HEADER TRANSFERASE 15-JAN-09 3FV8 TITLE JNK3 BOUND TO PIPERAZINE AMIDE INHIBITOR, SR2774. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 10; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: STRESS-ACTIVATED PROTEIN KINASE JNK3, C-JUN N-TERMINAL COMPND 5 KINASE 3, MAP KINASE P49 3F12; COMPND 6 EC: 2.7.11.24; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JNK3, JNK3A, MAPK10, PRKM10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST 14 KEYWDS JNK3, PROTEIN-INHIBITOR COMPLEX, ALTERNATIVE SPLICING, ATP-BINDING, KEYWDS 2 CHROMOSOMAL REARRANGEMENT, CYTOPLASM, EPILEPSY, KINASE, NUCLEOTIDE- KEYWDS 3 BINDING, PHOSPHOPROTEIN, SERINE/THREONINE-PROTEIN KINASE, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.HABEL REVDAT 4 06-SEP-23 3FV8 1 REMARK LINK ATOM REVDAT 3 16-AUG-17 3FV8 1 SOURCE REMARK REVDAT 2 30-JUN-09 3FV8 1 JRNL REVDAT 1 07-APR-09 3FV8 0 JRNL AUTH Y.SHIN,W.CHEN,J.HABEL,D.DUCKETT,Y.Y.LING,M.KOENIG,Y.HE, JRNL AUTH 2 T.VOJKOVSKY,P.LOGRASSO,T.M.KAMENECKA JRNL TITL SYNTHESIS AND SAR OF PIPERAZINE AMIDES AS NOVEL C-JUN JRNL TITL 2 N-TERMINAL KINASE (JNK) INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 19 3344 2009 JRNL REFN ISSN 0960-894X JRNL PMID 19433357 JRNL DOI 10.1016/J.BMCL.2009.03.086 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.2 REMARK 3 NUMBER OF REFLECTIONS : 14109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7890 - 4.9100 0.98 1548 172 0.1697 0.2382 REMARK 3 2 4.9100 - 3.8982 0.98 1492 163 0.1419 0.2316 REMARK 3 3 3.8982 - 3.4057 0.98 1464 163 0.1656 0.2526 REMARK 3 4 3.4057 - 3.0944 0.98 1467 164 0.2037 0.2896 REMARK 3 5 3.0944 - 2.8727 0.99 1456 163 0.2303 0.3322 REMARK 3 6 2.8727 - 2.7034 0.95 1401 157 0.2381 0.3373 REMARK 3 7 2.7034 - 2.5680 0.91 1341 148 0.2556 0.3655 REMARK 3 8 2.5680 - 2.4562 0.79 1170 130 0.2619 0.3887 REMARK 3 9 2.4562 - 2.3617 0.60 885 87 0.2640 0.3280 REMARK 3 10 2.3617 - 2.2802 0.33 482 56 0.2458 0.3732 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 50.06 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2827 REMARK 3 ANGLE : 1.050 3811 REMARK 3 CHIRALITY : 0.067 413 REMARK 3 PLANARITY : 0.009 487 REMARK 3 DIHEDRAL : 16.660 1081 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 46:95 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5370 -46.4901 14.1164 REMARK 3 T TENSOR REMARK 3 T11: 0.2154 T22: 0.3170 REMARK 3 T33: 0.2645 T12: -0.0545 REMARK 3 T13: -0.0273 T23: 0.0841 REMARK 3 L TENSOR REMARK 3 L11: 0.2034 L22: 0.2400 REMARK 3 L33: 0.6313 L12: -0.0121 REMARK 3 L13: 0.2476 L23: -0.3579 REMARK 3 S TENSOR REMARK 3 S11: 0.1560 S12: 0.1491 S13: 0.0431 REMARK 3 S21: 0.3484 S22: -0.2822 S23: -0.3489 REMARK 3 S31: -0.1494 S32: 0.3908 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 96:107 REMARK 3 ORIGIN FOR THE GROUP (A): -30.5156 -42.0731 10.1855 REMARK 3 T TENSOR REMARK 3 T11: 0.3604 T22: 0.6929 REMARK 3 T33: 0.6262 T12: -0.0165 REMARK 3 T13: 0.0864 T23: 0.2470 REMARK 3 L TENSOR REMARK 3 L11: 0.0357 L22: 0.0188 REMARK 3 L33: 0.0213 L12: 0.0020 REMARK 3 L13: -0.0384 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: -0.6103 S13: 0.0183 REMARK 3 S21: 0.0147 S22: -0.0372 S23: 0.2805 REMARK 3 S31: -0.2512 S32: 0.1431 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 108:209 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1528 -32.2550 4.3339 REMARK 3 T TENSOR REMARK 3 T11: 0.2214 T22: 0.1449 REMARK 3 T33: 0.1980 T12: -0.0816 REMARK 3 T13: 0.0412 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.5675 L22: 0.6222 REMARK 3 L33: 0.0302 L12: -0.6284 REMARK 3 L13: 0.3622 L23: -0.6976 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.0979 S13: -0.0387 REMARK 3 S21: -0.2558 S22: 0.0760 S23: -0.1142 REMARK 3 S31: 0.0875 S32: -0.0598 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 210:362 REMARK 3 ORIGIN FOR THE GROUP (A): -22.8974 -11.1333 6.9375 REMARK 3 T TENSOR REMARK 3 T11: 0.1734 T22: 0.3787 REMARK 3 T33: 0.0963 T12: 0.1021 REMARK 3 T13: 0.0285 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.7423 L22: 2.8572 REMARK 3 L33: 2.1015 L12: -0.0810 REMARK 3 L13: -0.4480 L23: -2.2161 REMARK 3 S TENSOR REMARK 3 S11: -0.2261 S12: -0.2432 S13: 0.1668 REMARK 3 S21: 0.2739 S22: 0.5538 S23: 0.1006 REMARK 3 S31: -0.3560 S32: -0.8637 S33: 0.4291 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 363:382 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4566 -28.1335 -10.9093 REMARK 3 T TENSOR REMARK 3 T11: 1.5715 T22: 0.9681 REMARK 3 T33: 0.9074 T12: 0.1925 REMARK 3 T13: 0.1368 T23: -0.1074 REMARK 3 L TENSOR REMARK 3 L11: 0.0211 L22: 0.0428 REMARK 3 L33: -0.0246 L12: -0.0515 REMARK 3 L13: 0.0335 L23: -0.0454 REMARK 3 S TENSOR REMARK 3 S11: 0.3443 S12: 0.0691 S13: -0.3380 REMARK 3 S21: -0.3704 S22: 0.2159 S23: 0.3955 REMARK 3 S31: -0.0359 S32: 0.1355 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESID 383:400 REMARK 3 ORIGIN FOR THE GROUP (A): -30.2342 -48.6253 1.3146 REMARK 3 T TENSOR REMARK 3 T11: 0.3158 T22: 0.3331 REMARK 3 T33: 0.3835 T12: -0.0321 REMARK 3 T13: -0.0627 T23: 0.1399 REMARK 3 L TENSOR REMARK 3 L11: 0.0051 L22: 0.0489 REMARK 3 L33: 0.0099 L12: -0.0378 REMARK 3 L13: -0.0304 L23: -0.1019 REMARK 3 S TENSOR REMARK 3 S11: -0.1975 S12: 0.5092 S13: 0.0899 REMARK 3 S21: -0.5161 S22: 0.6800 S23: 0.2652 REMARK 3 S31: 0.3728 S32: -0.4439 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14111 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.2 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.24500 REMARK 200 FOR SHELL : 2.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (AUTO-MR) REMARK 200 STARTING MODEL: 1JNK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML JNK3 MIXED WITH 1MM AMP-PCP, REMARK 280 2MM MGCL2, 0.4MM ZWITTERGENT 3-14, AND 10% ETHYLENE GLYCOL. REMARK 280 CRYSTALS GROWN IN 0.2M NACL, 0.1M BIS-TRIS, 28-31% PEG 3350, PH REMARK 280 5.5, MICOBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.62650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.62650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.78250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.65750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.78250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.65750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.62650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.78250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.65750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.62650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.78250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.65750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 815 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 39 REMARK 465 SER A 40 REMARK 465 LYS A 41 REMARK 465 SER A 42 REMARK 465 LYS A 43 REMARK 465 VAL A 44 REMARK 465 ASP A 45 REMARK 465 THR A 213 REMARK 465 ALA A 214 REMARK 465 GLY A 215 REMARK 465 THR A 216 REMARK 465 SER A 217 REMARK 465 PHE A 218 REMARK 465 MET A 219 REMARK 465 MET A 220 REMARK 465 THR A 221 REMARK 465 PRO A 222 REMARK 465 TYR A 223 REMARK 465 VAL A 224 REMARK 465 SER A 401 REMARK 465 GLU A 402 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 74 0.77 -69.04 REMARK 500 SER A 96 -74.02 -38.94 REMARK 500 PHE A 99 33.67 -97.27 REMARK 500 GLN A 140 -54.08 -145.49 REMARK 500 ARG A 188 -14.23 84.21 REMARK 500 ARG A 227 38.68 -99.48 REMARK 500 PHE A 263 70.23 -118.91 REMARK 500 PRO A 314 157.99 -48.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 OCY A 201 -12.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JK3 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 505 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS A BREAK IN ELECTRON DENSITY BETWEEN AMINO ACIDS 366 AND REMARK 999 381. PORTIONS OF THE ELECTRON DENSITY WITHIN THE BREAK WERE FITTED REMARK 999 WITH THE FIVE UNK AMINO ACIDS. THE AUTHORS WERE UNABLE TO IDENTIFY REMARK 999 THESE AMINO ACIDS AND THEIR POSITION IN THE SEQUENCE BASED ON THE REMARK 999 ELECTRON DENSITY DBREF 3FV8 A 39 366 UNP P53779 MK10_HUMAN 39 366 DBREF 3FV8 A 381 402 UNP P53779 MK10_HUMAN 381 402 SEQRES 1 A 355 MET SER LYS SER LYS VAL ASP ASN GLN PHE TYR SER VAL SEQRES 2 A 355 GLU VAL GLY ASP SER THR PHE THR VAL LEU LYS ARG TYR SEQRES 3 A 355 GLN ASN LEU LYS PRO ILE GLY SER GLY ALA GLN GLY ILE SEQRES 4 A 355 VAL CYS ALA ALA TYR ASP ALA VAL LEU ASP ARG ASN VAL SEQRES 5 A 355 ALA ILE LYS LYS LEU SER ARG PRO PHE GLN ASN GLN THR SEQRES 6 A 355 HIS ALA LYS ARG ALA TYR ARG GLU LEU VAL LEU MET LYS SEQRES 7 A 355 OCY VAL ASN HIS LYS ASN ILE ILE SER LEU LEU ASN VAL SEQRES 8 A 355 PHE THR PRO GLN LYS THR LEU GLU GLU PHE GLN ASP VAL SEQRES 9 A 355 TYR LEU VAL MET GLU LEU MET ASP ALA ASN LEU OCY GLN SEQRES 10 A 355 VAL ILE GLN MET GLU LEU ASP HIS GLU ARG MET SER TYR SEQRES 11 A 355 LEU LEU TYR GLN MET LEU CYS GLY ILE LYS HIS LEU HIS SEQRES 12 A 355 SER ALA GLY ILE ILE HIS ARG ASP LEU LYS PRO SER ASN SEQRES 13 A 355 ILE VAL VAL LYS SER ASP OCY THR LEU LYS ILE LEU ASP SEQRES 14 A 355 PHE GLY LEU ALA ARG THR ALA GLY THR SER PHE MET MET SEQRES 15 A 355 THR PRO TYR VAL VAL THR ARG TYR TYR ARG ALA PRO GLU SEQRES 16 A 355 VAL ILE LEU GLY MET GLY TYR LYS GLU ASN VAL ASP ILE SEQRES 17 A 355 TRP SER VAL GLY CYS ILE MET GLY GLU MET VAL ARG HIS SEQRES 18 A 355 LYS ILE LEU PHE PRO GLY ARG ASP TYR ILE ASP GLN TRP SEQRES 19 A 355 ASN LYS VAL ILE GLU GLN LEU GLY THR PRO CYS PRO GLU SEQRES 20 A 355 PHE MET LYS LYS LEU GLN PRO THR VAL ARG ASN TYR VAL SEQRES 21 A 355 GLU ASN ARG PRO LYS TYR ALA GLY LEU THR PHE PRO LYS SEQRES 22 A 355 LEU PHE PRO ASP SER LEU PHE PRO ALA ASP SER GLU HIS SEQRES 23 A 355 ASN LYS LEU LYS ALA SER GLN ALA ARG ASP LEU LEU SER SEQRES 24 A 355 LYS MET LEU VAL ILE ASP PRO ALA LYS ARG ILE SER VAL SEQRES 25 A 355 ASP ASP ALA LEU GLN HIS PRO TYR ILE ASN VAL TRP TYR SEQRES 26 A 355 ASP PRO ALA UNK UNK UNK UNK UNK ASP GLU ARG GLU HIS SEQRES 27 A 355 THR ILE GLU GLU TRP LYS GLU LEU ILE TYR LYS GLU VAL SEQRES 28 A 355 MET ASN SER GLU MODRES 3FV8 OCY A 117 CYS HYDROXYETHYLCYSTEINE MODRES 3FV8 OCY A 154 CYS HYDROXYETHYLCYSTEINE MODRES 3FV8 OCY A 201 CYS HYDROXYETHYLCYSTEINE HET OCY A 117 15 HET OCY A 154 9 HET OCY A 201 9 HET JK3 A 500 25 HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HETNAM OCY HYDROXYETHYLCYSTEINE HETNAM JK3 5-BROMO-N-(3-CHLORO-2-(4-(PROP-2-YNYL)PIPERAZIN-1-YL) HETNAM 2 JK3 PHENYL)FURAN-2-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 OCY 3(C5 H11 N O3 S) FORMUL 2 JK3 C18 H17 BR CL N3 O2 FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *121(H2 O) HELIX 1 1 ASN A 101 VAL A 118 1 18 HELIX 2 2 LEU A 153 ILE A 157 1 5 HELIX 3 3 ASP A 162 ALA A 183 1 22 HELIX 4 4 LYS A 191 SER A 193 5 3 HELIX 5 5 ALA A 231 LEU A 236 1 6 HELIX 6 6 ASN A 243 HIS A 259 1 17 HELIX 7 7 ILE A 269 GLY A 280 1 12 HELIX 8 8 CYS A 283 LYS A 288 1 6 HELIX 9 9 GLN A 291 GLU A 299 1 9 HELIX 10 10 THR A 308 PHE A 313 1 6 HELIX 11 11 PRO A 314 PHE A 318 5 5 HELIX 12 12 SER A 322 LEU A 340 1 19 HELIX 13 13 ASP A 343 ARG A 347 5 5 HELIX 14 14 SER A 349 GLN A 355 1 7 HELIX 15 15 ILE A 359 TYR A 363 5 5 HELIX 16 16 THR A 386 ASN A 400 1 15 SHEET 1 A 2 PHE A 48 VAL A 53 0 SHEET 2 A 2 SER A 56 LEU A 61 -1 O SER A 56 N VAL A 53 SHEET 1 B 5 TYR A 64 GLY A 73 0 SHEET 2 B 5 GLY A 76 ASP A 83 -1 O ALA A 80 N LYS A 68 SHEET 3 B 5 ARG A 88 LEU A 95 -1 O VAL A 90 N ALA A 81 SHEET 4 B 5 VAL A 142 GLU A 147 -1 O MET A 146 N ALA A 91 SHEET 5 B 5 LEU A 126 PHE A 130 -1 N LEU A 127 O VAL A 145 SHEET 1 C 3 ALA A 151 ASN A 152 0 SHEET 2 C 3 ILE A 195 VAL A 197 -1 O VAL A 197 N ALA A 151 SHEET 3 C 3 LEU A 203 ILE A 205 -1 O LYS A 204 N VAL A 196 LINK C LYS A 116 N OCY A 117 1555 1555 1.33 LINK C OCY A 117 N VAL A 118 1555 1555 1.33 LINK C LEU A 153 N OCY A 154 1555 1555 1.33 LINK C OCY A 154 N GLN A 155 1555 1555 1.33 LINK C ASP A 200 N OCY A 201 1555 1555 1.32 LINK C OCY A 201 N THR A 202 1555 1555 1.37 SITE 1 AC1 13 ILE A 70 GLY A 71 VAL A 78 MET A 146 SITE 2 AC1 13 LEU A 148 MET A 149 ASP A 150 ALA A 151 SITE 3 AC1 13 ASN A 152 GLN A 155 SER A 193 ASN A 194 SITE 4 AC1 13 LEU A 206 SITE 1 AC2 5 LEU A 279 LEU A 307 THR A 308 PHE A 309 SITE 2 AC2 5 EDO A 502 SITE 1 AC3 4 ALA A 305 GLY A 306 THR A 308 EDO A 501 SITE 1 AC4 3 ARG A 258 LYS A 311 LEU A 312 SITE 1 AC5 5 ASP A 334 LYS A 338 ASP A 352 HIS A 356 SITE 2 AC5 5 HOH A 758 SITE 1 AC6 1 GLN A 291 CRYST1 81.565 125.315 69.253 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014440 0.00000