HEADER HYDROLASE/DNA 11-JAN-09 3FSP OBSLTE 28-AUG-19 3FSP 6Q0C TITLE MUTY ADENINE GLYCOSYLASE BOUND TO A TRANSITION STATE ANALOG (1N) TITLE 2 PAIRED WITH DG IN DUPLEXED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: A/G-SPECIFIC ADENINE GLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*AP*GP*AP*CP*GP*TP*GP*GP*AP*C)-3'; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 5'-D(*T*GP*TP*CP*CP*AP*(NRI)P*GP*TP*CP*T)-3'; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: MUTY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: DNA CHEMICALLY SYNTHESIZED WITH 1N TRANSITION STATE SOURCE 15 ANALOG KEYWDS PROTEIN-DNA COMPLEX, DNA GLYCOSYLASE, TRANSITION STATE ANALOG, DNA KEYWDS 2 REPAIR, GLYCOSIDASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.L.O'SHEA,M.P.HORVATH,S.S.DAVID REVDAT 3 28-AUG-19 3FSP 1 OBSLTE LINK REVDAT 2 01-NOV-17 3FSP 1 REMARK REVDAT 1 19-JAN-10 3FSP 0 JRNL AUTH V.L.O'SHEA,S.CAO,J.L.RICHARDS,M.P.HORVATH,S.S.DAVID JRNL TITL STRUCTURAL ILLUMINATION OF A MUTY GLYCOSYLASE REACTION JRNL TITL 2 COORDINATE INTERMEDIATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 24041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM; EXTENDED TO INCLUDE REMARK 3 5% OF NEW REFLECTIONS, AFTER REMARK 3 INHERITING CROSS-VALIDATION REMARK 3 SELECTION FROM PDB ENTRY 1RRQ REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1164 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2741 REMARK 3 BIN R VALUE (WORKING SET) : 0.2999 REMARK 3 BIN FREE R VALUE : 0.3272 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 152 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2774 REMARK 3 NUCLEIC ACID ATOMS : 420 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.22710 REMARK 3 B22 (A**2) : -1.10950 REMARK 3 B33 (A**2) : 1.99930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.070 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.66 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.480 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 7.026 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 6.499 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.957 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : FS4B.CIF REMARK 3 PARAMETER FILE 2 : NRI_SMILES_FROM_OG1N23A.CIF REMARK 3 PARAMETER FILE 3 : NRI.EDITS REMARK 3 PARAMETER FILE 4 : METAL_G1N11A_26.EDITS REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : FS4B.CIF REMARK 3 TOPOLOGY FILE 2 : NRI_SMILES_FROM_OG1N23A.CIF REMARK 3 TOPOLOGY FILE 3 : NRI.EDITS REMARK 3 TOPOLOGY FILE 4 : METAL_G1N11A_26.EDITS REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ACTIVE SITE RESIDUES AND DNA REMARK 3 NUCLEOTIDES REMOVED FROM MR SEARCH MODEL; TORSION ANGLE REMARK 3 SIMULATED ANNEALING, POSITIONAL, RESTRAINED INDIVIDUAL B-VALUE REMARK 3 REFINEMENT; MODEL ADJUSTMENTS IN CONTEXT OF SIGMA-A WEIGHTED REMARK 3 COMPOSITE SA-OMIT MAPS REMARK 4 REMARK 4 3FSP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11583 REMARK 200 MONOCHROMATOR : SI(111) CRYSTALS REMARK 200 OPTICS : KOHZU, SI(111) CRYSTALS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24099 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.38300 REMARK 200 R SYM FOR SHELL (I) : 0.38300 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1RRQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICRO-SEEDED, 0.5M CALCIUM ACETATE, REMARK 280 0.1M TRIS, 14% (W/V) PEG4000, 0.005M BETA-MERCAPTOETHANOL, 5% (W/ REMARK 280 V) ETHYLENE GLYCOL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.47250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.07050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.47250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.07050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 GLY A 361 REMARK 465 VAL A 362 REMARK 465 ARG A 363 REMARK 465 PRO A 364 REMARK 465 PRO A 365 REMARK 465 PRO A 366 REMARK 465 DT C 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 ARG A 15 CD NE CZ NH1 NH2 REMARK 470 ARG A 34 CD NE CZ NH1 NH2 REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 235 CE NZ REMARK 470 ASP A 247 CG OD1 OD2 REMARK 470 ASP A 274 CG OD1 OD2 REMARK 470 GLU A 280 CD OE1 OE2 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 GLN A 289 CD OE1 NE2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 LYS A 356 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 175 OH TYR A 180 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA B 2 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC B 5 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG B 9 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DG B 9 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC C 16 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 63.23 -61.86 REMARK 500 TYR A 88 69.04 33.37 REMARK 500 LYS A 103 -73.88 -72.71 REMARK 500 VAL A 197 -69.01 -105.78 REMARK 500 SER A 204 56.93 -96.93 REMARK 500 ALA A 218 -38.88 -37.43 REMARK 500 ASN A 264 -3.04 73.45 REMARK 500 PRO A 269 119.78 -36.76 REMARK 500 GLN A 289 168.10 149.42 REMARK 500 LEU A 292 8.98 -54.12 REMARK 500 VAL A 294 140.96 -176.72 REMARK 500 THR A 297 -132.05 -107.17 REMARK 500 ASP A 337 8.10 -60.28 REMARK 500 ALA A 359 34.30 -87.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 118 O REMARK 620 2 SER A 118 OG 76.3 REMARK 620 3 VAL A 123 O 94.6 101.4 REMARK 620 4 HOH A 467 O 146.4 70.7 98.0 REMARK 620 5 HOH C 451 O 152.4 126.7 95.0 56.8 REMARK 620 6 HOH A 403 O 75.2 151.5 79.6 137.7 81.1 REMARK 620 7 HOH C 450 O 88.1 102.3 156.1 92.6 73.1 78.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 198 SG REMARK 620 2 SF4 A 400 S1 118.6 REMARK 620 3 SF4 A 400 S2 113.9 100.3 REMARK 620 4 SF4 A 400 S4 123.0 93.7 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 205 SG REMARK 620 2 SF4 A 400 S1 96.8 REMARK 620 3 SF4 A 400 S3 146.5 108.9 REMARK 620 4 SF4 A 400 S4 91.8 89.0 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 208 SG REMARK 620 2 SF4 A 400 S1 127.1 REMARK 620 3 SF4 A 400 S2 112.3 95.1 REMARK 620 4 SF4 A 400 S3 110.9 109.6 96.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 214 SG REMARK 620 2 SF4 A 400 S2 117.5 REMARK 620 3 SF4 A 400 S3 113.4 98.1 REMARK 620 4 SF4 A 400 S4 116.5 95.4 113.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RRQ RELATED DB: PDB REMARK 900 MUTY BOUND TO DNA WITH AN A:8-OXOG BASEPAIR, THE LESION RECOGNITION REMARK 900 COMPLEX REMARK 900 RELATED ID: 1RRS RELATED DB: PDB REMARK 900 MUTY BOUND TO DNA WITH AN ABASIC SITE REMARK 900 RELATED ID: 1VRL RELATED DB: PDB REMARK 900 MUTY BOUND TO DNA AND ADENINE FREE BASE REMARK 900 RELATED ID: 3FSQ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATES THAT THE REFERENCE SEQUENCE (UNP P83847) IS BASED ON REMARK 999 A CATALYTICALLY INACTIVE MUTANT MUTY (D144N). THE SEQRES RECORD REMARK 999 REPRESENT THE WILD-TYPE SEQUENCE. DBREF 3FSP A 1 366 UNP P83847 P83847_BACST 1 366 DBREF 3FSP B 1 11 PDB 3FSP 3FSP 1 11 DBREF 3FSP C 12 22 PDB 3FSP 3FSP 12 22 SEQADV 3FSP GLY A -2 UNP P83847 EXPRESSION TAG SEQADV 3FSP SER A -1 UNP P83847 EXPRESSION TAG SEQADV 3FSP HIS A 0 UNP P83847 EXPRESSION TAG SEQADV 3FSP ASP A 144 UNP P83847 ASN 144 SEE REMARK 999 SEQRES 1 A 369 GLY SER HIS MET THR ARG GLU THR GLU ARG PHE PRO ALA SEQRES 2 A 369 ARG GLU PHE GLN ARG ASP LEU LEU ASP TRP PHE ALA ARG SEQRES 3 A 369 GLU ARG ARG ASP LEU PRO TRP ARG LYS ASP ARG ASP PRO SEQRES 4 A 369 TYR LYS VAL TRP VAL SER GLU VAL MET LEU GLN GLN THR SEQRES 5 A 369 ARG VAL GLU THR VAL ILE PRO TYR PHE GLU GLN PHE ILE SEQRES 6 A 369 ASP ARG PHE PRO THR LEU GLU ALA LEU ALA ASP ALA ASP SEQRES 7 A 369 GLU ASP GLU VAL LEU LYS ALA TRP GLU GLY LEU GLY TYR SEQRES 8 A 369 TYR SER ARG VAL ARG ASN LEU HIS ALA ALA VAL LYS GLU SEQRES 9 A 369 VAL LYS THR ARG TYR GLY GLY LYS VAL PRO ASP ASP PRO SEQRES 10 A 369 ASP GLU PHE SER ARG LEU LYS GLY VAL GLY PRO TYR THR SEQRES 11 A 369 VAL GLY ALA VAL LEU SER LEU ALA TYR GLY VAL PRO GLU SEQRES 12 A 369 PRO ALA VAL ASP GLY ASN VAL MET ARG VAL LEU SER ARG SEQRES 13 A 369 LEU PHE LEU VAL THR ASP ASP ILE ALA LYS PRO SER THR SEQRES 14 A 369 ARG LYS ARG PHE GLU GLN ILE VAL ARG GLU ILE MET ALA SEQRES 15 A 369 TYR GLU ASN PRO GLY ALA PHE ASN GLU ALA LEU ILE GLU SEQRES 16 A 369 LEU GLY ALA LEU VAL CYS THR PRO ARG ARG PRO SER CYS SEQRES 17 A 369 LEU LEU CYS PRO VAL GLN ALA TYR CYS GLN ALA PHE ALA SEQRES 18 A 369 GLU GLY VAL ALA GLU GLU LEU PRO VAL LYS MET LYS LYS SEQRES 19 A 369 THR ALA VAL LYS GLN VAL PRO LEU ALA VAL ALA VAL LEU SEQRES 20 A 369 ALA ASP ASP GLU GLY ARG VAL LEU ILE ARG LYS ARG ASP SEQRES 21 A 369 SER THR GLY LEU LEU ALA ASN LEU TRP GLU PHE PRO SER SEQRES 22 A 369 CYS GLU THR ASP GLY ALA ASP GLY LYS GLU LYS LEU GLU SEQRES 23 A 369 GLN MET VAL GLY GLU GLN TYR GLY LEU GLN VAL GLU LEU SEQRES 24 A 369 THR GLU PRO ILE VAL SER PHE GLU HIS ALA PHE SER HIS SEQRES 25 A 369 LEU VAL TRP GLN LEU THR VAL PHE PRO GLY ARG LEU VAL SEQRES 26 A 369 HIS GLY GLY PRO VAL GLU GLU PRO TYR ARG LEU ALA PRO SEQRES 27 A 369 GLU ASP GLU LEU LYS ALA TYR ALA PHE PRO VAL SER HIS SEQRES 28 A 369 GLN ARG VAL TRP ARG GLU TYR LYS GLU TRP ALA SER GLY SEQRES 29 A 369 VAL ARG PRO PRO PRO SEQRES 1 B 11 DA DA DG DA DC DG DT DG DG DA DC SEQRES 1 C 11 DT DG DT DC DC DA NRI DG DT DC DT HET NRI C 18 11 HET SF4 A 400 8 HET CA A 501 1 HETNAM NRI PHOSPHORIC ACID MONO-(4-HYDROXY-PYRROLIDIN-3-YLMETHYL) HETNAM 2 NRI ESTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM CA CALCIUM ION FORMUL 3 NRI C5 H12 N O5 P FORMUL 4 SF4 FE4 S4 FORMUL 5 CA CA 2+ FORMUL 6 HOH *101(H2 O) HELIX 1 1 PRO A 9 ARG A 25 1 17 HELIX 2 2 LEU A 28 LYS A 32 5 5 HELIX 3 3 ASP A 35 LEU A 46 1 12 HELIX 4 4 ARG A 50 PHE A 65 1 16 HELIX 5 5 THR A 67 ASP A 73 1 7 HELIX 6 6 ASP A 75 ALA A 82 1 8 HELIX 7 7 TYR A 89 GLY A 107 1 19 HELIX 8 8 ASP A 113 ARG A 119 1 7 HELIX 9 9 GLY A 124 TYR A 136 1 13 HELIX 10 10 ASP A 144 PHE A 155 1 12 HELIX 11 11 LYS A 163 MET A 178 1 16 HELIX 12 12 ASN A 182 VAL A 197 1 16 HELIX 13 13 CYS A 214 GLY A 220 1 7 HELIX 14 14 VAL A 221 LEU A 225 5 5 HELIX 15 15 GLY A 278 VAL A 286 1 9 HELIX 16 16 PRO A 335 TYR A 342 5 8 HELIX 17 17 PRO A 345 GLU A 357 1 13 SHEET 1 A 4 SER A 270 GLU A 272 0 SHEET 2 A 4 LYS A 235 ALA A 245 -1 N ALA A 240 O CYS A 271 SHEET 3 A 4 LEU A 310 ARG A 320 1 O GLN A 313 N VAL A 237 SHEET 4 A 4 SER A 302 ALA A 306 -1 N HIS A 305 O TRP A 312 SHEET 1 B 2 VAL A 251 ARG A 254 0 SHEET 2 B 2 TYR A 331 ALA A 334 -1 O ALA A 334 N VAL A 251 LINK O3' DA C 17 P NRI C 18 1555 1555 1.62 LINK O3' NRI C 18 P DG C 19 1555 1555 1.62 LINK O SER A 118 CA CA A 501 1555 1555 2.23 LINK OG SER A 118 CA CA A 501 1555 1555 2.48 LINK O VAL A 123 CA CA A 501 1555 1555 2.42 LINK SG CYS A 198 FE3 SF4 A 400 1555 1555 2.19 LINK SG CYS A 205 FE2 SF4 A 400 1555 1555 2.37 LINK SG CYS A 208 FE4 SF4 A 400 1555 1555 2.21 LINK SG CYS A 214 FE1 SF4 A 400 1555 1555 2.31 LINK CA CA A 501 O HOH A 467 1555 1555 2.96 LINK CA CA A 501 O HOH C 451 1555 1555 2.47 LINK CA CA A 501 O HOH A 403 1555 1555 2.32 LINK CA CA A 501 O HOH C 450 1555 1555 2.85 CISPEP 1 LEU A 225 PRO A 226 0 -3.83 CISPEP 2 GLU A 329 PRO A 330 0 8.22 SITE 1 AC1 7 ARG A 153 CYS A 198 CYS A 205 CYS A 208 SITE 2 AC1 7 GLN A 211 CYS A 214 ALA A 222 SITE 1 AC2 6 SER A 118 VAL A 123 HOH A 403 HOH A 467 SITE 2 AC2 6 HOH C 450 HOH C 451 CRYST1 37.760 86.141 140.945 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026483 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007095 0.00000