HEADER HYDROLASE 15-JAN-09 3FV4 TITLE THERMOLYSIN INHIBITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 233-548; COMPND 5 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 6 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS PROTEASE PHOSPHONAMIDATE INHIBITOR, HYDROLASE, METAL-BINDING, KEYWDS 2 METALLOPROTEASE, PROTEASE, SECRETED, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR L.ENGLERT,A.BIELA,A.HEINE,G.KLEBE REVDAT 5 06-SEP-23 3FV4 1 REMARK LINK REVDAT 4 24-JUL-19 3FV4 1 REMARK REVDAT 3 15-JAN-14 3FV4 1 JRNL REVDAT 2 13-JUL-11 3FV4 1 VERSN REVDAT 1 09-FEB-10 3FV4 0 JRNL AUTH L.ENGLERT,A.BIELA,M.ZAYED,A.HEINE,D.HANGAUER,G.KLEBE JRNL TITL DISPLACEMENT OF DISORDERED WATER MOLECULES FROM HYDROPHOBIC JRNL TITL 2 POCKET CREATES ENTHALPIC SIGNATURE: BINDING OF JRNL TITL 3 PHOSPHONAMIDATE TO THE S1'-POCKET OF THERMOLYSIN. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1800 1192 2010 JRNL REFN ISSN 0006-3002 JRNL PMID 20600625 JRNL DOI 10.1016/J.BBAGEN.2010.06.009 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.174 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.173 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2381 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 47403 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.156 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.155 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 1987 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 39351 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2428 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 2763.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 10 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 11309 REMARK 3 NUMBER OF RESTRAINTS : 10604 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 ANGLE DISTANCES (A) : 0.024 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.026 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.048 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.055 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.016 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.042 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC SCALING APPLIED BY THE REMARK 3 METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56 REMARK 3 ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY ? REMARK 4 REMARK 4 3FV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR KMC REMARK 200 -2 REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47630 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 27.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47500 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1TMN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRIS/HCL, 50% DMSO, 1.9MCSCL, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.56300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.12600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.34450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.90750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.78150 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.56300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.12600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.90750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.34450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.78150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 182 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 11 CD - NE - CZ ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 16 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 16 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 89.53 -161.28 REMARK 500 THR A 26 -54.81 63.85 REMARK 500 SER A 92 -169.46 54.60 REMARK 500 SER A 107 -162.76 60.07 REMARK 500 ASN A 111 55.27 -91.42 REMARK 500 THR A 152 -96.26 -118.54 REMARK 500 ASN A 159 -142.27 47.26 REMARK 500 THR A 194 79.80 35.95 REMARK 500 ILE A 232 -61.78 -107.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 319 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 52.2 REMARK 620 3 ASP A 59 OD1 72.2 124.2 REMARK 620 4 GLN A 61 O 90.0 94.1 89.5 REMARK 620 5 HOH A1464 O 147.7 157.3 76.1 96.3 REMARK 620 6 HOH A1625 O 131.9 80.5 155.0 84.8 80.3 REMARK 620 7 HOH A1626 O 86.7 85.6 87.5 176.1 85.4 99.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 317 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 78.9 REMARK 620 3 GLU A 177 OE2 127.3 48.5 REMARK 620 4 ASP A 185 OD1 160.7 120.4 71.9 REMARK 620 5 GLU A 187 O 87.6 150.5 138.8 75.7 REMARK 620 6 GLU A 190 OE1 85.3 127.6 121.8 81.5 76.4 REMARK 620 7 GLU A 190 OE2 99.9 82.3 74.0 82.8 126.1 51.7 REMARK 620 8 HOH A1411 O 99.8 81.2 77.4 85.4 75.4 151.1 151.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 321 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 104.2 REMARK 620 3 GLU A 166 OE2 124.0 97.0 REMARK 620 4 1U4 A 322 O55 112.5 125.4 94.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 318 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 90.7 REMARK 620 3 ASP A 185 OD2 89.4 90.0 REMARK 620 4 GLU A 190 OE2 84.3 171.1 82.6 REMARK 620 5 HOH A1621 O 172.4 94.2 96.3 91.5 REMARK 620 6 HOH A1623 O 85.6 89.6 175.0 97.3 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 320 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 O 76.6 REMARK 620 3 THR A 194 OG1 77.8 74.2 REMARK 620 4 ILE A 197 O 153.9 79.7 106.0 REMARK 620 5 ASP A 200 OD1 124.1 135.2 73.1 80.8 REMARK 620 6 HOH A1574 O 83.3 150.0 123.2 113.5 74.7 REMARK 620 7 HOH A1628 O 86.8 81.8 153.9 79.1 132.8 74.9 REMARK 620 N 1 2 3 4 5 6 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE ENZYME INHIBITOR REMARK 630 MOLECULE NAME: N-[(S)-({[(BENZYLOXY)CARBONYL]AMINO}METHYL)(HYDROXY) REMARK 630 PHOSPHORYL]-L-PHENYLALANYL-L-LEUCINE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 1U4 A 322 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ PGL PHE LEU REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1U4 A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 326 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ELF RELATED DB: PDB REMARK 900 THERMOLYSIN IN COMPLEX WITH N-[(S)-{{[BENZYLOXY)CARBONYL]AMINO} REMARK 900 METHYL}(HYDROXY)PHOSPHORYL]-L-VALYL-L-LEUCINE REMARK 900 RELATED ID: 4TMN RELATED DB: PDB REMARK 900 THERMOLYSIN IN COMPLEX WITH CBZ-PHE-P-LEU-ALA REMARK 900 RELATED ID: 5TMN RELATED DB: PDB REMARK 900 THERMOLYSIN IN COMPLEX WITH CBZ-GLY-LEU-LEU DBREF 3FV4 A 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET CA A 317 1 HET CA A 318 1 HET CA A 319 1 HET CA A 320 1 HET ZN A 321 1 HET 1U4 A 322 35 HET GOL A 323 6 HET GOL A 324 6 HET DMS A 325 4 HET DMS A 326 4 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM 1U4 N-[(S)-({[(BENZYLOXY)CARBONYL]AMINO}METHYL)(HYDROXY) HETNAM 2 1U4 PHOSPHORYL]-L-PHENYLALANYL-L-LEUCINE HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA 4(CA 2+) FORMUL 6 ZN ZN 2+ FORMUL 7 1U4 C24 H32 N3 O7 P FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 DMS 2(C2 H6 O S) FORMUL 12 HOH *275(H2 O) HELIX 1 1 ALA A 64 TYR A 66 5 3 HELIX 2 2 ASP A 67 ASN A 89 1 23 HELIX 3 3 PRO A 132 GLY A 135 5 4 HELIX 4 4 GLY A 136 THR A 152 1 17 HELIX 5 5 GLN A 158 ASN A 181 1 24 HELIX 6 6 ASP A 207 GLY A 212 5 6 HELIX 7 7 HIS A 216 ARG A 220 5 5 HELIX 8 8 THR A 224 VAL A 230 1 7 HELIX 9 9 ASN A 233 GLY A 247 1 15 HELIX 10 10 GLY A 259 TYR A 274 1 16 HELIX 11 11 ASN A 280 GLY A 297 1 18 HELIX 12 12 SER A 300 VAL A 313 1 14 SHEET 1 A 5 ALA A 56 ASP A 57 0 SHEET 2 A 5 TYR A 28 TYR A 29 -1 N TYR A 28 O ASP A 57 SHEET 3 A 5 GLN A 17 TYR A 24 -1 N THR A 23 O TYR A 29 SHEET 4 A 5 THR A 4 ARG A 11 -1 N THR A 4 O TYR A 24 SHEET 5 A 5 GLN A 61 PHE A 62 1 O PHE A 62 N VAL A 9 SHEET 1 B 3 GLN A 31 ASP A 32 0 SHEET 2 B 3 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 B 3 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 C 5 GLN A 31 ASP A 32 0 SHEET 2 C 5 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 C 5 ILE A 100 TYR A 106 1 O ILE A 100 N PHE A 40 SHEET 4 C 5 MET A 120 GLY A 123 1 O MET A 120 N ARG A 101 SHEET 5 C 5 ALA A 113 TRP A 115 -1 N PHE A 114 O VAL A 121 SHEET 1 D 2 GLU A 187 ILE A 188 0 SHEET 2 D 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 E 2 GLY A 248 HIS A 250 0 SHEET 2 E 2 VAL A 253 VAL A 255 -1 O VAL A 255 N GLY A 248 LINK OD1 ASP A 57 CA CA A 319 1555 1555 2.52 LINK OD2 ASP A 57 CA CA A 319 1555 1555 2.36 LINK OD1 ASP A 59 CA CA A 319 1555 1555 2.40 LINK O GLN A 61 CA CA A 319 1555 1555 2.29 LINK OD2 ASP A 138 CA CA A 317 1555 1555 2.30 LINK NE2 HIS A 142 ZN ZN A 321 1555 1555 2.06 LINK NE2 HIS A 146 ZN ZN A 321 1555 1555 2.03 LINK OE2 GLU A 166 ZN ZN A 321 1555 1555 1.94 LINK OE1 GLU A 177 CA CA A 317 1555 1555 2.45 LINK OE2 GLU A 177 CA CA A 317 1555 1555 2.81 LINK OE2 GLU A 177 CA CA A 318 1555 1555 2.46 LINK O ASN A 183 CA CA A 318 1555 1555 2.33 LINK OD1 ASP A 185 CA CA A 317 1555 1555 2.54 LINK OD2 ASP A 185 CA CA A 318 1555 1555 2.39 LINK O GLU A 187 CA CA A 317 1555 1555 2.33 LINK OE1 GLU A 190 CA CA A 317 1555 1555 2.46 LINK OE2 GLU A 190 CA CA A 317 1555 1555 2.51 LINK OE2 GLU A 190 CA CA A 318 1555 1555 2.33 LINK O TYR A 193 CA CA A 320 1555 1555 2.35 LINK O THR A 194 CA CA A 320 1555 1555 2.42 LINK OG1 THR A 194 CA CA A 320 1555 1555 2.44 LINK O ILE A 197 CA CA A 320 1555 1555 2.34 LINK OD1 ASP A 200 CA CA A 320 1555 1555 2.37 LINK CA CA A 317 O HOH A1411 1555 1555 2.47 LINK CA CA A 318 O HOH A1621 1555 1555 2.28 LINK CA CA A 318 O HOH A1623 1555 1555 2.38 LINK CA CA A 319 O HOH A1464 1555 1555 2.42 LINK CA CA A 319 O HOH A1625 1555 1555 2.45 LINK CA CA A 319 O HOH A1626 1555 1555 2.30 LINK CA CA A 320 O HOH A1574 1555 1555 2.43 LINK CA CA A 320 O HOH A1628 1555 1555 2.35 LINK ZN ZN A 321 O55 1U4 A 322 1555 1555 1.99 CISPEP 1 LEU A 50 PRO A 51 0 6.35 SITE 1 AC1 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC1 6 GLU A 190 HOH A1411 SITE 1 AC2 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC2 6 HOH A1621 HOH A1623 SITE 1 AC3 6 ASP A 57 ASP A 59 GLN A 61 HOH A1464 SITE 2 AC3 6 HOH A1625 HOH A1626 SITE 1 AC4 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC4 6 HOH A1574 HOH A1628 SITE 1 AC5 4 HIS A 142 HIS A 146 GLU A 166 1U4 A 322 SITE 1 AC6 23 TYR A 106 ASN A 111 ASN A 112 ALA A 113 SITE 2 AC6 23 PHE A 114 TRP A 115 PHE A 130 VAL A 139 SITE 3 AC6 23 HIS A 142 GLU A 143 HIS A 146 TYR A 157 SITE 4 AC6 23 GLU A 166 ILE A 188 LEU A 202 ARG A 203 SITE 5 AC6 23 HIS A 231 ZN A 321 GOL A 323 DMS A 325 SITE 6 AC6 23 HOH A1515 HOH A1540 HOH A1584 SITE 1 AC7 9 PHE A 114 TRP A 115 GLU A 143 HIS A 146 SITE 2 AC7 9 TYR A 157 1U4 A 322 HOH A1408 HOH A1463 SITE 3 AC7 9 HOH A1479 SITE 1 AC8 9 GLY A 109 TYR A 110 ASN A 111 ASN A 112 SITE 2 AC8 9 GLN A 158 HOH A1457 HOH A1513 HOH A1565 SITE 3 AC8 9 HOH A1658 SITE 1 AC9 4 TYR A 110 ASN A 112 PHE A 114 1U4 A 322 SITE 1 BC1 6 TYR A 66 HIS A 216 SER A 218 TYR A 251 SITE 2 BC1 6 HOH A1600 HOH A1632 CRYST1 92.830 92.830 130.689 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010772 0.006219 0.000000 0.00000 SCALE2 0.000000 0.012439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007652 0.00000