data_3FSP # _entry.id 3FSP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.314 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3FSP NDB PD1218 RCSB RCSB050994 WWPDB D_1000050994 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2019-08-28 _pdbx_database_PDB_obs_spr.pdb_id 6Q0C _pdbx_database_PDB_obs_spr.replace_pdb_id 3FSP _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1RRQ 'MutY bound to DNA with an A:8-oxoG basepair, the lesion recognition complex' unspecified PDB 1RRS 'MutY bound to DNA with an abasic site' unspecified PDB 1VRL 'MutY bound to DNA and adenine free base' unspecified PDB 3FSQ . unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 3FSP _pdbx_database_status.recvd_initial_deposition_date 2009-01-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal ;O'Shea, V.L. ; 1 'Horvath, M.P.' 2 'David, S.S.' 3 # _citation.id primary _citation.title 'Structural illumination of a mutY glycosylase reaction coordinate intermediate' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary ;O'Shea, V.L. ; 1 ? primary 'Cao, S.' 2 ? primary 'Richards, J.L.' 3 ? primary 'Horvath, M.P.' 4 ? primary 'David, S.S.' 5 ? # _cell.entry_id 3FSP _cell.length_a 37.760 _cell.length_b 86.141 _cell.length_c 140.945 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FSP _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'A/G-specific adenine glycosylase' 42092.898 1 3.2.2.- ? ? ? 2 polymer syn "5'-D(*AP*AP*GP*AP*CP*GP*TP*GP*GP*AP*C)-3'" 3407.249 1 ? ? ? ? 3 polymer syn "5'-D(*T*GP*TP*CP*CP*AP*(NRI)P*GP*TP*CP*T)-3'" 3190.088 1 ? ? ? ? 4 non-polymer syn 'IRON/SULFUR CLUSTER' 351.640 1 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 6 water nat water 18.015 101 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMTRETERFPAREFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADED EVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLV TDDIAKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQV PLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVF PGRLVHGGPVEEPYRLAPEDELKAYAFPVSHQRVWREYKEWASGVRPPP ; ;GSHMTRETERFPAREFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADED EVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLV TDDIAKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQV PLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVF PGRLVHGGPVEEPYRLAPEDELKAYAFPVSHQRVWREYKEWASGVRPPP ; A ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DG)(DA)(DC)(DG)(DT)(DG)(DG)(DA)(DC)' AAGACGTGGAC B ? 3 polydeoxyribonucleotide no yes '(DT)(DG)(DT)(DC)(DC)(DA)(NRI)(DG)(DT)(DC)(DT)' TGTCCAXGTCT C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 THR n 1 6 ARG n 1 7 GLU n 1 8 THR n 1 9 GLU n 1 10 ARG n 1 11 PHE n 1 12 PRO n 1 13 ALA n 1 14 ARG n 1 15 GLU n 1 16 PHE n 1 17 GLN n 1 18 ARG n 1 19 ASP n 1 20 LEU n 1 21 LEU n 1 22 ASP n 1 23 TRP n 1 24 PHE n 1 25 ALA n 1 26 ARG n 1 27 GLU n 1 28 ARG n 1 29 ARG n 1 30 ASP n 1 31 LEU n 1 32 PRO n 1 33 TRP n 1 34 ARG n 1 35 LYS n 1 36 ASP n 1 37 ARG n 1 38 ASP n 1 39 PRO n 1 40 TYR n 1 41 LYS n 1 42 VAL n 1 43 TRP n 1 44 VAL n 1 45 SER n 1 46 GLU n 1 47 VAL n 1 48 MET n 1 49 LEU n 1 50 GLN n 1 51 GLN n 1 52 THR n 1 53 ARG n 1 54 VAL n 1 55 GLU n 1 56 THR n 1 57 VAL n 1 58 ILE n 1 59 PRO n 1 60 TYR n 1 61 PHE n 1 62 GLU n 1 63 GLN n 1 64 PHE n 1 65 ILE n 1 66 ASP n 1 67 ARG n 1 68 PHE n 1 69 PRO n 1 70 THR n 1 71 LEU n 1 72 GLU n 1 73 ALA n 1 74 LEU n 1 75 ALA n 1 76 ASP n 1 77 ALA n 1 78 ASP n 1 79 GLU n 1 80 ASP n 1 81 GLU n 1 82 VAL n 1 83 LEU n 1 84 LYS n 1 85 ALA n 1 86 TRP n 1 87 GLU n 1 88 GLY n 1 89 LEU n 1 90 GLY n 1 91 TYR n 1 92 TYR n 1 93 SER n 1 94 ARG n 1 95 VAL n 1 96 ARG n 1 97 ASN n 1 98 LEU n 1 99 HIS n 1 100 ALA n 1 101 ALA n 1 102 VAL n 1 103 LYS n 1 104 GLU n 1 105 VAL n 1 106 LYS n 1 107 THR n 1 108 ARG n 1 109 TYR n 1 110 GLY n 1 111 GLY n 1 112 LYS n 1 113 VAL n 1 114 PRO n 1 115 ASP n 1 116 ASP n 1 117 PRO n 1 118 ASP n 1 119 GLU n 1 120 PHE n 1 121 SER n 1 122 ARG n 1 123 LEU n 1 124 LYS n 1 125 GLY n 1 126 VAL n 1 127 GLY n 1 128 PRO n 1 129 TYR n 1 130 THR n 1 131 VAL n 1 132 GLY n 1 133 ALA n 1 134 VAL n 1 135 LEU n 1 136 SER n 1 137 LEU n 1 138 ALA n 1 139 TYR n 1 140 GLY n 1 141 VAL n 1 142 PRO n 1 143 GLU n 1 144 PRO n 1 145 ALA n 1 146 VAL n 1 147 ASP n 1 148 GLY n 1 149 ASN n 1 150 VAL n 1 151 MET n 1 152 ARG n 1 153 VAL n 1 154 LEU n 1 155 SER n 1 156 ARG n 1 157 LEU n 1 158 PHE n 1 159 LEU n 1 160 VAL n 1 161 THR n 1 162 ASP n 1 163 ASP n 1 164 ILE n 1 165 ALA n 1 166 LYS n 1 167 PRO n 1 168 SER n 1 169 THR n 1 170 ARG n 1 171 LYS n 1 172 ARG n 1 173 PHE n 1 174 GLU n 1 175 GLN n 1 176 ILE n 1 177 VAL n 1 178 ARG n 1 179 GLU n 1 180 ILE n 1 181 MET n 1 182 ALA n 1 183 TYR n 1 184 GLU n 1 185 ASN n 1 186 PRO n 1 187 GLY n 1 188 ALA n 1 189 PHE n 1 190 ASN n 1 191 GLU n 1 192 ALA n 1 193 LEU n 1 194 ILE n 1 195 GLU n 1 196 LEU n 1 197 GLY n 1 198 ALA n 1 199 LEU n 1 200 VAL n 1 201 CYS n 1 202 THR n 1 203 PRO n 1 204 ARG n 1 205 ARG n 1 206 PRO n 1 207 SER n 1 208 CYS n 1 209 LEU n 1 210 LEU n 1 211 CYS n 1 212 PRO n 1 213 VAL n 1 214 GLN n 1 215 ALA n 1 216 TYR n 1 217 CYS n 1 218 GLN n 1 219 ALA n 1 220 PHE n 1 221 ALA n 1 222 GLU n 1 223 GLY n 1 224 VAL n 1 225 ALA n 1 226 GLU n 1 227 GLU n 1 228 LEU n 1 229 PRO n 1 230 VAL n 1 231 LYS n 1 232 MET n 1 233 LYS n 1 234 LYS n 1 235 THR n 1 236 ALA n 1 237 VAL n 1 238 LYS n 1 239 GLN n 1 240 VAL n 1 241 PRO n 1 242 LEU n 1 243 ALA n 1 244 VAL n 1 245 ALA n 1 246 VAL n 1 247 LEU n 1 248 ALA n 1 249 ASP n 1 250 ASP n 1 251 GLU n 1 252 GLY n 1 253 ARG n 1 254 VAL n 1 255 LEU n 1 256 ILE n 1 257 ARG n 1 258 LYS n 1 259 ARG n 1 260 ASP n 1 261 SER n 1 262 THR n 1 263 GLY n 1 264 LEU n 1 265 LEU n 1 266 ALA n 1 267 ASN n 1 268 LEU n 1 269 TRP n 1 270 GLU n 1 271 PHE n 1 272 PRO n 1 273 SER n 1 274 CYS n 1 275 GLU n 1 276 THR n 1 277 ASP n 1 278 GLY n 1 279 ALA n 1 280 ASP n 1 281 GLY n 1 282 LYS n 1 283 GLU n 1 284 LYS n 1 285 LEU n 1 286 GLU n 1 287 GLN n 1 288 MET n 1 289 VAL n 1 290 GLY n 1 291 GLU n 1 292 GLN n 1 293 TYR n 1 294 GLY n 1 295 LEU n 1 296 GLN n 1 297 VAL n 1 298 GLU n 1 299 LEU n 1 300 THR n 1 301 GLU n 1 302 PRO n 1 303 ILE n 1 304 VAL n 1 305 SER n 1 306 PHE n 1 307 GLU n 1 308 HIS n 1 309 ALA n 1 310 PHE n 1 311 SER n 1 312 HIS n 1 313 LEU n 1 314 VAL n 1 315 TRP n 1 316 GLN n 1 317 LEU n 1 318 THR n 1 319 VAL n 1 320 PHE n 1 321 PRO n 1 322 GLY n 1 323 ARG n 1 324 LEU n 1 325 VAL n 1 326 HIS n 1 327 GLY n 1 328 GLY n 1 329 PRO n 1 330 VAL n 1 331 GLU n 1 332 GLU n 1 333 PRO n 1 334 TYR n 1 335 ARG n 1 336 LEU n 1 337 ALA n 1 338 PRO n 1 339 GLU n 1 340 ASP n 1 341 GLU n 1 342 LEU n 1 343 LYS n 1 344 ALA n 1 345 TYR n 1 346 ALA n 1 347 PHE n 1 348 PRO n 1 349 VAL n 1 350 SER n 1 351 HIS n 1 352 GLN n 1 353 ARG n 1 354 VAL n 1 355 TRP n 1 356 ARG n 1 357 GLU n 1 358 TYR n 1 359 LYS n 1 360 GLU n 1 361 TRP n 1 362 ALA n 1 363 SER n 1 364 GLY n 1 365 VAL n 1 366 ARG n 1 367 PRO n 1 368 PRO n 1 369 PRO n 2 1 DA n 2 2 DA n 2 3 DG n 2 4 DA n 2 5 DC n 2 6 DG n 2 7 DT n 2 8 DG n 2 9 DG n 2 10 DA n 2 11 DC n 3 1 DT n 3 2 DG n 3 3 DT n 3 4 DC n 3 5 DC n 3 6 DA n 3 7 NRI n 3 8 DG n 3 9 DT n 3 10 DC n 3 11 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene mutY _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacillus stearothermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1422 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA chemically synthesized with 1N transition state analog' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP P83847_BACST P83847 1 ;MTRETERFPAREFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVL KAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVNGNVMRVLSRLFLVTDD IAKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLA VAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGR LVHGGPVEEPYRLAPEDELKAYAFPVSHQRVWREYKEWASGVRPPP ; 1 ? 2 PDB 3FSP 3FSP 2 AAGACGTGGAC ? ? 3 PDB 3FSP 3FSP 3 TGTCCAXGTCT ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FSP A 4 ? 369 ? P83847 1 ? 366 ? 1 366 2 2 3FSP B 1 ? 11 ? 3FSP 1 ? 11 ? 1 11 3 3 3FSP C 1 ? 11 ? 3FSP 12 ? 22 ? 12 22 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FSP GLY A 1 ? UNP P83847 ? ? 'EXPRESSION TAG' -2 1 1 3FSP SER A 2 ? UNP P83847 ? ? 'EXPRESSION TAG' -1 2 1 3FSP HIS A 3 ? UNP P83847 ? ? 'EXPRESSION TAG' 0 3 1 3FSP ASP A 147 ? UNP P83847 ASN 144 'SEE REMARK 999' 144 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NRI 'DNA linking' . 'PHOSPHORIC ACID MONO-(4-HYDROXY-PYRROLIDIN-3-YLMETHYL) ESTER' ? 'C5 H12 N O5 P' 197.126 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SF4 non-polymer . 'IRON/SULFUR CLUSTER' ? 'Fe4 S4' 351.640 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3FSP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.density_percent_sol 47.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;micro-seeded, 0.5M calcium acetate, 0.1M tris, 14% (w/v) PEG4000, 0.005M beta-mercaptoethanol, 5% (w/v) ethylene glycol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K ; # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'Calcium acetate' ? ? ? 1 2 1 'Tris HCL' ? ? ? 1 3 1 Beta-mercaptoethanol ? ? ? 1 4 1 'Ethylene glycol' ? ? ? 1 5 2 'Calcium acetate' ? ? ? 1 6 2 'Tris HCL' ? ? ? 1 7 2 Beta-mercaptoethanol ? ? ? 1 8 2 'Ethylene glycol' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2008-04-03 _diffrn_detector.details 'KOHZU, SI(111) CRYSTALS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111) CRYSTALS' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11583 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 12.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 12.3.1 _diffrn_source.pdbx_wavelength 1.11583 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3FSP _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.200 _reflns.number_obs 24099 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.05600 _reflns.pdbx_Rsym_value 0.05600 _reflns.pdbx_netI_over_sigmaI 15.6000 _reflns.B_iso_Wilson_estimate 57.80 _reflns.pdbx_redundancy 4.600 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.38300 _reflns_shell.pdbx_Rsym_value 0.38300 _reflns_shell.meanI_over_sigI_obs 3.200 _reflns_shell.pdbx_redundancy 4.50 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3FSP _refine.ls_number_reflns_obs 24041 _refine.ls_number_reflns_all 24043 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.246 _refine.ls_d_res_high 2.202 _refine.ls_percent_reflns_obs 99.71 _refine.ls_R_factor_obs 0.2224 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2224 _refine.ls_R_factor_R_free 0.2541 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.84 _refine.ls_number_reflns_R_free 1164 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 54.05 _refine.aniso_B[1][1] -3.2271 _refine.aniso_B[2][2] -1.1095 _refine.aniso_B[3][3] 1.9993 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;ACTIVE SITE RESIDUES AND DNA NUCLEOTIDES REMOVED FROM MR SEARCH MODEL; TORSION ANGLE SIMULATED ANNEALING, POSITIONAL, RESTRAINED INDIVIDUAL B-VALUE REFINEMENT; MODEL ADJUSTMENTS IN CONTEXT OF SIGMA-A WEIGHTED COMPOSITE SA-OMIT MAPS ; _refine.pdbx_starting_model 'PDB ENTRY 1RRQ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model OVERALL _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'RANDOM; EXTENDED TO INCLUDE 5% OF NEW REFLECTIONS, AFTER INHERITING CROSS-VALIDATION SELECTION FROM PDB ENTRY 1RRQ' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 3FSP _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs 0.32 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.36 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2804 _refine_hist.pdbx_number_atoms_nucleic_acid 463 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 3378 _refine_hist.d_res_high 2.202 _refine_hist.d_res_low 41.246 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.070 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.665 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 5.480 ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 7.026 ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 6.499 ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 7.957 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.2020 _refine_ls_shell.d_res_low 2.3022 _refine_ls_shell.number_reflns_R_work 2741 _refine_ls_shell.R_factor_R_work 0.2999 _refine_ls_shell.percent_reflns_obs 99 _refine_ls_shell.R_factor_R_free 0.3272 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.2 _refine_ls_shell.number_reflns_R_free 152 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 FS4b.cif FS4b.cif 'X-RAY DIFFRACTION' 2 NRI_smiles_from_og1n23a.cif NRI_smiles_from_og1n23a.cif 'X-RAY DIFFRACTION' 3 NRI.edits NRI.edits 'X-RAY DIFFRACTION' 4 metal_g1n11a_26.edits metal_g1n11a_26.edits # _struct.entry_id 3FSP _struct.title 'MutY adenine glycosylase bound to a transition state analog (1N) paired with dG in duplexed DNA' _struct.pdbx_descriptor 'A/G-specific adenine glycosylase (E.C.3.2.2.-)/DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FSP _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, DNA GLYCOSYLASE, TRANSITION STATE ANALOG, DNA repair, Glycosidase, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 12 ? ARG A 28 ? PRO A 9 ARG A 25 1 ? 17 HELX_P HELX_P2 2 LEU A 31 ? LYS A 35 ? LEU A 28 LYS A 32 5 ? 5 HELX_P HELX_P3 3 ASP A 38 ? LEU A 49 ? ASP A 35 LEU A 46 1 ? 12 HELX_P HELX_P4 4 ARG A 53 ? PHE A 68 ? ARG A 50 PHE A 65 1 ? 16 HELX_P HELX_P5 5 THR A 70 ? ASP A 76 ? THR A 67 ASP A 73 1 ? 7 HELX_P HELX_P6 6 ASP A 78 ? ALA A 85 ? ASP A 75 ALA A 82 1 ? 8 HELX_P HELX_P7 7 TYR A 92 ? GLY A 110 ? TYR A 89 GLY A 107 1 ? 19 HELX_P HELX_P8 8 ASP A 116 ? ARG A 122 ? ASP A 113 ARG A 119 1 ? 7 HELX_P HELX_P9 9 GLY A 127 ? TYR A 139 ? GLY A 124 TYR A 136 1 ? 13 HELX_P HELX_P10 10 ASP A 147 ? PHE A 158 ? ASP A 144 PHE A 155 1 ? 12 HELX_P HELX_P11 11 LYS A 166 ? MET A 181 ? LYS A 163 MET A 178 1 ? 16 HELX_P HELX_P12 12 ASN A 185 ? VAL A 200 ? ASN A 182 VAL A 197 1 ? 16 HELX_P HELX_P13 13 CYS A 217 ? GLY A 223 ? CYS A 214 GLY A 220 1 ? 7 HELX_P HELX_P14 14 VAL A 224 ? LEU A 228 ? VAL A 221 LEU A 225 5 ? 5 HELX_P HELX_P15 15 GLY A 281 ? VAL A 289 ? GLY A 278 VAL A 286 1 ? 9 HELX_P HELX_P16 16 PRO A 338 ? TYR A 345 ? PRO A 335 TYR A 342 5 ? 8 HELX_P HELX_P17 17 PRO A 348 ? GLU A 360 ? PRO A 345 GLU A 357 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? C DA 6 "O3'" ? ? ? 1_555 C NRI 7 P ? ? C DA 17 C NRI 18 1_555 ? ? ? ? ? ? ? 1.618 ? covale2 covale both ? C NRI 7 "O3'" ? ? ? 1_555 C DG 8 P ? ? C NRI 18 C DG 19 1_555 ? ? ? ? ? ? ? 1.624 ? metalc1 metalc ? ? A SER 121 O ? ? ? 1_555 E CA . CA ? ? A SER 118 A CA 501 1_555 ? ? ? ? ? ? ? 2.227 ? metalc2 metalc ? ? A SER 121 OG ? ? ? 1_555 E CA . CA ? ? A SER 118 A CA 501 1_555 ? ? ? ? ? ? ? 2.484 ? metalc3 metalc ? ? A VAL 126 O ? ? ? 1_555 E CA . CA ? ? A VAL 123 A CA 501 1_555 ? ? ? ? ? ? ? 2.420 ? metalc4 metalc ? ? A CYS 201 SG ? ? ? 1_555 D SF4 . FE3 ? ? A CYS 198 A SF4 400 1_555 ? ? ? ? ? ? ? 2.190 ? metalc5 metalc ? ? A CYS 208 SG ? ? ? 1_555 D SF4 . FE2 ? ? A CYS 205 A SF4 400 1_555 ? ? ? ? ? ? ? 2.366 ? metalc6 metalc ? ? A CYS 211 SG ? ? ? 1_555 D SF4 . FE4 ? ? A CYS 208 A SF4 400 1_555 ? ? ? ? ? ? ? 2.207 ? metalc7 metalc ? ? A CYS 217 SG ? ? ? 1_555 D SF4 . FE1 ? ? A CYS 214 A SF4 400 1_555 ? ? ? ? ? ? ? 2.311 ? metalc8 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 501 A HOH 467 1_555 ? ? ? ? ? ? ? 2.963 ? metalc9 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 501 C HOH 451 1_555 ? ? ? ? ? ? ? 2.473 ? metalc10 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 501 A HOH 403 1_555 ? ? ? ? ? ? ? 2.316 ? metalc11 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 501 C HOH 450 1_555 ? ? ? ? ? ? ? 2.847 ? hydrog1 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 11 N3 ? ? B DA 2 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 11 O4 ? ? B DA 2 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 3 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 3 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 3 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 4 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 4 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 8 N1 ? ? B DC 5 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 8 O6 ? ? B DC 5 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 8 N2 ? ? B DC 5 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 7 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 7 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 8 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 8 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 8 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DG 9 N1 A ? ? 1_555 C DC 4 N3 ? ? B DG 9 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DG 9 N2 A ? ? 1_555 C DC 4 O2 ? ? B DG 9 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DG 9 O6 A ? ? 1_555 C DC 4 N4 ? ? B DG 9 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DG 9 N2 A ? ? 1_555 C DC 5 O2 ? ? B DG 9 C DC 16 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? hydrog20 hydrog ? ? B DA 10 N1 A ? ? 1_555 C DT 3 N3 ? ? B DA 10 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DA 10 N6 A ? ? 1_555 C DT 3 O4 ? ? B DA 10 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 11 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 11 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 11 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 228 A . ? LEU 225 A PRO 229 A ? PRO 226 A 1 -3.83 2 GLU 332 A . ? GLU 329 A PRO 333 A ? PRO 330 A 1 8.22 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 273 ? GLU A 275 ? SER A 270 GLU A 272 A 2 LYS A 238 ? ALA A 248 ? LYS A 235 ALA A 245 A 3 LEU A 313 ? ARG A 323 ? LEU A 310 ARG A 320 A 4 SER A 305 ? ALA A 309 ? SER A 302 ALA A 306 B 1 VAL A 254 ? ARG A 257 ? VAL A 251 ARG A 254 B 2 TYR A 334 ? ALA A 337 ? TYR A 331 ALA A 334 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O CYS A 274 ? O CYS A 271 N ALA A 243 ? N ALA A 240 A 2 3 N VAL A 240 ? N VAL A 237 O GLN A 316 ? O GLN A 313 A 3 4 O TRP A 315 ? O TRP A 312 N HIS A 308 ? N HIS A 305 B 1 2 N VAL A 254 ? N VAL A 251 O ALA A 337 ? O ALA A 334 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SF4 A 400' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CA A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ARG A 156 ? ARG A 153 . ? 1_555 ? 2 AC1 7 CYS A 201 ? CYS A 198 . ? 1_555 ? 3 AC1 7 CYS A 208 ? CYS A 205 . ? 1_555 ? 4 AC1 7 CYS A 211 ? CYS A 208 . ? 1_555 ? 5 AC1 7 GLN A 214 ? GLN A 211 . ? 1_555 ? 6 AC1 7 CYS A 217 ? CYS A 214 . ? 1_555 ? 7 AC1 7 ALA A 225 ? ALA A 222 . ? 1_555 ? 8 AC2 6 SER A 121 ? SER A 118 . ? 1_555 ? 9 AC2 6 VAL A 126 ? VAL A 123 . ? 1_555 ? 10 AC2 6 HOH F . ? HOH A 403 . ? 1_555 ? 11 AC2 6 HOH F . ? HOH A 467 . ? 1_555 ? 12 AC2 6 HOH H . ? HOH C 450 . ? 1_555 ? 13 AC2 6 HOH H . ? HOH C 451 . ? 1_555 ? # _database_PDB_matrix.entry_id 3FSP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FSP _atom_sites.fract_transf_matrix[1][1] 0.026483 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011609 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007095 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA FE N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 HIS 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 THR 5 2 ? ? ? A . n A 1 6 ARG 6 3 ? ? ? A . n A 1 7 GLU 7 4 ? ? ? A . n A 1 8 THR 8 5 ? ? ? A . n A 1 9 GLU 9 6 ? ? ? A . n A 1 10 ARG 10 7 ? ? ? A . n A 1 11 PHE 11 8 8 PHE PHE A . n A 1 12 PRO 12 9 9 PRO PRO A . n A 1 13 ALA 13 10 10 ALA ALA A . n A 1 14 ARG 14 11 11 ARG ARG A . n A 1 15 GLU 15 12 12 GLU GLU A . n A 1 16 PHE 16 13 13 PHE PHE A . n A 1 17 GLN 17 14 14 GLN GLN A . n A 1 18 ARG 18 15 15 ARG ARG A . n A 1 19 ASP 19 16 16 ASP ASP A . n A 1 20 LEU 20 17 17 LEU LEU A . n A 1 21 LEU 21 18 18 LEU LEU A . n A 1 22 ASP 22 19 19 ASP ASP A . n A 1 23 TRP 23 20 20 TRP TRP A . n A 1 24 PHE 24 21 21 PHE PHE A . n A 1 25 ALA 25 22 22 ALA ALA A . n A 1 26 ARG 26 23 23 ARG ARG A . n A 1 27 GLU 27 24 24 GLU GLU A . n A 1 28 ARG 28 25 25 ARG ARG A . n A 1 29 ARG 29 26 26 ARG ARG A . n A 1 30 ASP 30 27 27 ASP ASP A . n A 1 31 LEU 31 28 28 LEU LEU A . n A 1 32 PRO 32 29 29 PRO PRO A . n A 1 33 TRP 33 30 30 TRP TRP A . n A 1 34 ARG 34 31 31 ARG ARG A . n A 1 35 LYS 35 32 32 LYS LYS A . n A 1 36 ASP 36 33 33 ASP ASP A . n A 1 37 ARG 37 34 34 ARG ARG A . n A 1 38 ASP 38 35 35 ASP ASP A . n A 1 39 PRO 39 36 36 PRO PRO A . n A 1 40 TYR 40 37 37 TYR TYR A . n A 1 41 LYS 41 38 38 LYS LYS A . n A 1 42 VAL 42 39 39 VAL VAL A . n A 1 43 TRP 43 40 40 TRP TRP A . n A 1 44 VAL 44 41 41 VAL VAL A . n A 1 45 SER 45 42 42 SER SER A . n A 1 46 GLU 46 43 43 GLU GLU A . n A 1 47 VAL 47 44 44 VAL VAL A . n A 1 48 MET 48 45 45 MET MET A . n A 1 49 LEU 49 46 46 LEU LEU A . n A 1 50 GLN 50 47 47 GLN GLN A . n A 1 51 GLN 51 48 48 GLN GLN A . n A 1 52 THR 52 49 49 THR THR A . n A 1 53 ARG 53 50 50 ARG ARG A . n A 1 54 VAL 54 51 51 VAL VAL A . n A 1 55 GLU 55 52 52 GLU GLU A . n A 1 56 THR 56 53 53 THR THR A . n A 1 57 VAL 57 54 54 VAL VAL A . n A 1 58 ILE 58 55 55 ILE ILE A . n A 1 59 PRO 59 56 56 PRO PRO A . n A 1 60 TYR 60 57 57 TYR TYR A . n A 1 61 PHE 61 58 58 PHE PHE A . n A 1 62 GLU 62 59 59 GLU GLU A . n A 1 63 GLN 63 60 60 GLN GLN A . n A 1 64 PHE 64 61 61 PHE PHE A . n A 1 65 ILE 65 62 62 ILE ILE A . n A 1 66 ASP 66 63 63 ASP ASP A . n A 1 67 ARG 67 64 64 ARG ARG A . n A 1 68 PHE 68 65 65 PHE PHE A . n A 1 69 PRO 69 66 66 PRO PRO A . n A 1 70 THR 70 67 67 THR THR A . n A 1 71 LEU 71 68 68 LEU LEU A . n A 1 72 GLU 72 69 69 GLU GLU A . n A 1 73 ALA 73 70 70 ALA ALA A . n A 1 74 LEU 74 71 71 LEU LEU A . n A 1 75 ALA 75 72 72 ALA ALA A . n A 1 76 ASP 76 73 73 ASP ASP A . n A 1 77 ALA 77 74 74 ALA ALA A . n A 1 78 ASP 78 75 75 ASP ASP A . n A 1 79 GLU 79 76 76 GLU GLU A . n A 1 80 ASP 80 77 77 ASP ASP A . n A 1 81 GLU 81 78 78 GLU GLU A . n A 1 82 VAL 82 79 79 VAL VAL A . n A 1 83 LEU 83 80 80 LEU LEU A . n A 1 84 LYS 84 81 81 LYS LYS A . n A 1 85 ALA 85 82 82 ALA ALA A . n A 1 86 TRP 86 83 83 TRP TRP A . n A 1 87 GLU 87 84 84 GLU GLU A . n A 1 88 GLY 88 85 85 GLY GLY A . n A 1 89 LEU 89 86 86 LEU LEU A . n A 1 90 GLY 90 87 87 GLY GLY A . n A 1 91 TYR 91 88 88 TYR TYR A . n A 1 92 TYR 92 89 89 TYR TYR A . n A 1 93 SER 93 90 90 SER SER A . n A 1 94 ARG 94 91 91 ARG ARG A . n A 1 95 VAL 95 92 92 VAL VAL A . n A 1 96 ARG 96 93 93 ARG ARG A . n A 1 97 ASN 97 94 94 ASN ASN A . n A 1 98 LEU 98 95 95 LEU LEU A . n A 1 99 HIS 99 96 96 HIS HIS A . n A 1 100 ALA 100 97 97 ALA ALA A . n A 1 101 ALA 101 98 98 ALA ALA A . n A 1 102 VAL 102 99 99 VAL VAL A . n A 1 103 LYS 103 100 100 LYS LYS A . n A 1 104 GLU 104 101 101 GLU GLU A . n A 1 105 VAL 105 102 102 VAL VAL A . n A 1 106 LYS 106 103 103 LYS LYS A . n A 1 107 THR 107 104 104 THR THR A . n A 1 108 ARG 108 105 105 ARG ARG A . n A 1 109 TYR 109 106 106 TYR TYR A . n A 1 110 GLY 110 107 107 GLY GLY A . n A 1 111 GLY 111 108 108 GLY GLY A . n A 1 112 LYS 112 109 109 LYS LYS A . n A 1 113 VAL 113 110 110 VAL VAL A . n A 1 114 PRO 114 111 111 PRO PRO A . n A 1 115 ASP 115 112 112 ASP ASP A . n A 1 116 ASP 116 113 113 ASP ASP A . n A 1 117 PRO 117 114 114 PRO PRO A . n A 1 118 ASP 118 115 115 ASP ASP A . n A 1 119 GLU 119 116 116 GLU GLU A . n A 1 120 PHE 120 117 117 PHE PHE A . n A 1 121 SER 121 118 118 SER SER A . n A 1 122 ARG 122 119 119 ARG ARG A . n A 1 123 LEU 123 120 120 LEU LEU A . n A 1 124 LYS 124 121 121 LYS LYS A . n A 1 125 GLY 125 122 122 GLY GLY A . n A 1 126 VAL 126 123 123 VAL VAL A . n A 1 127 GLY 127 124 124 GLY GLY A . n A 1 128 PRO 128 125 125 PRO PRO A . n A 1 129 TYR 129 126 126 TYR TYR A . n A 1 130 THR 130 127 127 THR THR A . n A 1 131 VAL 131 128 128 VAL VAL A . n A 1 132 GLY 132 129 129 GLY GLY A . n A 1 133 ALA 133 130 130 ALA ALA A . n A 1 134 VAL 134 131 131 VAL VAL A . n A 1 135 LEU 135 132 132 LEU LEU A . n A 1 136 SER 136 133 133 SER SER A . n A 1 137 LEU 137 134 134 LEU LEU A . n A 1 138 ALA 138 135 135 ALA ALA A . n A 1 139 TYR 139 136 136 TYR TYR A . n A 1 140 GLY 140 137 137 GLY GLY A . n A 1 141 VAL 141 138 138 VAL VAL A . n A 1 142 PRO 142 139 139 PRO PRO A . n A 1 143 GLU 143 140 140 GLU GLU A . n A 1 144 PRO 144 141 141 PRO PRO A . n A 1 145 ALA 145 142 142 ALA ALA A . n A 1 146 VAL 146 143 143 VAL VAL A . n A 1 147 ASP 147 144 144 ASP ASP A . n A 1 148 GLY 148 145 145 GLY GLY A . n A 1 149 ASN 149 146 146 ASN ASN A . n A 1 150 VAL 150 147 147 VAL VAL A . n A 1 151 MET 151 148 148 MET MET A . n A 1 152 ARG 152 149 149 ARG ARG A . n A 1 153 VAL 153 150 150 VAL VAL A . n A 1 154 LEU 154 151 151 LEU LEU A . n A 1 155 SER 155 152 152 SER SER A . n A 1 156 ARG 156 153 153 ARG ARG A . n A 1 157 LEU 157 154 154 LEU LEU A . n A 1 158 PHE 158 155 155 PHE PHE A . n A 1 159 LEU 159 156 156 LEU LEU A . n A 1 160 VAL 160 157 157 VAL VAL A . n A 1 161 THR 161 158 158 THR THR A . n A 1 162 ASP 162 159 159 ASP ASP A . n A 1 163 ASP 163 160 160 ASP ASP A . n A 1 164 ILE 164 161 161 ILE ILE A . n A 1 165 ALA 165 162 162 ALA ALA A . n A 1 166 LYS 166 163 163 LYS LYS A . n A 1 167 PRO 167 164 164 PRO PRO A . n A 1 168 SER 168 165 165 SER SER A . n A 1 169 THR 169 166 166 THR THR A . n A 1 170 ARG 170 167 167 ARG ARG A . n A 1 171 LYS 171 168 168 LYS LYS A . n A 1 172 ARG 172 169 169 ARG ARG A . n A 1 173 PHE 173 170 170 PHE PHE A . n A 1 174 GLU 174 171 171 GLU GLU A . n A 1 175 GLN 175 172 172 GLN GLN A . n A 1 176 ILE 176 173 173 ILE ILE A . n A 1 177 VAL 177 174 174 VAL VAL A . n A 1 178 ARG 178 175 175 ARG ARG A . n A 1 179 GLU 179 176 176 GLU GLU A . n A 1 180 ILE 180 177 177 ILE ILE A . n A 1 181 MET 181 178 178 MET MET A . n A 1 182 ALA 182 179 179 ALA ALA A . n A 1 183 TYR 183 180 180 TYR TYR A . n A 1 184 GLU 184 181 181 GLU GLU A . n A 1 185 ASN 185 182 182 ASN ASN A . n A 1 186 PRO 186 183 183 PRO PRO A . n A 1 187 GLY 187 184 184 GLY GLY A . n A 1 188 ALA 188 185 185 ALA ALA A . n A 1 189 PHE 189 186 186 PHE PHE A . n A 1 190 ASN 190 187 187 ASN ASN A . n A 1 191 GLU 191 188 188 GLU GLU A . n A 1 192 ALA 192 189 189 ALA ALA A . n A 1 193 LEU 193 190 190 LEU LEU A . n A 1 194 ILE 194 191 191 ILE ILE A . n A 1 195 GLU 195 192 192 GLU GLU A . n A 1 196 LEU 196 193 193 LEU LEU A . n A 1 197 GLY 197 194 194 GLY GLY A . n A 1 198 ALA 198 195 195 ALA ALA A . n A 1 199 LEU 199 196 196 LEU LEU A . n A 1 200 VAL 200 197 197 VAL VAL A . n A 1 201 CYS 201 198 198 CYS CYS A . n A 1 202 THR 202 199 199 THR THR A . n A 1 203 PRO 203 200 200 PRO PRO A . n A 1 204 ARG 204 201 201 ARG ARG A . n A 1 205 ARG 205 202 202 ARG ARG A . n A 1 206 PRO 206 203 203 PRO PRO A . n A 1 207 SER 207 204 204 SER SER A . n A 1 208 CYS 208 205 205 CYS CYS A . n A 1 209 LEU 209 206 206 LEU LEU A . n A 1 210 LEU 210 207 207 LEU LEU A . n A 1 211 CYS 211 208 208 CYS CYS A . n A 1 212 PRO 212 209 209 PRO PRO A . n A 1 213 VAL 213 210 210 VAL VAL A . n A 1 214 GLN 214 211 211 GLN GLN A . n A 1 215 ALA 215 212 212 ALA ALA A . n A 1 216 TYR 216 213 213 TYR TYR A . n A 1 217 CYS 217 214 214 CYS CYS A . n A 1 218 GLN 218 215 215 GLN GLN A . n A 1 219 ALA 219 216 216 ALA ALA A . n A 1 220 PHE 220 217 217 PHE PHE A . n A 1 221 ALA 221 218 218 ALA ALA A . n A 1 222 GLU 222 219 219 GLU GLU A . n A 1 223 GLY 223 220 220 GLY GLY A . n A 1 224 VAL 224 221 221 VAL VAL A . n A 1 225 ALA 225 222 222 ALA ALA A . n A 1 226 GLU 226 223 223 GLU GLU A . n A 1 227 GLU 227 224 224 GLU GLU A . n A 1 228 LEU 228 225 225 LEU LEU A . n A 1 229 PRO 229 226 226 PRO PRO A . n A 1 230 VAL 230 227 227 VAL VAL A . n A 1 231 LYS 231 228 228 LYS LYS A . n A 1 232 MET 232 229 229 MET MET A . n A 1 233 LYS 233 230 230 LYS LYS A . n A 1 234 LYS 234 231 231 LYS LYS A . n A 1 235 THR 235 232 232 THR THR A . n A 1 236 ALA 236 233 233 ALA ALA A . n A 1 237 VAL 237 234 234 VAL VAL A . n A 1 238 LYS 238 235 235 LYS LYS A . n A 1 239 GLN 239 236 236 GLN GLN A . n A 1 240 VAL 240 237 237 VAL VAL A . n A 1 241 PRO 241 238 238 PRO PRO A . n A 1 242 LEU 242 239 239 LEU LEU A . n A 1 243 ALA 243 240 240 ALA ALA A . n A 1 244 VAL 244 241 241 VAL VAL A . n A 1 245 ALA 245 242 242 ALA ALA A . n A 1 246 VAL 246 243 243 VAL VAL A . n A 1 247 LEU 247 244 244 LEU LEU A . n A 1 248 ALA 248 245 245 ALA ALA A . n A 1 249 ASP 249 246 246 ASP ASP A . n A 1 250 ASP 250 247 247 ASP ASP A . n A 1 251 GLU 251 248 248 GLU GLU A . n A 1 252 GLY 252 249 249 GLY GLY A . n A 1 253 ARG 253 250 250 ARG ARG A . n A 1 254 VAL 254 251 251 VAL VAL A . n A 1 255 LEU 255 252 252 LEU LEU A . n A 1 256 ILE 256 253 253 ILE ILE A . n A 1 257 ARG 257 254 254 ARG ARG A . n A 1 258 LYS 258 255 255 LYS LYS A . n A 1 259 ARG 259 256 256 ARG ARG A . n A 1 260 ASP 260 257 257 ASP ASP A . n A 1 261 SER 261 258 258 SER SER A . n A 1 262 THR 262 259 259 THR THR A . n A 1 263 GLY 263 260 260 GLY GLY A . n A 1 264 LEU 264 261 261 LEU LEU A . n A 1 265 LEU 265 262 262 LEU LEU A . n A 1 266 ALA 266 263 263 ALA ALA A . n A 1 267 ASN 267 264 264 ASN ASN A . n A 1 268 LEU 268 265 265 LEU LEU A . n A 1 269 TRP 269 266 266 TRP TRP A . n A 1 270 GLU 270 267 267 GLU GLU A . n A 1 271 PHE 271 268 268 PHE PHE A . n A 1 272 PRO 272 269 269 PRO PRO A . n A 1 273 SER 273 270 270 SER SER A . n A 1 274 CYS 274 271 271 CYS CYS A . n A 1 275 GLU 275 272 272 GLU GLU A . n A 1 276 THR 276 273 273 THR THR A . n A 1 277 ASP 277 274 274 ASP ASP A . n A 1 278 GLY 278 275 275 GLY GLY A . n A 1 279 ALA 279 276 276 ALA ALA A . n A 1 280 ASP 280 277 277 ASP ASP A . n A 1 281 GLY 281 278 278 GLY GLY A . n A 1 282 LYS 282 279 279 LYS LYS A . n A 1 283 GLU 283 280 280 GLU GLU A . n A 1 284 LYS 284 281 281 LYS LYS A . n A 1 285 LEU 285 282 282 LEU LEU A . n A 1 286 GLU 286 283 283 GLU GLU A . n A 1 287 GLN 287 284 284 GLN GLN A . n A 1 288 MET 288 285 285 MET MET A . n A 1 289 VAL 289 286 286 VAL VAL A . n A 1 290 GLY 290 287 287 GLY GLY A . n A 1 291 GLU 291 288 288 GLU GLU A . n A 1 292 GLN 292 289 289 GLN GLN A . n A 1 293 TYR 293 290 290 TYR TYR A . n A 1 294 GLY 294 291 291 GLY GLY A . n A 1 295 LEU 295 292 292 LEU LEU A . n A 1 296 GLN 296 293 293 GLN GLN A . n A 1 297 VAL 297 294 294 VAL VAL A . n A 1 298 GLU 298 295 295 GLU GLU A . n A 1 299 LEU 299 296 296 LEU LEU A . n A 1 300 THR 300 297 297 THR THR A . n A 1 301 GLU 301 298 298 GLU GLU A . n A 1 302 PRO 302 299 299 PRO PRO A . n A 1 303 ILE 303 300 300 ILE ILE A . n A 1 304 VAL 304 301 301 VAL VAL A . n A 1 305 SER 305 302 302 SER SER A . n A 1 306 PHE 306 303 303 PHE PHE A . n A 1 307 GLU 307 304 304 GLU GLU A . n A 1 308 HIS 308 305 305 HIS HIS A . n A 1 309 ALA 309 306 306 ALA ALA A . n A 1 310 PHE 310 307 307 PHE PHE A . n A 1 311 SER 311 308 308 SER SER A . n A 1 312 HIS 312 309 309 HIS HIS A . n A 1 313 LEU 313 310 310 LEU LEU A . n A 1 314 VAL 314 311 311 VAL VAL A . n A 1 315 TRP 315 312 312 TRP TRP A . n A 1 316 GLN 316 313 313 GLN GLN A . n A 1 317 LEU 317 314 314 LEU LEU A . n A 1 318 THR 318 315 315 THR THR A . n A 1 319 VAL 319 316 316 VAL VAL A . n A 1 320 PHE 320 317 317 PHE PHE A . n A 1 321 PRO 321 318 318 PRO PRO A . n A 1 322 GLY 322 319 319 GLY GLY A . n A 1 323 ARG 323 320 320 ARG ARG A . n A 1 324 LEU 324 321 321 LEU LEU A . n A 1 325 VAL 325 322 322 VAL VAL A . n A 1 326 HIS 326 323 323 HIS HIS A . n A 1 327 GLY 327 324 324 GLY GLY A . n A 1 328 GLY 328 325 325 GLY GLY A . n A 1 329 PRO 329 326 326 PRO PRO A . n A 1 330 VAL 330 327 327 VAL VAL A . n A 1 331 GLU 331 328 328 GLU GLU A . n A 1 332 GLU 332 329 329 GLU GLU A . n A 1 333 PRO 333 330 330 PRO PRO A . n A 1 334 TYR 334 331 331 TYR TYR A . n A 1 335 ARG 335 332 332 ARG ARG A . n A 1 336 LEU 336 333 333 LEU LEU A . n A 1 337 ALA 337 334 334 ALA ALA A . n A 1 338 PRO 338 335 335 PRO PRO A . n A 1 339 GLU 339 336 336 GLU GLU A . n A 1 340 ASP 340 337 337 ASP ASP A . n A 1 341 GLU 341 338 338 GLU GLU A . n A 1 342 LEU 342 339 339 LEU LEU A . n A 1 343 LYS 343 340 340 LYS LYS A . n A 1 344 ALA 344 341 341 ALA ALA A . n A 1 345 TYR 345 342 342 TYR TYR A . n A 1 346 ALA 346 343 343 ALA ALA A . n A 1 347 PHE 347 344 344 PHE PHE A . n A 1 348 PRO 348 345 345 PRO PRO A . n A 1 349 VAL 349 346 346 VAL VAL A . n A 1 350 SER 350 347 347 SER SER A . n A 1 351 HIS 351 348 348 HIS HIS A . n A 1 352 GLN 352 349 349 GLN GLN A . n A 1 353 ARG 353 350 350 ARG ARG A . n A 1 354 VAL 354 351 351 VAL VAL A . n A 1 355 TRP 355 352 352 TRP TRP A . n A 1 356 ARG 356 353 353 ARG ARG A . n A 1 357 GLU 357 354 354 GLU GLU A . n A 1 358 TYR 358 355 355 TYR TYR A . n A 1 359 LYS 359 356 356 LYS LYS A . n A 1 360 GLU 360 357 357 GLU GLU A . n A 1 361 TRP 361 358 358 TRP TRP A . n A 1 362 ALA 362 359 359 ALA ALA A . n A 1 363 SER 363 360 360 SER SER A . n A 1 364 GLY 364 361 ? ? ? A . n A 1 365 VAL 365 362 ? ? ? A . n A 1 366 ARG 366 363 ? ? ? A . n A 1 367 PRO 367 364 ? ? ? A . n A 1 368 PRO 368 365 ? ? ? A . n A 1 369 PRO 369 366 ? ? ? A . n B 2 1 DA 1 1 1 DA DA B . n B 2 2 DA 2 2 2 DA DA B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DC 5 5 5 DC DC B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DT 7 7 7 DT DT B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DG 9 9 9 DG DG B . n B 2 10 DA 10 10 10 DA DA B . n B 2 11 DC 11 11 11 DC DC B . n C 3 1 DT 1 12 ? ? ? C . n C 3 2 DG 2 13 13 DG DG C . n C 3 3 DT 3 14 14 DT DT C . n C 3 4 DC 4 15 15 DC DC C . n C 3 5 DC 5 16 16 DC DC C . n C 3 6 DA 6 17 17 DA DA C . n C 3 7 NRI 7 18 18 NRI NRI C . n C 3 8 DG 8 19 19 DG DG C . n C 3 9 DT 9 20 20 DT DT C . n C 3 10 DC 10 21 21 DC DC C . n C 3 11 DT 11 22 22 DT DT C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SF4 1 400 400 SF4 SF4 A . E 5 CA 1 501 501 CA CA A . F 6 HOH 1 401 401 HOH HOH A . F 6 HOH 2 402 402 HOH HOH A . F 6 HOH 3 403 403 HOH HOH A . F 6 HOH 4 404 404 HOH HOH A . F 6 HOH 5 405 405 HOH HOH A . F 6 HOH 6 407 407 HOH HOH A . F 6 HOH 7 409 409 HOH HOH A . F 6 HOH 8 410 410 HOH HOH A . F 6 HOH 9 411 411 HOH HOH A . F 6 HOH 10 412 412 HOH HOH A . F 6 HOH 11 414 414 HOH HOH A . F 6 HOH 12 415 415 HOH HOH A . F 6 HOH 13 418 418 HOH HOH A . F 6 HOH 14 420 420 HOH HOH A . F 6 HOH 15 422 422 HOH HOH A . F 6 HOH 16 423 423 HOH HOH A . F 6 HOH 17 424 424 HOH HOH A . F 6 HOH 18 425 425 HOH HOH A . F 6 HOH 19 426 426 HOH HOH A . F 6 HOH 20 428 428 HOH HOH A . F 6 HOH 21 429 429 HOH HOH A . F 6 HOH 22 430 430 HOH HOH A . F 6 HOH 23 431 431 HOH HOH A . F 6 HOH 24 432 432 HOH HOH A . F 6 HOH 25 433 433 HOH HOH A . F 6 HOH 26 434 434 HOH HOH A . F 6 HOH 27 435 435 HOH HOH A . F 6 HOH 28 436 436 HOH HOH A . F 6 HOH 29 437 437 HOH HOH A . F 6 HOH 30 438 438 HOH HOH A . F 6 HOH 31 440 440 HOH HOH A . F 6 HOH 32 441 441 HOH HOH A . F 6 HOH 33 443 443 HOH HOH A . F 6 HOH 34 444 444 HOH HOH A . F 6 HOH 35 447 447 HOH HOH A . F 6 HOH 36 448 448 HOH HOH A . F 6 HOH 37 449 449 HOH HOH A . F 6 HOH 38 452 452 HOH HOH A . F 6 HOH 39 453 453 HOH HOH A . F 6 HOH 40 454 454 HOH HOH A . F 6 HOH 41 455 455 HOH HOH A . F 6 HOH 42 457 457 HOH HOH A . F 6 HOH 43 459 459 HOH HOH A . F 6 HOH 44 460 460 HOH HOH A . F 6 HOH 45 461 461 HOH HOH A . F 6 HOH 46 464 464 HOH HOH A . F 6 HOH 47 465 465 HOH HOH A . F 6 HOH 48 466 466 HOH HOH A . F 6 HOH 49 467 467 HOH HOH A . F 6 HOH 50 468 468 HOH HOH A . F 6 HOH 51 469 469 HOH HOH A . F 6 HOH 52 470 470 HOH HOH A . F 6 HOH 53 471 471 HOH HOH A . F 6 HOH 54 472 472 HOH HOH A . F 6 HOH 55 473 473 HOH HOH A . F 6 HOH 56 474 474 HOH HOH A . F 6 HOH 57 475 475 HOH HOH A . F 6 HOH 58 476 476 HOH HOH A . F 6 HOH 59 477 477 HOH HOH A . F 6 HOH 60 478 478 HOH HOH A . F 6 HOH 61 479 479 HOH HOH A . F 6 HOH 62 480 480 HOH HOH A . F 6 HOH 63 481 481 HOH HOH A . F 6 HOH 64 482 482 HOH HOH A . F 6 HOH 65 483 483 HOH HOH A . F 6 HOH 66 484 484 HOH HOH A . F 6 HOH 67 485 485 HOH HOH A . F 6 HOH 68 486 486 HOH HOH A . F 6 HOH 69 487 487 HOH HOH A . F 6 HOH 70 488 488 HOH HOH A . F 6 HOH 71 491 491 HOH HOH A . F 6 HOH 72 493 493 HOH HOH A . F 6 HOH 73 496 496 HOH HOH A . F 6 HOH 74 498 498 HOH HOH A . F 6 HOH 75 499 499 HOH HOH A . F 6 HOH 76 500 500 HOH HOH A . G 6 HOH 1 413 413 HOH HOH B . G 6 HOH 2 417 417 HOH HOH B . G 6 HOH 3 427 427 HOH HOH B . G 6 HOH 4 442 442 HOH HOH B . G 6 HOH 5 446 446 HOH HOH B . G 6 HOH 6 489 489 HOH HOH B . G 6 HOH 7 490 490 HOH HOH B . G 6 HOH 8 492 492 HOH HOH B . G 6 HOH 9 494 494 HOH HOH B . G 6 HOH 10 495 495 HOH HOH B . H 6 HOH 1 405 405 HOH HOH C . H 6 HOH 2 406 406 HOH HOH C . H 6 HOH 3 408 408 HOH HOH C . H 6 HOH 4 416 416 HOH HOH C . H 6 HOH 5 419 419 HOH HOH C . H 6 HOH 6 421 421 HOH HOH C . H 6 HOH 7 439 439 HOH HOH C . H 6 HOH 8 445 445 HOH HOH C . H 6 HOH 9 450 450 HOH HOH C . H 6 HOH 10 451 451 HOH HOH C . H 6 HOH 11 456 456 HOH HOH C . H 6 HOH 12 458 458 HOH HOH C . H 6 HOH 13 462 462 HOH HOH C . H 6 HOH 14 463 463 HOH HOH C . H 6 HOH 15 497 497 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4860 ? 1 MORE -54 ? 1 'SSA (A^2)' 18290 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A SER 121 ? A SER 118 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 OG ? A SER 121 ? A SER 118 ? 1_555 76.3 ? 2 O ? A SER 121 ? A SER 118 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? A VAL 126 ? A VAL 123 ? 1_555 94.6 ? 3 OG ? A SER 121 ? A SER 118 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? A VAL 126 ? A VAL 123 ? 1_555 101.4 ? 4 O ? A SER 121 ? A SER 118 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? F HOH . ? A HOH 467 ? 1_555 146.4 ? 5 OG ? A SER 121 ? A SER 118 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? F HOH . ? A HOH 467 ? 1_555 70.7 ? 6 O ? A VAL 126 ? A VAL 123 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? F HOH . ? A HOH 467 ? 1_555 98.0 ? 7 O ? A SER 121 ? A SER 118 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? H HOH . ? C HOH 451 ? 1_555 152.4 ? 8 OG ? A SER 121 ? A SER 118 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? H HOH . ? C HOH 451 ? 1_555 126.7 ? 9 O ? A VAL 126 ? A VAL 123 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? H HOH . ? C HOH 451 ? 1_555 95.0 ? 10 O ? F HOH . ? A HOH 467 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? H HOH . ? C HOH 451 ? 1_555 56.8 ? 11 O ? A SER 121 ? A SER 118 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? F HOH . ? A HOH 403 ? 1_555 75.2 ? 12 OG ? A SER 121 ? A SER 118 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? F HOH . ? A HOH 403 ? 1_555 151.5 ? 13 O ? A VAL 126 ? A VAL 123 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? F HOH . ? A HOH 403 ? 1_555 79.6 ? 14 O ? F HOH . ? A HOH 467 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? F HOH . ? A HOH 403 ? 1_555 137.7 ? 15 O ? H HOH . ? C HOH 451 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? F HOH . ? A HOH 403 ? 1_555 81.1 ? 16 O ? A SER 121 ? A SER 118 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? H HOH . ? C HOH 450 ? 1_555 88.1 ? 17 OG ? A SER 121 ? A SER 118 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? H HOH . ? C HOH 450 ? 1_555 102.3 ? 18 O ? A VAL 126 ? A VAL 123 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? H HOH . ? C HOH 450 ? 1_555 156.1 ? 19 O ? F HOH . ? A HOH 467 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? H HOH . ? C HOH 450 ? 1_555 92.6 ? 20 O ? H HOH . ? C HOH 451 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? H HOH . ? C HOH 450 ? 1_555 73.1 ? 21 O ? F HOH . ? A HOH 403 ? 1_555 CA ? E CA . ? A CA 501 ? 1_555 O ? H HOH . ? C HOH 450 ? 1_555 78.2 ? 22 SG ? A CYS 201 ? A CYS 198 ? 1_555 FE3 ? D SF4 . ? A SF4 400 ? 1_555 S1 ? D SF4 . ? A SF4 400 ? 1_555 118.6 ? 23 SG ? A CYS 201 ? A CYS 198 ? 1_555 FE3 ? D SF4 . ? A SF4 400 ? 1_555 S2 ? D SF4 . ? A SF4 400 ? 1_555 113.9 ? 24 S1 ? D SF4 . ? A SF4 400 ? 1_555 FE3 ? D SF4 . ? A SF4 400 ? 1_555 S2 ? D SF4 . ? A SF4 400 ? 1_555 100.3 ? 25 SG ? A CYS 201 ? A CYS 198 ? 1_555 FE3 ? D SF4 . ? A SF4 400 ? 1_555 S4 ? D SF4 . ? A SF4 400 ? 1_555 123.0 ? 26 S1 ? D SF4 . ? A SF4 400 ? 1_555 FE3 ? D SF4 . ? A SF4 400 ? 1_555 S4 ? D SF4 . ? A SF4 400 ? 1_555 93.7 ? 27 S2 ? D SF4 . ? A SF4 400 ? 1_555 FE3 ? D SF4 . ? A SF4 400 ? 1_555 S4 ? D SF4 . ? A SF4 400 ? 1_555 103.4 ? 28 SG ? A CYS 208 ? A CYS 205 ? 1_555 FE2 ? D SF4 . ? A SF4 400 ? 1_555 S1 ? D SF4 . ? A SF4 400 ? 1_555 96.8 ? 29 SG ? A CYS 208 ? A CYS 205 ? 1_555 FE2 ? D SF4 . ? A SF4 400 ? 1_555 S3 ? D SF4 . ? A SF4 400 ? 1_555 146.5 ? 30 S1 ? D SF4 . ? A SF4 400 ? 1_555 FE2 ? D SF4 . ? A SF4 400 ? 1_555 S3 ? D SF4 . ? A SF4 400 ? 1_555 108.9 ? 31 SG ? A CYS 208 ? A CYS 205 ? 1_555 FE2 ? D SF4 . ? A SF4 400 ? 1_555 S4 ? D SF4 . ? A SF4 400 ? 1_555 91.8 ? 32 S1 ? D SF4 . ? A SF4 400 ? 1_555 FE2 ? D SF4 . ? A SF4 400 ? 1_555 S4 ? D SF4 . ? A SF4 400 ? 1_555 89.0 ? 33 S3 ? D SF4 . ? A SF4 400 ? 1_555 FE2 ? D SF4 . ? A SF4 400 ? 1_555 S4 ? D SF4 . ? A SF4 400 ? 1_555 109.4 ? 34 SG ? A CYS 211 ? A CYS 208 ? 1_555 FE4 ? D SF4 . ? A SF4 400 ? 1_555 S1 ? D SF4 . ? A SF4 400 ? 1_555 127.1 ? 35 SG ? A CYS 211 ? A CYS 208 ? 1_555 FE4 ? D SF4 . ? A SF4 400 ? 1_555 S2 ? D SF4 . ? A SF4 400 ? 1_555 112.3 ? 36 S1 ? D SF4 . ? A SF4 400 ? 1_555 FE4 ? D SF4 . ? A SF4 400 ? 1_555 S2 ? D SF4 . ? A SF4 400 ? 1_555 95.1 ? 37 SG ? A CYS 211 ? A CYS 208 ? 1_555 FE4 ? D SF4 . ? A SF4 400 ? 1_555 S3 ? D SF4 . ? A SF4 400 ? 1_555 110.9 ? 38 S1 ? D SF4 . ? A SF4 400 ? 1_555 FE4 ? D SF4 . ? A SF4 400 ? 1_555 S3 ? D SF4 . ? A SF4 400 ? 1_555 109.6 ? 39 S2 ? D SF4 . ? A SF4 400 ? 1_555 FE4 ? D SF4 . ? A SF4 400 ? 1_555 S3 ? D SF4 . ? A SF4 400 ? 1_555 96.6 ? 40 SG ? A CYS 217 ? A CYS 214 ? 1_555 FE1 ? D SF4 . ? A SF4 400 ? 1_555 S2 ? D SF4 . ? A SF4 400 ? 1_555 117.5 ? 41 SG ? A CYS 217 ? A CYS 214 ? 1_555 FE1 ? D SF4 . ? A SF4 400 ? 1_555 S3 ? D SF4 . ? A SF4 400 ? 1_555 113.4 ? 42 S2 ? D SF4 . ? A SF4 400 ? 1_555 FE1 ? D SF4 . ? A SF4 400 ? 1_555 S3 ? D SF4 . ? A SF4 400 ? 1_555 98.1 ? 43 SG ? A CYS 217 ? A CYS 214 ? 1_555 FE1 ? D SF4 . ? A SF4 400 ? 1_555 S4 ? D SF4 . ? A SF4 400 ? 1_555 116.5 ? 44 S2 ? D SF4 . ? A SF4 400 ? 1_555 FE1 ? D SF4 . ? A SF4 400 ? 1_555 S4 ? D SF4 . ? A SF4 400 ? 1_555 95.4 ? 45 S3 ? D SF4 . ? A SF4 400 ? 1_555 FE1 ? D SF4 . ? A SF4 400 ? 1_555 S4 ? D SF4 . ? A SF4 400 ? 1_555 113.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-08-28 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 4 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' pdbx_database_PDB_obs_spr 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_pdbx_database_status.status_code' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' ICE ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # _pdbx_entry_details.sequence_details ;Author states that the reference sequence (UNP P83847) is based on a catalytically inactive mutant MutY (D144N). The SEQRES record represent the wild-type sequence. ; _pdbx_entry_details.entry_id 3FSP _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 175 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OH _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 TYR _pdbx_validate_close_contact.auth_seq_id_2 180 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.07 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DA 2 ? ? "C1'" B DA 2 ? ? N9 B DA 2 ? ? 111.62 108.30 3.32 0.30 N 2 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 111.13 108.30 2.83 0.30 N 3 1 "O4'" B DG 9 ? B "C4'" B DG 9 ? B "C3'" B DG 9 ? B 101.62 104.50 -2.88 0.40 N 4 1 "O4'" B DG 9 ? A "C1'" B DG 9 ? A N9 B DG 9 ? A 111.52 108.30 3.22 0.30 N 5 1 "O4'" C DC 16 ? ? "C1'" C DC 16 ? ? N1 C DC 16 ? ? 110.71 108.30 2.41 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 9 ? ? -61.86 63.23 2 1 TYR A 88 ? ? 33.37 69.04 3 1 LYS A 103 ? ? -72.71 -73.88 4 1 VAL A 197 ? ? -105.78 -69.01 5 1 SER A 204 ? ? -96.93 56.93 6 1 ALA A 218 ? ? -37.43 -38.88 7 1 ASN A 264 ? ? 73.45 -3.04 8 1 PRO A 269 ? ? -36.76 119.78 9 1 GLN A 289 ? ? 149.42 168.10 10 1 LEU A 292 ? ? -54.12 8.98 11 1 VAL A 294 ? ? -176.72 140.96 12 1 THR A 297 ? ? -107.17 -132.05 13 1 ASP A 337 ? ? -60.28 8.10 14 1 ALA A 359 ? ? -87.20 34.30 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 12 ? CG ? A GLU 15 CG 2 1 Y 1 A GLU 12 ? CD ? A GLU 15 CD 3 1 Y 1 A GLU 12 ? OE1 ? A GLU 15 OE1 4 1 Y 1 A GLU 12 ? OE2 ? A GLU 15 OE2 5 1 Y 1 A ARG 15 ? CD ? A ARG 18 CD 6 1 Y 1 A ARG 15 ? NE ? A ARG 18 NE 7 1 Y 1 A ARG 15 ? CZ ? A ARG 18 CZ 8 1 Y 1 A ARG 15 ? NH1 ? A ARG 18 NH1 9 1 Y 1 A ARG 15 ? NH2 ? A ARG 18 NH2 10 1 Y 1 A ARG 34 ? CD ? A ARG 37 CD 11 1 Y 1 A ARG 34 ? NE ? A ARG 37 NE 12 1 Y 1 A ARG 34 ? CZ ? A ARG 37 CZ 13 1 Y 1 A ARG 34 ? NH1 ? A ARG 37 NH1 14 1 Y 1 A ARG 34 ? NH2 ? A ARG 37 NH2 15 1 Y 1 A GLU 52 ? CG ? A GLU 55 CG 16 1 Y 1 A GLU 52 ? CD ? A GLU 55 CD 17 1 Y 1 A GLU 52 ? OE1 ? A GLU 55 OE1 18 1 Y 1 A GLU 52 ? OE2 ? A GLU 55 OE2 19 1 Y 1 A GLU 69 ? CG ? A GLU 72 CG 20 1 Y 1 A GLU 69 ? CD ? A GLU 72 CD 21 1 Y 1 A GLU 69 ? OE1 ? A GLU 72 OE1 22 1 Y 1 A GLU 69 ? OE2 ? A GLU 72 OE2 23 1 Y 1 A GLU 116 ? CG ? A GLU 119 CG 24 1 Y 1 A GLU 116 ? CD ? A GLU 119 CD 25 1 Y 1 A GLU 116 ? OE1 ? A GLU 119 OE1 26 1 Y 1 A GLU 116 ? OE2 ? A GLU 119 OE2 27 1 Y 1 A ARG 119 ? CG ? A ARG 122 CG 28 1 Y 1 A ARG 119 ? CD ? A ARG 122 CD 29 1 Y 1 A ARG 119 ? NE ? A ARG 122 NE 30 1 Y 1 A ARG 119 ? CZ ? A ARG 122 CZ 31 1 Y 1 A ARG 119 ? NH1 ? A ARG 122 NH1 32 1 Y 1 A ARG 119 ? NH2 ? A ARG 122 NH2 33 1 Y 1 A GLN 172 ? CG ? A GLN 175 CG 34 1 Y 1 A GLN 172 ? CD ? A GLN 175 CD 35 1 Y 1 A GLN 172 ? OE1 ? A GLN 175 OE1 36 1 Y 1 A GLN 172 ? NE2 ? A GLN 175 NE2 37 1 Y 1 A ARG 202 ? CG ? A ARG 205 CG 38 1 Y 1 A ARG 202 ? CD ? A ARG 205 CD 39 1 Y 1 A ARG 202 ? NE ? A ARG 205 NE 40 1 Y 1 A ARG 202 ? CZ ? A ARG 205 CZ 41 1 Y 1 A ARG 202 ? NH1 ? A ARG 205 NH1 42 1 Y 1 A ARG 202 ? NH2 ? A ARG 205 NH2 43 1 Y 1 A LYS 235 ? CE ? A LYS 238 CE 44 1 Y 1 A LYS 235 ? NZ ? A LYS 238 NZ 45 1 Y 1 A ASP 247 ? CG ? A ASP 250 CG 46 1 Y 1 A ASP 247 ? OD1 ? A ASP 250 OD1 47 1 Y 1 A ASP 247 ? OD2 ? A ASP 250 OD2 48 1 Y 1 A ASP 274 ? CG ? A ASP 277 CG 49 1 Y 1 A ASP 274 ? OD1 ? A ASP 277 OD1 50 1 Y 1 A ASP 274 ? OD2 ? A ASP 277 OD2 51 1 Y 1 A GLU 280 ? CD ? A GLU 283 CD 52 1 Y 1 A GLU 280 ? OE1 ? A GLU 283 OE1 53 1 Y 1 A GLU 280 ? OE2 ? A GLU 283 OE2 54 1 Y 1 A LYS 281 ? CG ? A LYS 284 CG 55 1 Y 1 A LYS 281 ? CD ? A LYS 284 CD 56 1 Y 1 A LYS 281 ? CE ? A LYS 284 CE 57 1 Y 1 A LYS 281 ? NZ ? A LYS 284 NZ 58 1 Y 1 A GLN 289 ? CD ? A GLN 292 CD 59 1 Y 1 A GLN 289 ? OE1 ? A GLN 292 OE1 60 1 Y 1 A GLN 289 ? NE2 ? A GLN 292 NE2 61 1 Y 1 A GLU 295 ? CG ? A GLU 298 CG 62 1 Y 1 A GLU 295 ? CD ? A GLU 298 CD 63 1 Y 1 A GLU 295 ? OE1 ? A GLU 298 OE1 64 1 Y 1 A GLU 295 ? OE2 ? A GLU 298 OE2 65 1 Y 1 A LYS 356 ? CG ? A LYS 359 CG 66 1 Y 1 A LYS 356 ? CD ? A LYS 359 CD 67 1 Y 1 A LYS 356 ? CE ? A LYS 359 CE 68 1 Y 1 A LYS 356 ? NZ ? A LYS 359 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 3 1 Y 1 A HIS 0 ? A HIS 3 4 1 Y 1 A MET 1 ? A MET 4 5 1 Y 1 A THR 2 ? A THR 5 6 1 Y 1 A ARG 3 ? A ARG 6 7 1 Y 1 A GLU 4 ? A GLU 7 8 1 Y 1 A THR 5 ? A THR 8 9 1 Y 1 A GLU 6 ? A GLU 9 10 1 Y 1 A ARG 7 ? A ARG 10 11 1 Y 1 A GLY 361 ? A GLY 364 12 1 Y 1 A VAL 362 ? A VAL 365 13 1 Y 1 A ARG 363 ? A ARG 366 14 1 Y 1 A PRO 364 ? A PRO 367 15 1 Y 1 A PRO 365 ? A PRO 368 16 1 Y 1 A PRO 366 ? A PRO 369 17 1 Y 1 C DT 12 ? C DT 1 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3FSP 'b-form double helix' 3FSP 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 2 1_555 C DT 11 1_555 0.471 -0.144 -0.176 -2.266 1.049 2.662 1 B_DA2:DT22_C B 2 ? C 22 ? 20 1 1 B DG 3 1_555 C DC 10 1_555 -0.018 0.029 -0.201 0.085 -10.954 0.297 2 B_DG3:DC21_C B 3 ? C 21 ? 19 1 1 B DA 4 1_555 C DT 9 1_555 0.130 0.006 -0.097 -0.217 -7.757 0.928 3 B_DA4:DT20_C B 4 ? C 20 ? 20 1 1 B DC 5 1_555 C DG 8 1_555 0.432 0.113 -0.483 12.455 -4.259 1.636 4 B_DC5:DG19_C B 5 ? C 19 ? 19 1 1 B DT 7 1_555 C DA 6 1_555 -0.286 -0.078 -0.070 -11.825 -15.688 3.676 5 B_DT7:DA17_C B 7 ? C 17 ? 20 1 1 B DG 8 1_555 C DC 5 1_555 -0.156 0.035 -0.694 -8.722 4.685 3.008 6 B_DG8:DC16_C B 8 ? C 16 ? 19 1 1 B DG 9 1_555 C DC 4 1_555 0.250 -0.643 -0.384 17.027 0.381 -1.130 7 B_DG9:DC15_C B 9 ? C 15 ? 19 1 1 B DA 10 1_555 C DT 3 1_555 0.274 -0.470 -0.174 -0.326 -8.246 -2.316 8 B_DA10:DT14_C B 10 ? C 14 ? 20 1 1 B DC 11 1_555 C DG 2 1_555 -0.406 0.208 -0.547 13.982 3.910 13.782 9 B_DC11:DG13_C B 11 ? C 13 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 2 1_555 C DT 11 1_555 B DG 3 1_555 C DC 10 1_555 -0.744 0.178 3.262 -3.121 2.888 32.316 -0.191 0.777 3.320 5.161 5.577 32.587 1 BB_DA2DG3:DC21DT22_CC B 2 ? C 22 ? B 3 ? C 21 ? 1 B DG 3 1_555 C DC 10 1_555 B DA 4 1_555 C DT 9 1_555 -0.199 -0.203 3.267 -2.144 -0.586 38.469 -0.235 0.036 3.275 -0.888 3.251 38.530 2 BB_DG3DA4:DT20DC21_CC B 3 ? C 21 ? B 4 ? C 20 ? 1 B DA 4 1_555 C DT 9 1_555 B DC 5 1_555 C DG 8 1_555 0.803 -0.508 3.081 2.019 6.679 28.584 -2.337 -1.177 2.938 13.279 -4.015 29.406 3 BB_DA4DC5:DG19DT20_CC B 4 ? C 20 ? B 5 ? C 19 ? 1 B DT 7 1_555 C DA 6 1_555 B DG 8 1_555 C DC 5 1_555 0.665 0.936 3.467 2.294 4.478 36.931 0.822 -0.711 3.585 7.029 -3.601 37.261 4 BB_DT7DG8:DC16DA17_CC B 7 ? C 17 ? B 8 ? C 16 ? 1 B DG 8 1_555 C DC 5 1_555 B DG 9 1_555 C DC 4 1_555 -0.594 -0.433 2.801 -0.794 5.080 25.776 -2.111 1.126 2.683 11.245 1.757 26.275 5 BB_DG8DG9:DC15DC16_CC B 8 ? C 16 ? B 9 ? C 15 ? 1 B DG 9 1_555 C DC 4 1_555 B DA 10 1_555 C DT 3 1_555 -0.378 0.167 3.689 -4.439 6.533 36.114 -0.741 -0.086 3.682 10.386 7.056 36.940 6 BB_DG9DA10:DT14DC15_CC B 9 ? C 15 ? B 10 ? C 14 ? 1 B DA 10 1_555 C DT 3 1_555 B DC 11 1_555 C DG 2 1_555 1.363 -0.932 3.122 0.013 -1.967 35.457 -1.251 -2.233 3.168 -3.227 -0.021 35.509 7 BB_DA10DC11:DG13DT14_CC B 10 ? C 14 ? B 11 ? C 13 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'IRON/SULFUR CLUSTER' SF4 5 'CALCIUM ION' CA 6 water HOH #