data_3FTH # _entry.id 3FTH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FTH pdb_00003fth 10.2210/pdb3fth/pdb RCSB RCSB051022 ? ? WWPDB D_1000051022 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_entity_src_syn 2 3 'Structure model' software 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_entity_src_syn.details' 2 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 3 3 'Structure model' '_pdbx_entity_src_syn.organism_common_name' 4 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3FTH _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-01-13 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3FOD . unspecified PDB 3FPO . unspecified PDB 3FQP . unspecified PDB 3FR1 . unspecified PDB 3FTK . unspecified PDB 3FTL . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wiltzius, J.J.W.' 1 'Sawaya, M.R.' 2 'Eisenberg, D.' 3 # _citation.id primary _citation.title 'Molecular mechanisms for protein-encoded inheritance' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 16 _citation.page_first 973 _citation.page_last 978 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19684598 _citation.pdbx_database_id_DOI 10.1038/nsmb.1643 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wiltzius, J.J.' 1 ? primary 'Landau, M.' 2 ? primary 'Nelson, R.' 3 ? primary 'Sawaya, M.R.' 4 ? primary 'Apostol, M.I.' 5 ? primary 'Goldschmidt, L.' 6 ? primary 'Soriaga, A.B.' 7 ? primary 'Cascio, D.' 8 ? primary 'Rajashankar, K.' 9 ? primary 'Eisenberg, D.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'NFLVHSS heptapeptide from Islet Amyloid Polypeptide' 803.883 2 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code NFLVHSS _entity_poly.pdbx_seq_one_letter_code_can NFLVHSS _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 PHE n 1 3 LEU n 1 4 VAL n 1 5 HIS n 1 6 SER n 1 7 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 1 1 ASN ASN A . n A 1 2 PHE 2 2 2 PHE PHE A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 SER 7 7 7 SER SER A . n B 1 1 ASN 1 1 1 ASN ASN B . n B 1 2 PHE 2 2 2 PHE PHE B . n B 1 3 LEU 3 3 3 LEU LEU B . n B 1 4 VAL 4 4 4 VAL VAL B . n B 1 5 HIS 5 5 5 HIS HIS B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 SER 7 7 7 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 8 1 SO4 SO4 A . D 3 HOH 1 9 4 HOH HOH A . D 3 HOH 2 10 6 HOH HOH A . D 3 HOH 3 11 7 HOH HOH A . D 3 HOH 4 12 2 HOH HOH A . E 3 HOH 1 9 3 HOH HOH B . E 3 HOH 2 10 5 HOH HOH B . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 6 # _cell.length_a 9.725 _cell.length_b 21.600 _cell.length_c 26.086 _cell.angle_alpha 90.000 _cell.angle_beta 95.560 _cell.angle_gamma 90.000 _cell.entry_id 3FTH _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 3FTH _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 2 _exptl.entry_id 3FTH _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.70 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 27.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '1.5M Ammonium Sulfate, 0.1 M Sodium acetate trihydrate pH 4.6, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-11-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E # _reflns.entry_id 3FTH _reflns.d_resolution_high 1.800 _reflns.d_resolution_low 90.000 _reflns.number_obs 932 _reflns.pdbx_Rmerge_I_obs 0.189 _reflns.pdbx_chi_squared 1.054 _reflns.pdbx_redundancy 2.800 _reflns.percent_possible_obs 95.200 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all 932 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.94 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.460 _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.122 _reflns_shell.pdbx_redundancy 2.80 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 180 _reflns_shell.percent_possible_all 89.10 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3FTH _refine.ls_d_res_high 1.840 _refine.ls_d_res_low 16.60 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 95.070 _refine.ls_number_reflns_obs 926 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.242 _refine.ls_R_factor_R_work 0.238 _refine.ls_wR_factor_R_work 0.235 _refine.ls_R_factor_R_free 0.282 _refine.ls_wR_factor_R_free 0.290 _refine.ls_percent_reflns_R_free 10.900 _refine.ls_number_reflns_R_free 101 _refine.B_iso_mean 8.193 _refine.aniso_B[1][1] -0.190 _refine.aniso_B[2][2] 0.710 _refine.aniso_B[3][3] -0.510 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.100 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.928 _refine.correlation_coeff_Fo_to_Fc_free 0.925 _refine.overall_SU_R_Cruickshank_DPI 0.318 _refine.overall_SU_R_free 0.224 _refine.pdbx_overall_ESU_R 0.322 _refine.pdbx_overall_ESU_R_Free 0.223 _refine.overall_SU_ML 0.108 _refine.overall_SU_B 3.396 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.overall_FOM_work_R_set 0.837 _refine.B_iso_max 38.59 _refine.B_iso_min 0.00 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 124 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 136 _refine_hist.d_res_high 1.840 _refine_hist.d_res_low 16.60 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 132 0.016 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 76 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 182 1.556 1.981 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 190 1.165 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 16 7.686 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 6 30.225 23.333 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20 13.671 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 22 0.112 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 140 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 28 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 76 2.180 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 28 0.581 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 124 3.246 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 56 2.367 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 56 3.044 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.84 _refine_ls_shell.d_res_low 1.892 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 89.610 _refine_ls_shell.number_reflns_R_work 64 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.255 _refine_ls_shell.R_factor_R_free 0.216 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 5 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 69 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FTH _struct.title 'NFLVHSS segment from Islet Amyloid Polypeptide (IAPP or Amylin)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FTH _struct_keywords.text 'amyloid-like protofibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3FTH _struct_ref.pdbx_db_accession 3FTH _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code NFLVHSS _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FTH A 1 ? 7 ? 3FTH 1 ? 7 ? 1 7 2 1 3FTH B 1 ? 7 ? 3FTH 1 ? 7 ? 1 7 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 660 ? 1 MORE -10 ? 1 'SSA (A^2)' 1660 ? 2 'ABSA (A^2)' 660 ? 2 MORE -8 ? 2 'SSA (A^2)' 1660 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D 1 2 B,E 2 1 A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 9.7250000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;THE AUTHORS STATE THAT THE BIOLOGICAL UNIT IS A INDEFINITELY LONG PAIR OF SHEETS (A PROTOFIBRIL). ONE SHEET FORMED BY CHAINS A AND B AND THEIR CRYSTALLOGRAPHIC TRANSLATIONS ALONG THE "A" CELL DIMENSION (E.G. X,Y,Z AND X+1,Y,Z). THE SECOND SHEET IS CONSTRUCTED FROM -X, Y+1/2,-Z AND THEIR CRYSTALLOGRAPHIC TRANSLATIONS ALONG THE "A" CELL DIMENSION (E.G. -X+1, Y+1/2,-Z). ; # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 2 ? SER A 6 ? PHE A 2 SER A 6 A 2 PHE B 2 ? SER B 6 ? PHE B 2 SER B 6 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id PHE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 2 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 2 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id SER _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 6 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id SER _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 6 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SO4 _struct_site.pdbx_auth_seq_id 8 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 8' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id ASN _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 1 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id ASN _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 1 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _pdbx_phasing_MR.entry_id 3FTH _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation ? _pdbx_phasing_MR.d_res_low_rotation ? _pdbx_phasing_MR.d_res_high_translation ? _pdbx_phasing_MR.d_res_low_translation ? _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 HIS N N N N 18 HIS CA C N S 19 HIS C C N N 20 HIS O O N N 21 HIS CB C N N 22 HIS CG C Y N 23 HIS ND1 N Y N 24 HIS CD2 C Y N 25 HIS CE1 C Y N 26 HIS NE2 N Y N 27 HIS OXT O N N 28 HIS H H N N 29 HIS H2 H N N 30 HIS HA H N N 31 HIS HB2 H N N 32 HIS HB3 H N N 33 HIS HD1 H N N 34 HIS HD2 H N N 35 HIS HE1 H N N 36 HIS HE2 H N N 37 HIS HXT H N N 38 HOH O O N N 39 HOH H1 H N N 40 HOH H2 H N N 41 LEU N N N N 42 LEU CA C N S 43 LEU C C N N 44 LEU O O N N 45 LEU CB C N N 46 LEU CG C N N 47 LEU CD1 C N N 48 LEU CD2 C N N 49 LEU OXT O N N 50 LEU H H N N 51 LEU H2 H N N 52 LEU HA H N N 53 LEU HB2 H N N 54 LEU HB3 H N N 55 LEU HG H N N 56 LEU HD11 H N N 57 LEU HD12 H N N 58 LEU HD13 H N N 59 LEU HD21 H N N 60 LEU HD22 H N N 61 LEU HD23 H N N 62 LEU HXT H N N 63 PHE N N N N 64 PHE CA C N S 65 PHE C C N N 66 PHE O O N N 67 PHE CB C N N 68 PHE CG C Y N 69 PHE CD1 C Y N 70 PHE CD2 C Y N 71 PHE CE1 C Y N 72 PHE CE2 C Y N 73 PHE CZ C Y N 74 PHE OXT O N N 75 PHE H H N N 76 PHE H2 H N N 77 PHE HA H N N 78 PHE HB2 H N N 79 PHE HB3 H N N 80 PHE HD1 H N N 81 PHE HD2 H N N 82 PHE HE1 H N N 83 PHE HE2 H N N 84 PHE HZ H N N 85 PHE HXT H N N 86 SER N N N N 87 SER CA C N S 88 SER C C N N 89 SER O O N N 90 SER CB C N N 91 SER OG O N N 92 SER OXT O N N 93 SER H H N N 94 SER H2 H N N 95 SER HA H N N 96 SER HB2 H N N 97 SER HB3 H N N 98 SER HG H N N 99 SER HXT H N N 100 SO4 S S N N 101 SO4 O1 O N N 102 SO4 O2 O N N 103 SO4 O3 O N N 104 SO4 O4 O N N 105 VAL N N N N 106 VAL CA C N S 107 VAL C C N N 108 VAL O O N N 109 VAL CB C N N 110 VAL CG1 C N N 111 VAL CG2 C N N 112 VAL OXT O N N 113 VAL H H N N 114 VAL H2 H N N 115 VAL HA H N N 116 VAL HB H N N 117 VAL HG11 H N N 118 VAL HG12 H N N 119 VAL HG13 H N N 120 VAL HG21 H N N 121 VAL HG22 H N N 122 VAL HG23 H N N 123 VAL HXT H N N 124 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 HIS N CA sing N N 17 HIS N H sing N N 18 HIS N H2 sing N N 19 HIS CA C sing N N 20 HIS CA CB sing N N 21 HIS CA HA sing N N 22 HIS C O doub N N 23 HIS C OXT sing N N 24 HIS CB CG sing N N 25 HIS CB HB2 sing N N 26 HIS CB HB3 sing N N 27 HIS CG ND1 sing Y N 28 HIS CG CD2 doub Y N 29 HIS ND1 CE1 doub Y N 30 HIS ND1 HD1 sing N N 31 HIS CD2 NE2 sing Y N 32 HIS CD2 HD2 sing N N 33 HIS CE1 NE2 sing Y N 34 HIS CE1 HE1 sing N N 35 HIS NE2 HE2 sing N N 36 HIS OXT HXT sing N N 37 HOH O H1 sing N N 38 HOH O H2 sing N N 39 LEU N CA sing N N 40 LEU N H sing N N 41 LEU N H2 sing N N 42 LEU CA C sing N N 43 LEU CA CB sing N N 44 LEU CA HA sing N N 45 LEU C O doub N N 46 LEU C OXT sing N N 47 LEU CB CG sing N N 48 LEU CB HB2 sing N N 49 LEU CB HB3 sing N N 50 LEU CG CD1 sing N N 51 LEU CG CD2 sing N N 52 LEU CG HG sing N N 53 LEU CD1 HD11 sing N N 54 LEU CD1 HD12 sing N N 55 LEU CD1 HD13 sing N N 56 LEU CD2 HD21 sing N N 57 LEU CD2 HD22 sing N N 58 LEU CD2 HD23 sing N N 59 LEU OXT HXT sing N N 60 PHE N CA sing N N 61 PHE N H sing N N 62 PHE N H2 sing N N 63 PHE CA C sing N N 64 PHE CA CB sing N N 65 PHE CA HA sing N N 66 PHE C O doub N N 67 PHE C OXT sing N N 68 PHE CB CG sing N N 69 PHE CB HB2 sing N N 70 PHE CB HB3 sing N N 71 PHE CG CD1 doub Y N 72 PHE CG CD2 sing Y N 73 PHE CD1 CE1 sing Y N 74 PHE CD1 HD1 sing N N 75 PHE CD2 CE2 doub Y N 76 PHE CD2 HD2 sing N N 77 PHE CE1 CZ doub Y N 78 PHE CE1 HE1 sing N N 79 PHE CE2 CZ sing Y N 80 PHE CE2 HE2 sing N N 81 PHE CZ HZ sing N N 82 PHE OXT HXT sing N N 83 SER N CA sing N N 84 SER N H sing N N 85 SER N H2 sing N N 86 SER CA C sing N N 87 SER CA CB sing N N 88 SER CA HA sing N N 89 SER C O doub N N 90 SER C OXT sing N N 91 SER CB OG sing N N 92 SER CB HB2 sing N N 93 SER CB HB3 sing N N 94 SER OG HG sing N N 95 SER OXT HXT sing N N 96 SO4 S O1 doub N N 97 SO4 S O2 doub N N 98 SO4 S O3 sing N N 99 SO4 S O4 sing N N 100 VAL N CA sing N N 101 VAL N H sing N N 102 VAL N H2 sing N N 103 VAL CA C sing N N 104 VAL CA CB sing N N 105 VAL CA HA sing N N 106 VAL C O doub N N 107 VAL C OXT sing N N 108 VAL CB CG1 sing N N 109 VAL CB CG2 sing N N 110 VAL CB HB sing N N 111 VAL CG1 HG11 sing N N 112 VAL CG1 HG12 sing N N 113 VAL CG1 HG13 sing N N 114 VAL CG2 HG21 sing N N 115 VAL CG2 HG22 sing N N 116 VAL CG2 HG23 sing N N 117 VAL OXT HXT sing N N 118 # _atom_sites.entry_id 3FTH _atom_sites.fract_transf_matrix[1][1] 0.102828 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010001 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.046296 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.038516 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_