HELIX 1 1 GLY A 11 PHE A 16 5 6 HELIX 2 2 ASP A 87 GLU A 95 1 9 HELIX 3 3 LEU A 168 TYR A 171 5 4 HELIX 4 4 PRO A 219 LYS A 222 5 4 HELIX 5 5 LEU A 261 LEU A 270 1 10 HELIX 6 6 TYR A 275 CYS A 278 5 4 HELIX 7 7 VAL A 337 LEU A 341 5 5 HELIX 8 8 LEU A 343 ARG A 347 1 5 HELIX 9 9 TRP A 350 ALA A 357 1 8 HELIX 10 11 TYR A 423 TYR A 426 1 4 HELIX 11 1 GLY B 11 PHE B 16 5 6 HELIX 12 2 ASP B 87 GLU B 95 1 9 HELIX 13 3 LEU B 168 TYR B 171 5 4 HELIX 14 4 PRO B 219 LYS B 222 5 4 HELIX 15 5 LEU B 261 LEU B 270 1 10 HELIX 16 6 TYR B 275 CYS B 278 5 4 HELIX 17 7 VAL B 337 LEU B 341 5 5 HELIX 18 8 LEU B 343 ARG B 347 1 5 HELIX 19 9 TRP B 350 ALA B 357 1 8 HELIX 20 11 TYR B 423 TYR B 426 1 4 SHEET 1 A 5 LEU A 26 THR A 27 0 SHEET 2 A 5 HIS A 76 PHE A 83 -1 O TYR A 79 N LEU A 26 SHEET 3 A 5 GLN A 64 LYS A 73 -1 N LEU A 67 O ARG A 82 SHEET 4 A 5 GLY A 40 GLY A 48 -1 N GLY A 40 O PHE A 72 SHEET 5 A 5 PHE A 526 LYS A 532 -1 O LYS A 531 N SER A 41 SHEET 1 B 5 HIS A 29 THR A 31 0 SHEET 2 B 5 VAL A 513 VAL A 518 -1 O ARG A 515 N THR A 31 SHEET 3 B 5 ALA A 500 ASN A 506 -1 N LEU A 502 O ALA A 516 SHEET 4 B 5 GLY A 484 VAL A 491 -1 N SER A 488 O LEU A 503 SHEET 5 B 5 TYR A 466 PRO A 467 -1 N TYR A 466 O VAL A 491 SHEET 1 C 1 ILE A 471 SER A 474 0 SHEET 1 D 2 PHE A 50 VAL A 52 0 SHEET 2 D 2 GLU A 55 PHE A 57 -1 O GLU A 55 N VAL A 52 SHEET 1 E 4 VAL A 134 VAL A 139 0 SHEET 2 E 4 ASP A 142 CYS A 146 -1 O ASP A 142 N VAL A 139 SHEET 3 E 4 PHE A 151 VAL A 155 -1 O THR A 153 N ALA A 145 SHEET 4 E 4 ILE A 163 ASP A 167 -1 O VAL A 166 N ILE A 152 SHEET 1 F 4 HIS A 182 GLU A 184 0 SHEET 2 F 4 GLY A 187 GLY A 193 -1 O TYR A 190 N HIS A 182 SHEET 3 F 4 TYR A 204 ILE A 209 -1 O ILE A 209 N VAL A 189 SHEET 4 F 4 GLU A 224 PHE A 229 -1 O VAL A 227 N ILE A 206 SHEET 1 G 7 SER A 242 THR A 246 0 SHEET 2 G 7 TYR A 249 GLU A 254 -1 O VAL A 251 N GLY A 244 SHEET 3 G 7 VAL A 287 ASP A 293 -1 O TRP A 288 N GLU A 254 SHEET 4 G 7 LYS A 298 ILE A 300 -1 O LYS A 298 N ASP A 293 SHEET 5 G 7 LYS A 303 THR A 306 -1 SHEET 6 G 7 GLU A 399 GLU A 404 1 O ILE A 401 N LYS A 303 SHEET 7 G 7 THR A 392 LEU A 395 -1 N ILE A 394 O TRP A 402 SHEET 1 H 2 VAL A 257 ILE A 259 0 SHEET 2 H 2 PHE A 279 SER A 281 -1 O GLU A 280 N LYS A 258 SHEET 1 I 4 PHE A 309 ASP A 320 0 SHEET 2 I 4 PHE A 323 LYS A 332 -1 O ILE A 325 N TYR A 318 SHEET 3 I 4 GLN A 362 PRO A 371 -1 O ARG A 366 N LEU A 328 SHEET 4 I 4 GLU A 406 PHE A 409 -1 O GLU A 406 N ARG A 367 SHEET 1 J 4 GLN A 414 GLN A 420 0 SHEET 2 J 4 TYR A 433 ASN A 440 -1 O TYR A 435 N GLN A 420 SHEET 3 J 4 VAL A 443 ASN A 451 -1 O VAL A 443 N ASN A 440 SHEET 4 J 4 THR A 454 TRP A 460 -1 O GLU A 456 N ASN A 451 SHEET 1 K10 LEU B 26 THR B 27 0 SHEET 2 K10 HIS B 76 PHE B 83 -1 O TYR B 79 N LEU B 26 SHEET 3 K10 GLN B 64 LYS B 73 -1 N LEU B 67 O ARG B 82 SHEET 4 K10 GLY B 40 GLY B 48 -1 N GLY B 40 O PHE B 72 SHEET 5 K10 PHE B 526 LYS B 532 -1 O LYS B 531 N SER B 41 SHEET 6 K10 HIS B 29 THR B 31 0 SHEET 7 K10 VAL B 513 VAL B 518 -1 O ARG B 515 N THR B 31 SHEET 8 K10 ALA B 500 ASN B 506 -1 N LEU B 502 O ALA B 516 SHEET 9 K10 GLY B 484 VAL B 491 -1 N SER B 488 O LEU B 503 SHEET 10 K10 TYR B 466 PRO B 467 -1 N TYR B 466 O VAL B 491 SHEET 1 L 1 ILE B 471 SER B 474 0 SHEET 1 M 2 PHE B 50 VAL B 52 0 SHEET 2 M 2 GLU B 55 PHE B 57 -1 O GLU B 55 N VAL B 52 SHEET 1 N 4 VAL B 134 VAL B 139 0 SHEET 2 N 4 ASP B 142 CYS B 146 -1 O ASP B 142 N VAL B 139 SHEET 3 N 4 PHE B 151 VAL B 155 -1 O THR B 153 N ALA B 145 SHEET 4 N 4 ILE B 163 ASP B 167 -1 O VAL B 166 N ILE B 152 SHEET 1 O 4 HIS B 182 GLU B 184 0 SHEET 2 O 4 GLY B 187 GLY B 193 -1 O TYR B 190 N HIS B 182 SHEET 3 O 4 TYR B 204 ILE B 209 -1 O ILE B 209 N VAL B 189 SHEET 4 O 4 GLU B 224 PHE B 229 -1 O VAL B 227 N ILE B 206 SHEET 1 P 7 SER B 242 THR B 246 0 SHEET 2 P 7 TYR B 249 GLU B 254 -1 O VAL B 251 N GLY B 244 SHEET 3 P 7 VAL B 287 ASP B 293 -1 O TRP B 288 N GLU B 254 SHEET 4 P 7 LYS B 298 ILE B 300 -1 O LYS B 298 N ASP B 293 SHEET 5 P 7 LYS B 303 THR B 306 -1 SHEET 6 P 7 GLU B 399 GLU B 404 1 O ILE B 401 N LYS B 303 SHEET 7 P 7 THR B 392 LEU B 395 -1 N ILE B 394 O TRP B 402 SHEET 1 Q 2 VAL B 257 ILE B 259 0 SHEET 2 Q 2 PHE B 279 SER B 281 -1 O GLU B 280 N LYS B 258 SHEET 1 R 4 PHE B 309 ASP B 320 0 SHEET 2 R 4 PHE B 323 LYS B 332 -1 O ILE B 325 N TYR B 318 SHEET 3 R 4 GLN B 362 PRO B 371 -1 O ARG B 366 N LEU B 328 SHEET 4 R 4 GLU B 406 PHE B 409 -1 O GLU B 406 N ARG B 367 SHEET 1 S 4 GLN B 414 GLN B 420 0 SHEET 2 S 4 TYR B 433 ASN B 440 -1 O TYR B 435 N GLN B 420 SHEET 3 S 4 VAL B 443 ASN B 451 -1 O VAL B 443 N ASN B 440 SHEET 4 S 4 THR B 454 TRP B 460 -1 O GLU B 456 N ASN B 451 LINK NE2 HIS A 180 FE FE2 A 534 1555 1555 2.26 LINK NE2 HIS A 241 FE FE2 A 534 1555 1555 2.16 LINK NE2 HIS A 313 FE FE2 A 534 1555 1555 2.19 LINK NE2 HIS A 527 FE FE2 A 534 1555 1555 2.16 LINK NE2 HIS B 180 FE FE2 B 534 1555 1555 2.15 LINK NE2 HIS B 241 FE FE2 B 534 1555 1555 2.16 LINK NE2 HIS B 313 FE FE2 B 534 1555 1555 2.16 LINK NE2 HIS B 527 FE FE2 B 534 1555 1555 2.18 SITE 1 AC1 4 HIS A 180 HIS A 241 HIS A 313 HIS A 527 SITE 1 AC2 8 TYR A 249 ARG A 296 ASN B 248 TYR B 249 SITE 2 AC2 8 ASP B 293 LYS B 294 LYS B 295 ARG B 296 SITE 1 AC3 4 HIS B 180 HIS B 241 HIS B 313 HIS B 527 SITE 1 AC4 6 TYR A 249 ARG A 296 ASN B 248 ASP B 293 SITE 2 AC4 6 LYS B 295 ARG B 296 CRYST1 176.516 176.516 86.862 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005665 0.003271 0.000000 0.00000 SCALE2 0.000000 0.006542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011513 0.00000