data_3FTF # _entry.id 3FTF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FTF pdb_00003ftf 10.2210/pdb3ftf/pdb NDB PR0364 ? ? RCSB RCSB051020 ? ? WWPDB D_1000051020 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1QYR 'ligand-free E. coli KsgA' unspecified PDB 1ZQ9 'H. sapiens Dim1 in complex with SAM' unspecified PDB 1G38 'M.TaqI in complex with DNA and cofactor analog NEA' unspecified PDB 3FTC 'ligand-free A. aeolicus KsgA (KsgA2)' unspecified PDB 3FTD 'ligand-free A. aeolicus KsgA (KsgA1)' unspecified PDB 3FTE 'A. aeolicus KsgA in complex with RNA (KsgA-RNA)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FTF _pdbx_database_status.recvd_initial_deposition_date 2009-01-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tu, C.' 1 ? 'Ji, X.' 2 0000-0001-6942-1514 # _citation.id primary _citation.title 'Structural Basis for Binding of RNA and Cofactor by a KsgA Methyltransferase.' _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 374 _citation.page_last 385 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19278652 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.01.010 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tu, C.' 1 ? primary 'Tropea, J.E.' 2 ? primary 'Austin, B.P.' 3 ? primary 'Court, D.L.' 4 ? primary 'Waugh, D.S.' 5 ? primary 'Ji, X.' 6 0000-0001-6942-1514 # _cell.entry_id 3FTF _cell.length_a 43.130 _cell.length_b 58.074 _cell.length_c 68.981 _cell.angle_alpha 90.0 _cell.angle_beta 109.82 _cell.angle_gamma 90.0 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FTF _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dimethyladenosine transferase' 28484.355 1 2.1.1.- ? ? ? 2 polymer syn "5'-R(P*AP*AP*CP*CP*GP*UP*AP*GP*GP*GP*GP*AP*AP*CP*CP*UP*GP*CP*GP*GP*UP*U)-3'" 7113.291 2 ? ? ? ? 3 non-polymer syn S-ADENOSYL-L-HOMOCYSTEINE 384.411 1 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 5 water nat water 18.015 36 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase, 16S rRNA dimethylase, High level kasugamycin resistance protein ksgA, Kasugamycin dimethyltransferase ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SMVRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEV INEDASKFPFCSLGKELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKLQGKKDTGWLSVFVRTFYDVNYVM TVPPRFFVPPPKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIPEELLKEAGINPDARVEQLSLEDFFKL YRLIEDSGE ; ;SMVRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEV INEDASKFPFCSLGKELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKLQGKKDTGWLSVFVRTFYDVNYVM TVPPRFFVPPPKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIPEELLKEAGINPDARVEQLSLEDFFKL YRLIEDSGE ; A ? 2 polyribonucleotide no no AACCGUAGGGGAACCUGCGGUU AACCGUAGGGGAACCUGCGGUU C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 VAL n 1 4 ARG n 1 5 LEU n 1 6 LYS n 1 7 LYS n 1 8 SER n 1 9 PHE n 1 10 GLY n 1 11 GLN n 1 12 HIS n 1 13 LEU n 1 14 LEU n 1 15 VAL n 1 16 SER n 1 17 GLU n 1 18 GLY n 1 19 VAL n 1 20 LEU n 1 21 LYS n 1 22 LYS n 1 23 ILE n 1 24 ALA n 1 25 GLU n 1 26 GLU n 1 27 LEU n 1 28 ASN n 1 29 ILE n 1 30 GLU n 1 31 GLU n 1 32 GLY n 1 33 ASN n 1 34 THR n 1 35 VAL n 1 36 VAL n 1 37 GLU n 1 38 VAL n 1 39 GLY n 1 40 GLY n 1 41 GLY n 1 42 THR n 1 43 GLY n 1 44 ASN n 1 45 LEU n 1 46 THR n 1 47 LYS n 1 48 VAL n 1 49 LEU n 1 50 LEU n 1 51 GLN n 1 52 HIS n 1 53 PRO n 1 54 LEU n 1 55 LYS n 1 56 LYS n 1 57 LEU n 1 58 TYR n 1 59 VAL n 1 60 ILE n 1 61 GLU n 1 62 LEU n 1 63 ASP n 1 64 ARG n 1 65 GLU n 1 66 MET n 1 67 VAL n 1 68 GLU n 1 69 ASN n 1 70 LEU n 1 71 LYS n 1 72 SER n 1 73 ILE n 1 74 GLY n 1 75 ASP n 1 76 GLU n 1 77 ARG n 1 78 LEU n 1 79 GLU n 1 80 VAL n 1 81 ILE n 1 82 ASN n 1 83 GLU n 1 84 ASP n 1 85 ALA n 1 86 SER n 1 87 LYS n 1 88 PHE n 1 89 PRO n 1 90 PHE n 1 91 CYS n 1 92 SER n 1 93 LEU n 1 94 GLY n 1 95 LYS n 1 96 GLU n 1 97 LEU n 1 98 LYS n 1 99 VAL n 1 100 VAL n 1 101 GLY n 1 102 ASN n 1 103 LEU n 1 104 PRO n 1 105 TYR n 1 106 ASN n 1 107 VAL n 1 108 ALA n 1 109 SER n 1 110 LEU n 1 111 ILE n 1 112 ILE n 1 113 GLU n 1 114 ASN n 1 115 THR n 1 116 VAL n 1 117 TYR n 1 118 ASN n 1 119 LYS n 1 120 ASP n 1 121 CYS n 1 122 VAL n 1 123 PRO n 1 124 LEU n 1 125 ALA n 1 126 VAL n 1 127 PHE n 1 128 MET n 1 129 VAL n 1 130 GLN n 1 131 LYS n 1 132 GLU n 1 133 VAL n 1 134 ALA n 1 135 GLU n 1 136 LYS n 1 137 LEU n 1 138 GLN n 1 139 GLY n 1 140 LYS n 1 141 LYS n 1 142 ASP n 1 143 THR n 1 144 GLY n 1 145 TRP n 1 146 LEU n 1 147 SER n 1 148 VAL n 1 149 PHE n 1 150 VAL n 1 151 ARG n 1 152 THR n 1 153 PHE n 1 154 TYR n 1 155 ASP n 1 156 VAL n 1 157 ASN n 1 158 TYR n 1 159 VAL n 1 160 MET n 1 161 THR n 1 162 VAL n 1 163 PRO n 1 164 PRO n 1 165 ARG n 1 166 PHE n 1 167 PHE n 1 168 VAL n 1 169 PRO n 1 170 PRO n 1 171 PRO n 1 172 LYS n 1 173 VAL n 1 174 GLN n 1 175 SER n 1 176 ALA n 1 177 VAL n 1 178 ILE n 1 179 LYS n 1 180 LEU n 1 181 VAL n 1 182 LYS n 1 183 ASN n 1 184 GLU n 1 185 LYS n 1 186 PHE n 1 187 PRO n 1 188 VAL n 1 189 LYS n 1 190 ASP n 1 191 LEU n 1 192 LYS n 1 193 ASN n 1 194 TYR n 1 195 LYS n 1 196 LYS n 1 197 PHE n 1 198 LEU n 1 199 THR n 1 200 LYS n 1 201 ILE n 1 202 PHE n 1 203 GLN n 1 204 ASN n 1 205 ARG n 1 206 ARG n 1 207 LYS n 1 208 VAL n 1 209 LEU n 1 210 ARG n 1 211 LYS n 1 212 LYS n 1 213 ILE n 1 214 PRO n 1 215 GLU n 1 216 GLU n 1 217 LEU n 1 218 LEU n 1 219 LYS n 1 220 GLU n 1 221 ALA n 1 222 GLY n 1 223 ILE n 1 224 ASN n 1 225 PRO n 1 226 ASP n 1 227 ALA n 1 228 ARG n 1 229 VAL n 1 230 GLU n 1 231 GLN n 1 232 LEU n 1 233 SER n 1 234 LEU n 1 235 GLU n 1 236 ASP n 1 237 PHE n 1 238 PHE n 1 239 LYS n 1 240 LEU n 1 241 TYR n 1 242 ARG n 1 243 LEU n 1 244 ILE n 1 245 GLU n 1 246 ASP n 1 247 SER n 1 248 GLY n 1 249 GLU n 2 1 A n 2 2 A n 2 3 C n 2 4 C n 2 5 G n 2 6 U n 2 7 A n 2 8 G n 2 9 G n 2 10 G n 2 11 G n 2 12 A n 2 13 A n 2 14 C n 2 15 C n 2 16 U n 2 17 G n 2 18 C n 2 19 G n 2 20 G n 2 21 U n 2 22 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'aq_1816, ksgA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain VF5 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'genomic DNA' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aquifex aeolicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224324 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus(DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector pDONR201 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBA1939 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details '16S rRNA' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP KSGA_AQUAE O67680 1 ;MVRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVI NEDASKFPFCSLGKELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKLQGKKDTGWLSVFVRTFYDVNYVMT VPPRFFVPPPKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIPEELLKEAGINPDARVEQLSLEDFFKLY RLIEDSGE ; 1 ? 2 PDB 3FTF 3FTF 2 AACCGUAGGGGAACCUGCGGUU 1507 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FTF A 2 ? 249 ? O67680 1 ? 248 ? 1 248 2 2 3FTF C 1 ? 22 ? 3FTF 1507 ? 1528 ? 1507 1528 3 2 3FTF D 1 ? 22 ? 3FTF 1507 ? 1528 ? 1507 1528 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3FTF _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O67680 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAH 'L-peptide linking' n S-ADENOSYL-L-HOMOCYSTEINE ? 'C14 H20 N6 O5 S' 384.411 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3FTF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.90 _exptl_crystal.density_percent_sol 35.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.pdbx_details '0.2 M KF, 40% MPD, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 KF ? ? ? 1 2 1 MPD ? ? ? 1 3 2 KF ? ? ? 1 4 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2007-10-06 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Rosenbaum-Rock double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3FTF _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.78 _reflns.number_obs 6848 _reflns.number_all 6848 _reflns.percent_possible_obs 84.2 _reflns.pdbx_Rmerge_I_obs 0.144 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.0 _reflns.B_iso_Wilson_estimate 33.7 _reflns.pdbx_redundancy 3.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.78 _reflns_shell.d_res_low 2.88 _reflns_shell.percent_possible_all 49.9 _reflns_shell.Rmerge_I_obs 0.397 _reflns_shell.pdbx_Rsym_value 0.342 _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy 2.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 410 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3FTF _refine.ls_number_reflns_obs 6491 _refine.ls_number_reflns_all 6776 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.33 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 85.1 _refine.ls_R_factor_obs 0.2411 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23885 _refine.ls_R_factor_R_free 0.28795 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.5 _refine.ls_number_reflns_R_free 307 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 28.678 _refine.aniso_B[1][1] 0.02 _refine.aniso_B[2][2] -0.02 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;1. THE EFFECTIVE RESOLUTION FOR THIS STRUCTURE IS 3.05 ANGSTROM, AT WHICH THE COMPLETENESS OF X-RAY DATA > 93% AND THE OBSERVABLE DATA > 70% FOR HIGHEST RESOLUTION SHELL. 2. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS ; _refine.pdbx_starting_model 'PDB entry 3FTC' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3FTF _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs 0.43 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1985 _refine_hist.pdbx_number_atoms_nucleic_acid 948 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 2996 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 28.33 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_angle_refined_deg 1.171 ? ? ? 'X-RAY DIFFRACTION' ? r_bond_refined_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 5 2.8000 3.0162 . 0.2210 56 0.3554 . . 87 . . 800 . 'X-RAY DIFFRACTION' 5 3.0162 3.3193 . 0.1844 75 0.3102 . . 116 . . 1078 . 'X-RAY DIFFRACTION' 5 3.3193 3.7987 . 0.1725 94 0.2568 . . 146 . . 1341 . 'X-RAY DIFFRACTION' 5 3.7987 4.7822 . 0.1615 99 0.2366 . . 158 . . 1447 . 'X-RAY DIFFRACTION' 5 4.7822 28.3267 . 0.1934 99 0.2508 . . 164 . . 1456 . 'X-RAY DIFFRACTION' # _struct.entry_id 3FTF _struct.title 'Crystal structure of A. aeolicus KsgA in complex with RNA and SAH' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FTF _struct_keywords.pdbx_keywords TRANSFERASE/RNA _struct_keywords.text ;KsgA, Rossmann-like fold, RNA Methyltransferase, MTase, RNA, Antibiotic resistance, Methyltransferase, RNA-binding, rRNA processing, S-adenosyl-L-methionine, Transferase, TRANSFERASE-RNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly corresponds to the content of the asymmetric unit.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 16 ? GLU A 26 ? SER A 15 GLU A 25 1 ? 11 HELX_P HELX_P2 2 LEU A 45 ? LEU A 50 ? LEU A 44 LEU A 49 1 ? 6 HELX_P HELX_P3 3 PRO A 89 ? LEU A 93 ? PRO A 88 LEU A 92 5 ? 5 HELX_P HELX_P4 4 VAL A 107 ? ASN A 118 ? VAL A 106 ASN A 117 1 ? 12 HELX_P HELX_P5 5 LYS A 119 ? VAL A 122 ? LYS A 118 VAL A 121 5 ? 4 HELX_P HELX_P6 6 LYS A 131 ? GLY A 139 ? LYS A 130 GLY A 138 1 ? 9 HELX_P HELX_P7 7 GLY A 144 ? THR A 152 ? GLY A 143 THR A 151 1 ? 9 HELX_P HELX_P8 8 PRO A 163 ? PHE A 167 ? PRO A 162 PHE A 166 5 ? 5 HELX_P HELX_P9 9 ASP A 190 ? PHE A 202 ? ASP A 189 PHE A 201 1 ? 13 HELX_P HELX_P10 10 VAL A 208 ? LYS A 212 ? VAL A 207 LYS A 211 5 ? 5 HELX_P HELX_P11 11 PRO A 214 ? ALA A 221 ? PRO A 213 ALA A 220 1 ? 8 HELX_P HELX_P12 12 ARG A 228 ? LEU A 232 ? ARG A 227 LEU A 231 5 ? 5 HELX_P HELX_P13 13 SER A 233 ? ARG A 242 ? SER A 232 ARG A 241 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 91 SG ? ? ? 1_555 A CYS 121 SG ? ? A CYS 90 A CYS 120 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc1 metalc ? ? E K . K ? ? ? 1_555 C G 9 OP2 ? ? D K 500 D G 1515 1_555 ? ? ? ? ? ? ? 2.575 ? ? hydrog1 hydrog ? ? B A 1 N6 ? ? ? 1_555 C U 22 O2 ? ? C A 1507 D U 1528 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog2 hydrog ? ? B A 1 N7 ? ? ? 1_555 C U 22 N3 ? ? C A 1507 D U 1528 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog3 hydrog ? ? B A 2 N6 ? ? ? 1_555 C U 21 O2 ? ? C A 1508 D U 1527 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog4 hydrog ? ? B C 3 N3 ? ? ? 1_555 C G 20 N1 ? ? C C 1509 D G 1526 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B C 3 N4 ? ? ? 1_555 C G 20 O6 ? ? C C 1509 D G 1526 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B C 3 O2 ? ? ? 1_555 C G 20 N2 ? ? C C 1509 D G 1526 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B C 4 N3 ? ? ? 1_555 C G 19 N1 ? ? C C 1510 D G 1525 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B C 4 N4 ? ? ? 1_555 C G 19 O6 ? ? C C 1510 D G 1525 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B C 4 O2 ? ? ? 1_555 C G 19 N2 ? ? C C 1510 D G 1525 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B G 5 N1 ? ? ? 1_555 C C 18 N3 ? ? C G 1511 D C 1524 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B G 5 N2 ? ? ? 1_555 C C 18 O2 ? ? C G 1511 D C 1524 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B G 5 O6 ? ? ? 1_555 C C 18 N4 ? ? C G 1511 D C 1524 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B U 6 N3 ? ? ? 1_555 C G 17 O6 ? ? C U 1512 D G 1523 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? B U 6 O2 ? ? ? 1_555 C G 17 N1 ? ? C U 1512 D G 1523 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? B A 7 N1 ? ? ? 1_555 C U 16 N3 ? ? C A 1513 D U 1522 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog16 hydrog ? ? B G 8 N1 ? ? ? 1_555 C C 15 N3 ? ? C G 1514 D C 1521 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B G 8 N2 ? ? ? 1_555 C C 15 O2 ? ? C G 1514 D C 1521 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B G 8 O6 ? ? ? 1_555 C C 15 N4 ? ? C G 1514 D C 1521 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B G 9 N1 ? ? ? 1_555 C C 14 N3 ? ? C G 1515 D C 1520 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B G 9 N2 ? ? ? 1_555 C C 14 O2 ? ? C G 1515 D C 1520 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B G 9 O6 ? ? ? 1_555 C C 14 N4 ? ? C G 1515 D C 1520 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B G 10 N2 ? ? ? 1_555 C A 13 N7 ? ? C G 1516 D A 1519 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog23 hydrog ? ? B G 10 N3 ? ? ? 1_555 C A 13 N6 ? ? C G 1516 D A 1519 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog24 hydrog ? ? B G 11 N2 ? ? ? 1_555 C A 12 N7 ? ? C G 1517 D A 1518 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog25 hydrog ? ? B A 12 N6 ? ? ? 1_555 C G 11 N3 ? ? C A 1518 D G 1517 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog26 hydrog ? ? B A 12 N7 ? ? ? 1_555 C G 11 N2 ? ? C A 1518 D G 1517 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog27 hydrog ? ? B A 13 N6 ? ? ? 1_555 C G 10 N3 ? ? C A 1519 D G 1516 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog28 hydrog ? ? B A 13 N7 ? ? ? 1_555 C G 10 N2 ? ? C A 1519 D G 1516 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? B C 14 N3 ? ? ? 1_555 C G 9 N1 ? ? C C 1520 D G 1515 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 14 N4 ? ? ? 1_555 C G 9 O6 ? ? C C 1520 D G 1515 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B C 14 O2 ? ? ? 1_555 C G 9 N2 ? ? C C 1520 D G 1515 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B C 15 N3 ? ? ? 1_555 C G 8 N1 ? ? C C 1521 D G 1514 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B C 15 N4 ? ? ? 1_555 C G 8 O6 ? ? C C 1521 D G 1514 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B C 15 O2 ? ? ? 1_555 C G 8 N2 ? ? C C 1521 D G 1514 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B U 16 N3 ? ? ? 1_555 C A 7 N1 ? ? C U 1522 D A 1513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B U 16 O4 ? ? ? 1_555 C A 7 N6 ? ? C U 1522 D A 1513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B G 17 N1 ? ? ? 1_555 C U 6 O2 ? ? C G 1523 D U 1512 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog38 hydrog ? ? B G 17 O6 ? ? ? 1_555 C U 6 N3 ? ? C G 1523 D U 1512 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog39 hydrog ? ? B C 18 N3 ? ? ? 1_555 C G 5 N1 ? ? C C 1524 D G 1511 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B C 18 N4 ? ? ? 1_555 C G 5 O6 ? ? C C 1524 D G 1511 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B C 18 O2 ? ? ? 1_555 C G 5 N2 ? ? C C 1524 D G 1511 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 19 N1 ? ? ? 1_555 C C 4 N3 ? ? C G 1525 D C 1510 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 19 N2 ? ? ? 1_555 C C 4 O2 ? ? C G 1525 D C 1510 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 19 O6 ? ? ? 1_555 C C 4 N4 ? ? C G 1525 D C 1510 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 20 N1 ? ? ? 1_555 C C 3 N3 ? ? C G 1526 D C 1509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 20 N2 ? ? ? 1_555 C C 3 O2 ? ? C G 1526 D C 1509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 20 O6 ? ? ? 1_555 C C 3 N4 ? ? C G 1526 D C 1509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B U 21 N3 ? ? ? 1_555 C A 2 N1 ? ? C U 1527 D A 1508 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B U 21 O4 ? ? ? 1_555 C A 2 N6 ? ? C U 1527 D A 1508 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 78 ? ASN A 82 ? LEU A 77 ASN A 81 A 2 LYS A 56 ? GLU A 61 ? LYS A 55 GLU A 60 A 3 THR A 34 ? VAL A 38 ? THR A 33 VAL A 37 A 4 LEU A 97 ? ASN A 102 ? LEU A 96 ASN A 101 A 5 LEU A 124 ? GLN A 130 ? LEU A 123 GLN A 129 A 6 SER A 175 ? LYS A 182 ? SER A 174 LYS A 181 A 7 TYR A 154 ? VAL A 162 ? TYR A 153 VAL A 161 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 81 ? O ILE A 80 N VAL A 59 ? N VAL A 58 A 2 3 O TYR A 58 ? O TYR A 57 N GLU A 37 ? N GLU A 36 A 3 4 N VAL A 36 ? N VAL A 35 O VAL A 100 ? O VAL A 99 A 4 5 N GLY A 101 ? N GLY A 100 O MET A 128 ? O MET A 127 A 5 6 N ALA A 125 ? N ALA A 124 O LEU A 180 ? O LEU A 179 A 6 7 O VAL A 181 ? O VAL A 180 N ASP A 155 ? N ASP A 154 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SAH 501 ? 18 'BINDING SITE FOR RESIDUE SAH A 501' AC2 Software D K 500 ? 3 'BINDING SITE FOR RESIDUE K D 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 PHE A 9 ? PHE A 8 . ? 1_555 ? 2 AC1 18 GLN A 11 ? GLN A 10 . ? 1_555 ? 3 AC1 18 HIS A 12 ? HIS A 11 . ? 1_555 ? 4 AC1 18 LEU A 13 ? LEU A 12 . ? 1_555 ? 5 AC1 18 LEU A 14 ? LEU A 13 . ? 1_555 ? 6 AC1 18 GLY A 39 ? GLY A 38 . ? 1_555 ? 7 AC1 18 GLY A 40 ? GLY A 39 . ? 1_555 ? 8 AC1 18 GLY A 41 ? GLY A 40 . ? 1_555 ? 9 AC1 18 THR A 42 ? THR A 41 . ? 1_555 ? 10 AC1 18 GLY A 43 ? GLY A 42 . ? 1_555 ? 11 AC1 18 ASN A 44 ? ASN A 43 . ? 1_555 ? 12 AC1 18 ILE A 60 ? ILE A 59 . ? 1_555 ? 13 AC1 18 GLU A 61 ? GLU A 60 . ? 1_555 ? 14 AC1 18 LEU A 62 ? LEU A 61 . ? 1_555 ? 15 AC1 18 ASP A 84 ? ASP A 83 . ? 1_555 ? 16 AC1 18 ALA A 85 ? ALA A 84 . ? 1_555 ? 17 AC1 18 ASN A 102 ? ASN A 101 . ? 1_555 ? 18 AC1 18 PRO A 104 ? PRO A 103 . ? 1_555 ? 19 AC2 3 G C 9 ? G D 1515 . ? 1_555 ? 20 AC2 3 G C 10 ? G D 1516 . ? 1_555 ? 21 AC2 3 G C 11 ? G D 1517 . ? 1_555 ? # _database_PDB_matrix.entry_id 3FTF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FTF _atom_sites.fract_transf_matrix[1][1] 0.023186 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008357 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017219 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015410 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 0 ? ? ? A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 VAL 3 2 2 VAL VAL A . n A 1 4 ARG 4 3 3 ARG ARG A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 SER 8 7 7 SER SER A . n A 1 9 PHE 9 8 8 PHE PHE A . n A 1 10 GLY 10 9 9 GLY GLY A . n A 1 11 GLN 11 10 10 GLN GLN A . n A 1 12 HIS 12 11 11 HIS HIS A . n A 1 13 LEU 13 12 12 LEU LEU A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 SER 16 15 15 SER SER A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 LYS 21 20 20 LYS LYS A . n A 1 22 LYS 22 21 21 LYS LYS A . n A 1 23 ILE 23 22 22 ILE ILE A . n A 1 24 ALA 24 23 23 ALA ALA A . n A 1 25 GLU 25 24 24 GLU GLU A . n A 1 26 GLU 26 25 25 GLU GLU A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 ASN 28 27 27 ASN ASN A . n A 1 29 ILE 29 28 28 ILE ILE A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 GLY 32 31 31 GLY GLY A . n A 1 33 ASN 33 32 32 ASN ASN A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 VAL 35 34 34 VAL VAL A . n A 1 36 VAL 36 35 35 VAL VAL A . n A 1 37 GLU 37 36 36 GLU GLU A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 GLY 39 38 38 GLY GLY A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 GLY 41 40 40 GLY GLY A . n A 1 42 THR 42 41 41 THR THR A . n A 1 43 GLY 43 42 42 GLY GLY A . n A 1 44 ASN 44 43 43 ASN ASN A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 THR 46 45 45 THR THR A . n A 1 47 LYS 47 46 46 LYS LYS A . n A 1 48 VAL 48 47 47 VAL VAL A . n A 1 49 LEU 49 48 48 LEU LEU A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 GLN 51 50 50 GLN GLN A . n A 1 52 HIS 52 51 51 HIS HIS A . n A 1 53 PRO 53 52 52 PRO PRO A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 LYS 55 54 54 LYS LYS A . n A 1 56 LYS 56 55 55 LYS LYS A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 TYR 58 57 57 TYR TYR A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 ILE 60 59 59 ILE ILE A . n A 1 61 GLU 61 60 60 GLU GLU A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 ASP 63 62 62 ASP ASP A . n A 1 64 ARG 64 63 63 ARG ARG A . n A 1 65 GLU 65 64 64 GLU GLU A . n A 1 66 MET 66 65 65 MET MET A . n A 1 67 VAL 67 66 66 VAL VAL A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 ASN 69 68 68 ASN ASN A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 SER 72 71 71 SER SER A . n A 1 73 ILE 73 72 72 ILE ILE A . n A 1 74 GLY 74 73 73 GLY GLY A . n A 1 75 ASP 75 74 74 ASP ASP A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 ARG 77 76 76 ARG ARG A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 GLU 79 78 78 GLU GLU A . n A 1 80 VAL 80 79 79 VAL VAL A . n A 1 81 ILE 81 80 80 ILE ILE A . n A 1 82 ASN 82 81 81 ASN ASN A . n A 1 83 GLU 83 82 82 GLU GLU A . n A 1 84 ASP 84 83 83 ASP ASP A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 SER 86 85 85 SER SER A . n A 1 87 LYS 87 86 86 LYS LYS A . n A 1 88 PHE 88 87 87 PHE PHE A . n A 1 89 PRO 89 88 88 PRO PRO A . n A 1 90 PHE 90 89 89 PHE PHE A . n A 1 91 CYS 91 90 90 CYS CYS A . n A 1 92 SER 92 91 91 SER SER A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 GLY 94 93 93 GLY GLY A . n A 1 95 LYS 95 94 94 LYS LYS A . n A 1 96 GLU 96 95 95 GLU GLU A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 LYS 98 97 97 LYS LYS A . n A 1 99 VAL 99 98 98 VAL VAL A . n A 1 100 VAL 100 99 99 VAL VAL A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 ASN 102 101 101 ASN ASN A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 PRO 104 103 103 PRO PRO A . n A 1 105 TYR 105 104 104 TYR TYR A . n A 1 106 ASN 106 105 105 ASN ASN A . n A 1 107 VAL 107 106 106 VAL VAL A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 SER 109 108 108 SER SER A . n A 1 110 LEU 110 109 109 LEU LEU A . n A 1 111 ILE 111 110 110 ILE ILE A . n A 1 112 ILE 112 111 111 ILE ILE A . n A 1 113 GLU 113 112 112 GLU GLU A . n A 1 114 ASN 114 113 113 ASN ASN A . n A 1 115 THR 115 114 114 THR THR A . n A 1 116 VAL 116 115 115 VAL VAL A . n A 1 117 TYR 117 116 116 TYR TYR A . n A 1 118 ASN 118 117 117 ASN ASN A . n A 1 119 LYS 119 118 118 LYS LYS A . n A 1 120 ASP 120 119 119 ASP ASP A . n A 1 121 CYS 121 120 120 CYS CYS A . n A 1 122 VAL 122 121 121 VAL VAL A . n A 1 123 PRO 123 122 122 PRO PRO A . n A 1 124 LEU 124 123 123 LEU LEU A . n A 1 125 ALA 125 124 124 ALA ALA A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 PHE 127 126 126 PHE PHE A . n A 1 128 MET 128 127 127 MET MET A . n A 1 129 VAL 129 128 128 VAL VAL A . n A 1 130 GLN 130 129 129 GLN GLN A . n A 1 131 LYS 131 130 130 LYS LYS A . n A 1 132 GLU 132 131 131 GLU GLU A . n A 1 133 VAL 133 132 132 VAL VAL A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 GLU 135 134 134 GLU GLU A . n A 1 136 LYS 136 135 135 LYS LYS A . n A 1 137 LEU 137 136 136 LEU LEU A . n A 1 138 GLN 138 137 137 GLN GLN A . n A 1 139 GLY 139 138 138 GLY GLY A . n A 1 140 LYS 140 139 139 LYS LYS A . n A 1 141 LYS 141 140 140 LYS LYS A . n A 1 142 ASP 142 141 141 ASP ASP A . n A 1 143 THR 143 142 142 THR THR A . n A 1 144 GLY 144 143 143 GLY GLY A . n A 1 145 TRP 145 144 144 TRP TRP A . n A 1 146 LEU 146 145 145 LEU LEU A . n A 1 147 SER 147 146 146 SER SER A . n A 1 148 VAL 148 147 147 VAL VAL A . n A 1 149 PHE 149 148 148 PHE PHE A . n A 1 150 VAL 150 149 149 VAL VAL A . n A 1 151 ARG 151 150 150 ARG ARG A . n A 1 152 THR 152 151 151 THR THR A . n A 1 153 PHE 153 152 152 PHE PHE A . n A 1 154 TYR 154 153 153 TYR TYR A . n A 1 155 ASP 155 154 154 ASP ASP A . n A 1 156 VAL 156 155 155 VAL VAL A . n A 1 157 ASN 157 156 156 ASN ASN A . n A 1 158 TYR 158 157 157 TYR TYR A . n A 1 159 VAL 159 158 158 VAL VAL A . n A 1 160 MET 160 159 159 MET MET A . n A 1 161 THR 161 160 160 THR THR A . n A 1 162 VAL 162 161 161 VAL VAL A . n A 1 163 PRO 163 162 162 PRO PRO A . n A 1 164 PRO 164 163 163 PRO PRO A . n A 1 165 ARG 165 164 164 ARG ARG A . n A 1 166 PHE 166 165 165 PHE PHE A . n A 1 167 PHE 167 166 166 PHE PHE A . n A 1 168 VAL 168 167 167 VAL VAL A . n A 1 169 PRO 169 168 168 PRO PRO A . n A 1 170 PRO 170 169 169 PRO PRO A . n A 1 171 PRO 171 170 170 PRO PRO A . n A 1 172 LYS 172 171 171 LYS LYS A . n A 1 173 VAL 173 172 172 VAL VAL A . n A 1 174 GLN 174 173 173 GLN GLN A . n A 1 175 SER 175 174 174 SER SER A . n A 1 176 ALA 176 175 175 ALA ALA A . n A 1 177 VAL 177 176 176 VAL VAL A . n A 1 178 ILE 178 177 177 ILE ILE A . n A 1 179 LYS 179 178 178 LYS LYS A . n A 1 180 LEU 180 179 179 LEU LEU A . n A 1 181 VAL 181 180 180 VAL VAL A . n A 1 182 LYS 182 181 181 LYS LYS A . n A 1 183 ASN 183 182 182 ASN ASN A . n A 1 184 GLU 184 183 183 GLU GLU A . n A 1 185 LYS 185 184 184 LYS LYS A . n A 1 186 PHE 186 185 185 PHE PHE A . n A 1 187 PRO 187 186 186 PRO PRO A . n A 1 188 VAL 188 187 187 VAL VAL A . n A 1 189 LYS 189 188 188 LYS LYS A . n A 1 190 ASP 190 189 189 ASP ASP A . n A 1 191 LEU 191 190 190 LEU LEU A . n A 1 192 LYS 192 191 191 LYS LYS A . n A 1 193 ASN 193 192 192 ASN ASN A . n A 1 194 TYR 194 193 193 TYR TYR A . n A 1 195 LYS 195 194 194 LYS LYS A . n A 1 196 LYS 196 195 195 LYS LYS A . n A 1 197 PHE 197 196 196 PHE PHE A . n A 1 198 LEU 198 197 197 LEU LEU A . n A 1 199 THR 199 198 198 THR THR A . n A 1 200 LYS 200 199 199 LYS LYS A . n A 1 201 ILE 201 200 200 ILE ILE A . n A 1 202 PHE 202 201 201 PHE PHE A . n A 1 203 GLN 203 202 202 GLN GLN A . n A 1 204 ASN 204 203 203 ASN ASN A . n A 1 205 ARG 205 204 204 ARG ARG A . n A 1 206 ARG 206 205 205 ARG ARG A . n A 1 207 LYS 207 206 206 LYS LYS A . n A 1 208 VAL 208 207 207 VAL VAL A . n A 1 209 LEU 209 208 208 LEU LEU A . n A 1 210 ARG 210 209 209 ARG ARG A . n A 1 211 LYS 211 210 210 LYS LYS A . n A 1 212 LYS 212 211 211 LYS LYS A . n A 1 213 ILE 213 212 212 ILE ILE A . n A 1 214 PRO 214 213 213 PRO PRO A . n A 1 215 GLU 215 214 214 GLU GLU A . n A 1 216 GLU 216 215 215 GLU GLU A . n A 1 217 LEU 217 216 216 LEU LEU A . n A 1 218 LEU 218 217 217 LEU LEU A . n A 1 219 LYS 219 218 218 LYS LYS A . n A 1 220 GLU 220 219 219 GLU GLU A . n A 1 221 ALA 221 220 220 ALA ALA A . n A 1 222 GLY 222 221 221 GLY GLY A . n A 1 223 ILE 223 222 222 ILE ILE A . n A 1 224 ASN 224 223 223 ASN ASN A . n A 1 225 PRO 225 224 224 PRO PRO A . n A 1 226 ASP 226 225 225 ASP ASP A . n A 1 227 ALA 227 226 226 ALA ALA A . n A 1 228 ARG 228 227 227 ARG ARG A . n A 1 229 VAL 229 228 228 VAL VAL A . n A 1 230 GLU 230 229 229 GLU GLU A . n A 1 231 GLN 231 230 230 GLN GLN A . n A 1 232 LEU 232 231 231 LEU LEU A . n A 1 233 SER 233 232 232 SER SER A . n A 1 234 LEU 234 233 233 LEU LEU A . n A 1 235 GLU 235 234 234 GLU GLU A . n A 1 236 ASP 236 235 235 ASP ASP A . n A 1 237 PHE 237 236 236 PHE PHE A . n A 1 238 PHE 238 237 237 PHE PHE A . n A 1 239 LYS 239 238 238 LYS LYS A . n A 1 240 LEU 240 239 239 LEU LEU A . n A 1 241 TYR 241 240 240 TYR TYR A . n A 1 242 ARG 242 241 241 ARG ARG A . n A 1 243 LEU 243 242 242 LEU LEU A . n A 1 244 ILE 244 243 243 ILE ILE A . n A 1 245 GLU 245 244 244 GLU GLU A . n A 1 246 ASP 246 245 245 ASP ASP A . n A 1 247 SER 247 246 246 SER SER A . n A 1 248 GLY 248 247 ? ? ? A . n A 1 249 GLU 249 248 ? ? ? A . n B 2 1 A 1 1507 1507 A A C . n B 2 2 A 2 1508 1508 A A C . n B 2 3 C 3 1509 1509 C C C . n B 2 4 C 4 1510 1510 C C C . n B 2 5 G 5 1511 1511 G G C . n B 2 6 U 6 1512 1512 U U C . n B 2 7 A 7 1513 1513 A A C . n B 2 8 G 8 1514 1514 G G C . n B 2 9 G 9 1515 1515 G G C . n B 2 10 G 10 1516 1516 G G C . n B 2 11 G 11 1517 1517 G G C . n B 2 12 A 12 1518 1518 A A C . n B 2 13 A 13 1519 1519 A A C . n B 2 14 C 14 1520 1520 C C C . n B 2 15 C 15 1521 1521 C C C . n B 2 16 U 16 1522 1522 U U C . n B 2 17 G 17 1523 1523 G G C . n B 2 18 C 18 1524 1524 C C C . n B 2 19 G 19 1525 1525 G G C . n B 2 20 G 20 1526 1526 G G C . n B 2 21 U 21 1527 1527 U U C . n B 2 22 U 22 1528 1528 U U C . n C 2 1 A 1 1507 1507 A A D . n C 2 2 A 2 1508 1508 A A D . n C 2 3 C 3 1509 1509 C C D . n C 2 4 C 4 1510 1510 C C D . n C 2 5 G 5 1511 1511 G G D . n C 2 6 U 6 1512 1512 U U D . n C 2 7 A 7 1513 1513 A A D . n C 2 8 G 8 1514 1514 G G D . n C 2 9 G 9 1515 1515 G G D . n C 2 10 G 10 1516 1516 G G D . n C 2 11 G 11 1517 1517 G G D . n C 2 12 A 12 1518 1518 A A D . n C 2 13 A 13 1519 1519 A A D . n C 2 14 C 14 1520 1520 C C D . n C 2 15 C 15 1521 1521 C C D . n C 2 16 U 16 1522 1522 U U D . n C 2 17 G 17 1523 1523 G G D . n C 2 18 C 18 1524 1524 C C D . n C 2 19 G 19 1525 1525 G G D . n C 2 20 G 20 1526 1526 G G D . n C 2 21 U 21 1527 1527 U U D . n C 2 22 U 22 1528 1528 U U D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SAH 1 501 501 SAH SAH A . E 4 K 1 500 1 K K D . F 5 HOH 1 601 601 HOH HOH A . F 5 HOH 2 602 602 HOH HOH A . F 5 HOH 3 603 603 HOH HOH A . F 5 HOH 4 605 605 HOH HOH A . F 5 HOH 5 609 609 HOH HOH A . F 5 HOH 6 610 610 HOH HOH A . F 5 HOH 7 611 611 HOH HOH A . F 5 HOH 8 612 612 HOH HOH A . F 5 HOH 9 614 614 HOH HOH A . F 5 HOH 10 615 615 HOH HOH A . F 5 HOH 11 616 616 HOH HOH A . F 5 HOH 12 618 618 HOH HOH A . F 5 HOH 13 619 619 HOH HOH A . F 5 HOH 14 621 621 HOH HOH A . F 5 HOH 15 624 624 HOH HOH A . F 5 HOH 16 626 626 HOH HOH A . F 5 HOH 17 627 627 HOH HOH A . F 5 HOH 18 628 628 HOH HOH A . F 5 HOH 19 630 630 HOH HOH A . F 5 HOH 20 631 631 HOH HOH A . F 5 HOH 21 632 632 HOH HOH A . F 5 HOH 22 633 633 HOH HOH A . F 5 HOH 23 634 634 HOH HOH A . G 5 HOH 1 607 607 HOH HOH C . G 5 HOH 2 608 608 HOH HOH C . G 5 HOH 3 613 613 HOH HOH C . G 5 HOH 4 620 620 HOH HOH C . G 5 HOH 5 623 623 HOH HOH C . G 5 HOH 6 629 629 HOH HOH C . G 5 HOH 7 635 635 HOH HOH C . G 5 HOH 8 636 636 HOH HOH C . H 5 HOH 1 604 604 HOH HOH D . H 5 HOH 2 606 606 HOH HOH D . H 5 HOH 3 617 617 HOH HOH D . H 5 HOH 4 622 622 HOH HOH D . H 5 HOH 5 625 625 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4180 ? 1 MORE -23.6 ? 1 'SSA (A^2)' 18340 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' citation_author 5 3 'Structure model' database_2 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site 9 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.identifier_ORCID' 2 3 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 3 'Structure model' '_struct_ref_seq_dif.details' 18 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 G _pdbx_validate_rmsd_angle.auth_seq_id_1 1517 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 1517 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 P _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 A _pdbx_validate_rmsd_angle.auth_seq_id_3 1518 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 127.38 _pdbx_validate_rmsd_angle.angle_target_value 119.70 _pdbx_validate_rmsd_angle.angle_deviation 7.68 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 2 ? ? -78.19 -150.84 2 1 ARG A 3 ? ? 63.43 -22.56 3 1 LEU A 4 ? ? 14.01 88.25 4 1 LYS A 5 ? ? -52.46 97.18 5 1 VAL A 14 ? ? -108.80 70.78 6 1 GLU A 30 ? ? -5.11 -66.67 7 1 LEU A 69 ? ? -89.83 36.78 8 1 LYS A 70 ? ? -73.66 -124.97 9 1 CYS A 90 ? ? -65.40 4.00 10 1 VAL A 158 ? ? -103.81 -67.95 11 1 VAL A 167 ? ? -73.64 -92.29 12 1 LYS A 184 ? ? -75.40 -81.59 13 1 ASP A 189 ? ? 31.16 79.70 14 1 ARG A 209 ? ? -64.81 1.19 15 1 ALA A 220 ? ? -69.25 6.45 16 1 ASP A 225 ? ? -93.43 47.48 17 1 GLU A 229 ? ? -85.56 34.95 18 1 LEU A 242 ? ? -107.38 66.90 19 1 ILE A 243 ? ? -170.20 -34.76 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 0 ? A SER 1 2 1 Y 1 A GLY 247 ? A GLY 248 3 1 Y 1 A GLU 248 ? A GLU 249 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 HOH O O N N 268 HOH H1 H N N 269 HOH H2 H N N 270 ILE N N N N 271 ILE CA C N S 272 ILE C C N N 273 ILE O O N N 274 ILE CB C N S 275 ILE CG1 C N N 276 ILE CG2 C N N 277 ILE CD1 C N N 278 ILE OXT O N N 279 ILE H H N N 280 ILE H2 H N N 281 ILE HA H N N 282 ILE HB H N N 283 ILE HG12 H N N 284 ILE HG13 H N N 285 ILE HG21 H N N 286 ILE HG22 H N N 287 ILE HG23 H N N 288 ILE HD11 H N N 289 ILE HD12 H N N 290 ILE HD13 H N N 291 ILE HXT H N N 292 K K K N N 293 LEU N N N N 294 LEU CA C N S 295 LEU C C N N 296 LEU O O N N 297 LEU CB C N N 298 LEU CG C N N 299 LEU CD1 C N N 300 LEU CD2 C N N 301 LEU OXT O N N 302 LEU H H N N 303 LEU H2 H N N 304 LEU HA H N N 305 LEU HB2 H N N 306 LEU HB3 H N N 307 LEU HG H N N 308 LEU HD11 H N N 309 LEU HD12 H N N 310 LEU HD13 H N N 311 LEU HD21 H N N 312 LEU HD22 H N N 313 LEU HD23 H N N 314 LEU HXT H N N 315 LYS N N N N 316 LYS CA C N S 317 LYS C C N N 318 LYS O O N N 319 LYS CB C N N 320 LYS CG C N N 321 LYS CD C N N 322 LYS CE C N N 323 LYS NZ N N N 324 LYS OXT O N N 325 LYS H H N N 326 LYS H2 H N N 327 LYS HA H N N 328 LYS HB2 H N N 329 LYS HB3 H N N 330 LYS HG2 H N N 331 LYS HG3 H N N 332 LYS HD2 H N N 333 LYS HD3 H N N 334 LYS HE2 H N N 335 LYS HE3 H N N 336 LYS HZ1 H N N 337 LYS HZ2 H N N 338 LYS HZ3 H N N 339 LYS HXT H N N 340 MET N N N N 341 MET CA C N S 342 MET C C N N 343 MET O O N N 344 MET CB C N N 345 MET CG C N N 346 MET SD S N N 347 MET CE C N N 348 MET OXT O N N 349 MET H H N N 350 MET H2 H N N 351 MET HA H N N 352 MET HB2 H N N 353 MET HB3 H N N 354 MET HG2 H N N 355 MET HG3 H N N 356 MET HE1 H N N 357 MET HE2 H N N 358 MET HE3 H N N 359 MET HXT H N N 360 PHE N N N N 361 PHE CA C N S 362 PHE C C N N 363 PHE O O N N 364 PHE CB C N N 365 PHE CG C Y N 366 PHE CD1 C Y N 367 PHE CD2 C Y N 368 PHE CE1 C Y N 369 PHE CE2 C Y N 370 PHE CZ C Y N 371 PHE OXT O N N 372 PHE H H N N 373 PHE H2 H N N 374 PHE HA H N N 375 PHE HB2 H N N 376 PHE HB3 H N N 377 PHE HD1 H N N 378 PHE HD2 H N N 379 PHE HE1 H N N 380 PHE HE2 H N N 381 PHE HZ H N N 382 PHE HXT H N N 383 PRO N N N N 384 PRO CA C N S 385 PRO C C N N 386 PRO O O N N 387 PRO CB C N N 388 PRO CG C N N 389 PRO CD C N N 390 PRO OXT O N N 391 PRO H H N N 392 PRO HA H N N 393 PRO HB2 H N N 394 PRO HB3 H N N 395 PRO HG2 H N N 396 PRO HG3 H N N 397 PRO HD2 H N N 398 PRO HD3 H N N 399 PRO HXT H N N 400 SAH N N N N 401 SAH CA C N S 402 SAH CB C N N 403 SAH CG C N N 404 SAH SD S N N 405 SAH C C N N 406 SAH O O N N 407 SAH OXT O N N 408 SAH "C5'" C N N 409 SAH "C4'" C N S 410 SAH "O4'" O N N 411 SAH "C3'" C N S 412 SAH "O3'" O N N 413 SAH "C2'" C N R 414 SAH "O2'" O N N 415 SAH "C1'" C N R 416 SAH N9 N Y N 417 SAH C8 C Y N 418 SAH N7 N Y N 419 SAH C5 C Y N 420 SAH C6 C Y N 421 SAH N6 N N N 422 SAH N1 N Y N 423 SAH C2 C Y N 424 SAH N3 N Y N 425 SAH C4 C Y N 426 SAH HN1 H N N 427 SAH HN2 H N N 428 SAH HA H N N 429 SAH HB1 H N N 430 SAH HB2 H N N 431 SAH HG1 H N N 432 SAH HG2 H N N 433 SAH HXT H N N 434 SAH "H5'1" H N N 435 SAH "H5'2" H N N 436 SAH "H4'" H N N 437 SAH "H3'" H N N 438 SAH "HO3'" H N N 439 SAH "H2'" H N N 440 SAH "HO2'" H N N 441 SAH "H1'" H N N 442 SAH H8 H N N 443 SAH HN61 H N N 444 SAH HN62 H N N 445 SAH H2 H N N 446 SER N N N N 447 SER CA C N S 448 SER C C N N 449 SER O O N N 450 SER CB C N N 451 SER OG O N N 452 SER OXT O N N 453 SER H H N N 454 SER H2 H N N 455 SER HA H N N 456 SER HB2 H N N 457 SER HB3 H N N 458 SER HG H N N 459 SER HXT H N N 460 THR N N N N 461 THR CA C N S 462 THR C C N N 463 THR O O N N 464 THR CB C N R 465 THR OG1 O N N 466 THR CG2 C N N 467 THR OXT O N N 468 THR H H N N 469 THR H2 H N N 470 THR HA H N N 471 THR HB H N N 472 THR HG1 H N N 473 THR HG21 H N N 474 THR HG22 H N N 475 THR HG23 H N N 476 THR HXT H N N 477 TRP N N N N 478 TRP CA C N S 479 TRP C C N N 480 TRP O O N N 481 TRP CB C N N 482 TRP CG C Y N 483 TRP CD1 C Y N 484 TRP CD2 C Y N 485 TRP NE1 N Y N 486 TRP CE2 C Y N 487 TRP CE3 C Y N 488 TRP CZ2 C Y N 489 TRP CZ3 C Y N 490 TRP CH2 C Y N 491 TRP OXT O N N 492 TRP H H N N 493 TRP H2 H N N 494 TRP HA H N N 495 TRP HB2 H N N 496 TRP HB3 H N N 497 TRP HD1 H N N 498 TRP HE1 H N N 499 TRP HE3 H N N 500 TRP HZ2 H N N 501 TRP HZ3 H N N 502 TRP HH2 H N N 503 TRP HXT H N N 504 TYR N N N N 505 TYR CA C N S 506 TYR C C N N 507 TYR O O N N 508 TYR CB C N N 509 TYR CG C Y N 510 TYR CD1 C Y N 511 TYR CD2 C Y N 512 TYR CE1 C Y N 513 TYR CE2 C Y N 514 TYR CZ C Y N 515 TYR OH O N N 516 TYR OXT O N N 517 TYR H H N N 518 TYR H2 H N N 519 TYR HA H N N 520 TYR HB2 H N N 521 TYR HB3 H N N 522 TYR HD1 H N N 523 TYR HD2 H N N 524 TYR HE1 H N N 525 TYR HE2 H N N 526 TYR HH H N N 527 TYR HXT H N N 528 U OP3 O N N 529 U P P N N 530 U OP1 O N N 531 U OP2 O N N 532 U "O5'" O N N 533 U "C5'" C N N 534 U "C4'" C N R 535 U "O4'" O N N 536 U "C3'" C N S 537 U "O3'" O N N 538 U "C2'" C N R 539 U "O2'" O N N 540 U "C1'" C N R 541 U N1 N N N 542 U C2 C N N 543 U O2 O N N 544 U N3 N N N 545 U C4 C N N 546 U O4 O N N 547 U C5 C N N 548 U C6 C N N 549 U HOP3 H N N 550 U HOP2 H N N 551 U "H5'" H N N 552 U "H5''" H N N 553 U "H4'" H N N 554 U "H3'" H N N 555 U "HO3'" H N N 556 U "H2'" H N N 557 U "HO2'" H N N 558 U "H1'" H N N 559 U H3 H N N 560 U H5 H N N 561 U H6 H N N 562 VAL N N N N 563 VAL CA C N S 564 VAL C C N N 565 VAL O O N N 566 VAL CB C N N 567 VAL CG1 C N N 568 VAL CG2 C N N 569 VAL OXT O N N 570 VAL H H N N 571 VAL H2 H N N 572 VAL HA H N N 573 VAL HB H N N 574 VAL HG11 H N N 575 VAL HG12 H N N 576 VAL HG13 H N N 577 VAL HG21 H N N 578 VAL HG22 H N N 579 VAL HG23 H N N 580 VAL HXT H N N 581 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PHE N CA sing N N 352 PHE N H sing N N 353 PHE N H2 sing N N 354 PHE CA C sing N N 355 PHE CA CB sing N N 356 PHE CA HA sing N N 357 PHE C O doub N N 358 PHE C OXT sing N N 359 PHE CB CG sing N N 360 PHE CB HB2 sing N N 361 PHE CB HB3 sing N N 362 PHE CG CD1 doub Y N 363 PHE CG CD2 sing Y N 364 PHE CD1 CE1 sing Y N 365 PHE CD1 HD1 sing N N 366 PHE CD2 CE2 doub Y N 367 PHE CD2 HD2 sing N N 368 PHE CE1 CZ doub Y N 369 PHE CE1 HE1 sing N N 370 PHE CE2 CZ sing Y N 371 PHE CE2 HE2 sing N N 372 PHE CZ HZ sing N N 373 PHE OXT HXT sing N N 374 PRO N CA sing N N 375 PRO N CD sing N N 376 PRO N H sing N N 377 PRO CA C sing N N 378 PRO CA CB sing N N 379 PRO CA HA sing N N 380 PRO C O doub N N 381 PRO C OXT sing N N 382 PRO CB CG sing N N 383 PRO CB HB2 sing N N 384 PRO CB HB3 sing N N 385 PRO CG CD sing N N 386 PRO CG HG2 sing N N 387 PRO CG HG3 sing N N 388 PRO CD HD2 sing N N 389 PRO CD HD3 sing N N 390 PRO OXT HXT sing N N 391 SAH N CA sing N N 392 SAH N HN1 sing N N 393 SAH N HN2 sing N N 394 SAH CA CB sing N N 395 SAH CA C sing N N 396 SAH CA HA sing N N 397 SAH CB CG sing N N 398 SAH CB HB1 sing N N 399 SAH CB HB2 sing N N 400 SAH CG SD sing N N 401 SAH CG HG1 sing N N 402 SAH CG HG2 sing N N 403 SAH SD "C5'" sing N N 404 SAH C O doub N N 405 SAH C OXT sing N N 406 SAH OXT HXT sing N N 407 SAH "C5'" "C4'" sing N N 408 SAH "C5'" "H5'1" sing N N 409 SAH "C5'" "H5'2" sing N N 410 SAH "C4'" "O4'" sing N N 411 SAH "C4'" "C3'" sing N N 412 SAH "C4'" "H4'" sing N N 413 SAH "O4'" "C1'" sing N N 414 SAH "C3'" "O3'" sing N N 415 SAH "C3'" "C2'" sing N N 416 SAH "C3'" "H3'" sing N N 417 SAH "O3'" "HO3'" sing N N 418 SAH "C2'" "O2'" sing N N 419 SAH "C2'" "C1'" sing N N 420 SAH "C2'" "H2'" sing N N 421 SAH "O2'" "HO2'" sing N N 422 SAH "C1'" N9 sing N N 423 SAH "C1'" "H1'" sing N N 424 SAH N9 C8 sing Y N 425 SAH N9 C4 sing Y N 426 SAH C8 N7 doub Y N 427 SAH C8 H8 sing N N 428 SAH N7 C5 sing Y N 429 SAH C5 C6 sing Y N 430 SAH C5 C4 doub Y N 431 SAH C6 N6 sing N N 432 SAH C6 N1 doub Y N 433 SAH N6 HN61 sing N N 434 SAH N6 HN62 sing N N 435 SAH N1 C2 sing Y N 436 SAH C2 N3 doub Y N 437 SAH C2 H2 sing N N 438 SAH N3 C4 sing Y N 439 SER N CA sing N N 440 SER N H sing N N 441 SER N H2 sing N N 442 SER CA C sing N N 443 SER CA CB sing N N 444 SER CA HA sing N N 445 SER C O doub N N 446 SER C OXT sing N N 447 SER CB OG sing N N 448 SER CB HB2 sing N N 449 SER CB HB3 sing N N 450 SER OG HG sing N N 451 SER OXT HXT sing N N 452 THR N CA sing N N 453 THR N H sing N N 454 THR N H2 sing N N 455 THR CA C sing N N 456 THR CA CB sing N N 457 THR CA HA sing N N 458 THR C O doub N N 459 THR C OXT sing N N 460 THR CB OG1 sing N N 461 THR CB CG2 sing N N 462 THR CB HB sing N N 463 THR OG1 HG1 sing N N 464 THR CG2 HG21 sing N N 465 THR CG2 HG22 sing N N 466 THR CG2 HG23 sing N N 467 THR OXT HXT sing N N 468 TRP N CA sing N N 469 TRP N H sing N N 470 TRP N H2 sing N N 471 TRP CA C sing N N 472 TRP CA CB sing N N 473 TRP CA HA sing N N 474 TRP C O doub N N 475 TRP C OXT sing N N 476 TRP CB CG sing N N 477 TRP CB HB2 sing N N 478 TRP CB HB3 sing N N 479 TRP CG CD1 doub Y N 480 TRP CG CD2 sing Y N 481 TRP CD1 NE1 sing Y N 482 TRP CD1 HD1 sing N N 483 TRP CD2 CE2 doub Y N 484 TRP CD2 CE3 sing Y N 485 TRP NE1 CE2 sing Y N 486 TRP NE1 HE1 sing N N 487 TRP CE2 CZ2 sing Y N 488 TRP CE3 CZ3 doub Y N 489 TRP CE3 HE3 sing N N 490 TRP CZ2 CH2 doub Y N 491 TRP CZ2 HZ2 sing N N 492 TRP CZ3 CH2 sing Y N 493 TRP CZ3 HZ3 sing N N 494 TRP CH2 HH2 sing N N 495 TRP OXT HXT sing N N 496 TYR N CA sing N N 497 TYR N H sing N N 498 TYR N H2 sing N N 499 TYR CA C sing N N 500 TYR CA CB sing N N 501 TYR CA HA sing N N 502 TYR C O doub N N 503 TYR C OXT sing N N 504 TYR CB CG sing N N 505 TYR CB HB2 sing N N 506 TYR CB HB3 sing N N 507 TYR CG CD1 doub Y N 508 TYR CG CD2 sing Y N 509 TYR CD1 CE1 sing Y N 510 TYR CD1 HD1 sing N N 511 TYR CD2 CE2 doub Y N 512 TYR CD2 HD2 sing N N 513 TYR CE1 CZ doub Y N 514 TYR CE1 HE1 sing N N 515 TYR CE2 CZ sing Y N 516 TYR CE2 HE2 sing N N 517 TYR CZ OH sing N N 518 TYR OH HH sing N N 519 TYR OXT HXT sing N N 520 U OP3 P sing N N 521 U OP3 HOP3 sing N N 522 U P OP1 doub N N 523 U P OP2 sing N N 524 U P "O5'" sing N N 525 U OP2 HOP2 sing N N 526 U "O5'" "C5'" sing N N 527 U "C5'" "C4'" sing N N 528 U "C5'" "H5'" sing N N 529 U "C5'" "H5''" sing N N 530 U "C4'" "O4'" sing N N 531 U "C4'" "C3'" sing N N 532 U "C4'" "H4'" sing N N 533 U "O4'" "C1'" sing N N 534 U "C3'" "O3'" sing N N 535 U "C3'" "C2'" sing N N 536 U "C3'" "H3'" sing N N 537 U "O3'" "HO3'" sing N N 538 U "C2'" "O2'" sing N N 539 U "C2'" "C1'" sing N N 540 U "C2'" "H2'" sing N N 541 U "O2'" "HO2'" sing N N 542 U "C1'" N1 sing N N 543 U "C1'" "H1'" sing N N 544 U N1 C2 sing N N 545 U N1 C6 sing N N 546 U C2 O2 doub N N 547 U C2 N3 sing N N 548 U N3 C4 sing N N 549 U N3 H3 sing N N 550 U C4 O4 doub N N 551 U C4 C5 sing N N 552 U C5 C6 doub N N 553 U C5 H5 sing N N 554 U C6 H6 sing N N 555 VAL N CA sing N N 556 VAL N H sing N N 557 VAL N H2 sing N N 558 VAL CA C sing N N 559 VAL CA CB sing N N 560 VAL CA HA sing N N 561 VAL C O doub N N 562 VAL C OXT sing N N 563 VAL CB CG1 sing N N 564 VAL CB CG2 sing N N 565 VAL CB HB sing N N 566 VAL CG1 HG11 sing N N 567 VAL CG1 HG12 sing N N 568 VAL CG1 HG13 sing N N 569 VAL CG2 HG21 sing N N 570 VAL CG2 HG22 sing N N 571 VAL CG2 HG23 sing N N 572 VAL OXT HXT sing N N 573 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3FTF 'double helix' 3FTF 'a-form double helix' 3FTF 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B A 1 1_555 C U 22 1_555 -4.112 -1.821 -0.508 3.522 -7.679 -98.901 1 C_A1507:U1528_D C 1507 ? D 1528 ? 24 4 1 B A 2 1_555 C U 21 1_555 -5.834 -1.938 -0.320 14.453 -17.277 -39.954 2 C_A1508:U1527_D C 1508 ? D 1527 ? ? ? 1 B C 3 1_555 C G 20 1_555 0.015 -0.133 -0.661 13.978 -17.477 -3.908 3 C_C1509:G1526_D C 1509 ? D 1526 ? 19 1 1 B C 4 1_555 C G 19 1_555 -0.070 -0.188 -0.214 8.750 -14.488 -0.478 4 C_C1510:G1525_D C 1510 ? D 1525 ? 19 1 1 B G 5 1_555 C C 18 1_555 -0.382 -0.359 -0.089 -3.413 -13.948 0.450 5 C_G1511:C1524_D C 1511 ? D 1524 ? 19 1 1 B U 6 1_555 C G 17 1_555 2.802 -0.704 -0.027 2.240 -13.007 2.460 6 C_U1512:G1523_D C 1512 ? D 1523 ? 28 ? 1 B A 7 1_555 C U 16 1_555 0.454 0.059 0.063 -6.107 -7.334 15.252 7 C_A1513:U1522_D C 1513 ? D 1522 ? ? 1 1 B G 8 1_555 C C 15 1_555 -0.698 -0.171 0.155 8.029 3.153 3.256 8 C_G1514:C1521_D C 1514 ? D 1521 ? 19 1 1 B G 9 1_555 C C 14 1_555 0.072 -0.038 -0.615 -9.902 -9.194 3.468 9 C_G1515:C1520_D C 1515 ? D 1520 ? 19 1 1 B G 10 1_555 C A 13 1_555 6.782 -3.999 -0.036 -3.403 -0.891 -7.787 10 C_G1516:A1519_D C 1516 ? D 1519 ? 11 10 1 B G 11 1_555 C A 12 1_555 7.049 -5.683 0.325 10.199 1.895 -12.313 11 C_G1517:A1518_D C 1517 ? D 1518 ? ? 10 1 B A 12 1_555 C G 11 1_555 -6.471 -4.403 0.758 -15.257 -10.004 1.675 12 C_A1518:G1517_D C 1518 ? D 1517 ? 11 5 1 B A 13 1_555 C G 10 1_555 -6.954 -4.102 -0.114 3.224 -8.095 -4.709 13 C_A1519:G1516_D C 1519 ? D 1516 ? 11 10 1 B C 14 1_555 C G 9 1_555 -0.280 0.219 -0.452 9.486 -6.126 6.205 14 C_C1520:G1515_D C 1520 ? D 1515 ? 19 1 1 B C 15 1_555 C G 8 1_555 -0.788 -0.179 -0.305 -5.001 -3.412 -0.043 15 C_C1521:G1514_D C 1521 ? D 1514 ? 19 1 1 B U 16 1_555 C A 7 1_555 0.298 0.102 0.305 1.010 -4.381 3.317 16 C_U1522:A1513_D C 1522 ? D 1513 ? 20 1 1 B G 17 1_555 C U 6 1_555 -2.795 -0.724 0.163 7.041 -15.159 0.231 17 C_G1523:U1512_D C 1523 ? D 1512 ? 28 ? 1 B C 18 1_555 C G 5 1_555 0.309 -0.186 -0.217 12.276 -17.161 -4.430 18 C_C1524:G1511_D C 1524 ? D 1511 ? 19 1 1 B G 19 1_555 C C 4 1_555 0.816 -0.005 0.151 -4.608 -12.116 1.529 19 C_G1525:C1510_D C 1525 ? D 1510 ? 19 1 1 B G 20 1_555 C C 3 1_555 -0.028 -0.064 -0.430 -15.292 -18.278 -0.361 20 C_G1526:C1509_D C 1526 ? D 1509 ? 19 1 1 B U 21 1_555 C A 2 1_555 -0.711 0.003 0.138 -7.805 -10.375 -3.547 21 C_U1527:A1508_D C 1527 ? D 1508 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B A 1 1_555 C U 22 1_555 B A 2 1_555 C U 21 1_555 3.223 -2.027 2.873 -15.018 14.531 46.469 -3.036 -4.454 1.197 17.422 18.005 50.713 1 CC_A1507A1508:U1527U1528_DD C 1507 ? D 1528 ? C 1508 ? D 1527 ? 1 B A 2 1_555 C U 21 1_555 B C 3 1_555 C G 20 1_555 1.418 -1.370 3.586 -2.178 17.165 60.054 -2.144 -1.475 3.083 16.778 2.129 62.273 2 CC_A1508C1509:G1526U1527_DD C 1508 ? D 1527 ? C 1509 ? D 1526 ? 1 B C 3 1_555 C G 20 1_555 B C 4 1_555 C G 19 1_555 -0.117 -1.377 3.490 -5.211 17.071 31.401 -4.589 -0.532 2.436 28.813 8.795 36.008 3 CC_C1509C1510:G1525G1526_DD C 1509 ? D 1526 ? C 1510 ? D 1525 ? 1 B C 4 1_555 C G 19 1_555 B G 5 1_555 C C 18 1_555 0.076 -1.670 3.447 -3.088 14.644 29.516 -5.275 -0.626 2.359 26.690 5.628 33.018 4 CC_C1510G1511:C1524G1525_DD C 1510 ? D 1525 ? C 1511 ? D 1524 ? 1 B G 5 1_555 C C 18 1_555 B U 6 1_555 C G 17 1_555 0.002 -1.501 3.194 -1.356 1.177 43.355 -2.140 -0.130 3.153 1.592 1.834 43.391 5 CC_G1511U1512:G1523C1524_DD C 1511 ? D 1524 ? C 1512 ? D 1523 ? 1 B U 6 1_555 C G 17 1_555 B A 7 1_555 C U 16 1_555 0.695 -1.609 2.968 6.270 15.706 29.142 -4.874 -0.369 1.975 28.399 -11.337 33.601 6 CC_U1512A1513:U1522G1523_DD C 1512 ? D 1523 ? C 1513 ? D 1522 ? 1 B A 7 1_555 C U 16 1_555 B G 8 1_555 C C 15 1_555 -0.522 -2.051 2.874 -2.046 1.422 18.571 -6.954 0.664 2.751 4.380 6.304 18.736 7 CC_A1513G1514:C1521U1522_DD C 1513 ? D 1522 ? C 1514 ? D 1521 ? 1 B G 8 1_555 C C 15 1_555 B G 9 1_555 C C 14 1_555 0.107 -2.204 3.688 4.336 10.388 36.700 -4.711 0.403 2.971 16.041 -6.696 38.331 8 CC_G1514G1515:C1520C1521_DD C 1514 ? D 1521 ? C 1515 ? D 1520 ? 1 B G 9 1_555 C C 14 1_555 B G 10 1_555 C A 13 1_555 -0.766 -0.981 3.189 0.049 8.113 63.060 -1.273 0.729 3.056 7.723 -0.046 63.527 9 CC_G1515G1516:A1519C1520_DD C 1515 ? D 1520 ? C 1516 ? D 1519 ? 1 B G 10 1_555 C A 13 1_555 B G 11 1_555 C A 12 1_555 0.254 -0.702 3.216 12.081 3.089 40.824 -1.275 0.855 3.108 4.309 -16.851 42.608 10 CC_G1516G1517:A1518A1519_DD C 1516 ? D 1519 ? C 1517 ? D 1518 ? 1 B G 11 1_555 C A 12 1_555 B A 12 1_555 C G 11 1_555 1.301 -1.774 3.936 2.980 -2.418 -10.398 13.192 11.678 2.959 12.783 15.756 -11.082 11 CC_G1517A1518:G1517A1518_DD C 1517 ? D 1518 ? C 1518 ? D 1517 ? 1 B A 12 1_555 C G 11 1_555 B A 13 1_555 C G 10 1_555 -0.961 -1.366 2.992 -4.498 5.570 25.326 -4.344 1.030 2.759 12.391 10.007 26.302 12 CC_A1518A1519:G1516G1517_DD C 1518 ? D 1517 ? C 1519 ? D 1516 ? 1 B A 13 1_555 C G 10 1_555 B C 14 1_555 C G 9 1_555 1.081 -0.476 3.192 1.141 4.983 62.617 -0.675 -0.988 3.168 4.786 -1.096 62.804 13 CC_A1519C1520:G1515G1516_DD C 1519 ? D 1516 ? C 1520 ? D 1515 ? 1 B C 14 1_555 C G 9 1_555 B C 15 1_555 C G 8 1_555 -0.161 -2.509 3.756 1.129 4.315 25.709 -6.837 0.692 3.288 9.605 -2.513 26.086 14 CC_C1520C1521:G1514G1515_DD C 1520 ? D 1515 ? C 1521 ? D 1514 ? 1 B C 15 1_555 C G 8 1_555 B U 16 1_555 C A 7 1_555 -0.456 -1.405 3.350 -4.189 1.033 29.337 -2.970 -0.016 3.331 2.026 8.214 29.645 15 CC_C1521U1522:A1513G1514_DD C 1521 ? D 1514 ? C 1522 ? D 1513 ? 1 B U 16 1_555 C A 7 1_555 B G 17 1_555 C U 6 1_555 -0.014 -1.813 2.693 -2.251 9.555 22.297 -6.440 -0.471 1.769 23.310 5.492 24.337 16 CC_U1522G1523:U1512A1513_DD C 1522 ? D 1513 ? C 1523 ? D 1512 ? 1 B G 17 1_555 C U 6 1_555 B C 18 1_555 C G 5 1_555 -0.270 -1.047 3.159 1.209 3.790 43.888 -1.736 0.468 3.055 5.058 -1.614 44.059 17 CC_G1523C1524:G1511U1512_DD C 1523 ? D 1512 ? C 1524 ? D 1511 ? 1 B C 18 1_555 C G 5 1_555 B G 19 1_555 C C 4 1_555 0.175 -1.919 3.552 -2.397 10.332 32.175 -4.960 -0.686 2.800 18.040 4.185 33.834 18 CC_C1524G1525:C1510G1511_DD C 1524 ? D 1511 ? C 1525 ? D 1510 ? 1 B G 19 1_555 C C 4 1_555 B G 20 1_555 C C 3 1_555 -0.698 -1.870 3.506 1.956 8.369 28.503 -5.370 1.764 2.802 16.528 -3.863 29.744 19 CC_G1525G1526:C1509C1510_DD C 1525 ? D 1510 ? C 1526 ? D 1509 ? 1 B G 20 1_555 C C 3 1_555 B U 21 1_555 C A 2 1_555 -0.268 -1.181 3.064 -5.397 9.391 30.596 -3.592 -0.369 2.606 17.136 9.848 32.414 20 CC_G1526U1527:A1508C1509_DD C 1526 ? D 1509 ? C 1527 ? D 1508 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 S-ADENOSYL-L-HOMOCYSTEINE SAH 4 'POTASSIUM ION' K 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3FTC _pdbx_initial_refinement_model.details 'PDB entry 3FTC' #