HEADER HYDROLASE 16-JAN-09 3FVQ TITLE CRYSTAL STRUCTURE OF THE NUCLEOTIDE BINDING DOMAIN FBPC COMPLEXED WITH TITLE 2 ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FE(3+) IONS IMPORT ATP-BINDING PROTEIN FBPC; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.3.30; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 242231; SOURCE 4 GENE: FBPC, NGO0215; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS NUCLEOTIDE BINDING DOMAIN, ABC MOTOR DOMAIN, FERRIC IRON TRANSPORT, KEYWDS 2 ATP-BINDING, CELL INNER MEMBRANE, CELL MEMBRANE, HYDROLASE, ION KEYWDS 3 TRANSPORT, IRON, IRON TRANSPORT, MEMBRANE, NUCLEOTIDE-BINDING, KEYWDS 4 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.NEWSTEAD,P.BILTON,E.P.CARPENTER,D.CAMPOPIANO,S.IWATA REVDAT 3 21-FEB-24 3FVQ 1 REMARK SEQADV LINK REVDAT 2 17-OCT-12 3FVQ 1 JRNL VERSN REVDAT 1 25-AUG-09 3FVQ 0 JRNL AUTH S.NEWSTEAD,P.W.FOWLER,P.BILTON,E.P.CARPENTER,P.J.SADLER, JRNL AUTH 2 D.J.CAMPOPIANO,M.S.SANSOM,S.IWATA JRNL TITL INSIGHTS INTO HOW NUCLEOTIDE-BINDING DOMAINS POWER ABC JRNL TITL 2 TRANSPORT. JRNL REF STRUCTURE V. 17 1213 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19748342 JRNL DOI 10.1016/J.STR.2009.07.009 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 49321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2624 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3751 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5249 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 522 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.872 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5572 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7612 ; 1.666 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 736 ; 6.328 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;34.603 ;23.169 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 928 ;16.030 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 53 ;23.227 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 876 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4237 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2585 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3696 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 495 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 10 ; 0.087 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3511 ; 0.914 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5649 ; 1.576 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2061 ; 2.645 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1940 ; 4.248 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 190 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51975 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 76.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: N? REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 0.1M MES, 0.2M CACL2, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.93050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.50700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.54750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.50700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.93050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.54750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 325 REMARK 465 SER A 326 REMARK 465 ALA A 327 REMARK 465 PRO A 328 REMARK 465 THR A 329 REMARK 465 ASN A 350 REMARK 465 THR A 351 REMARK 465 LEU A 352 REMARK 465 GLU A 353 REMARK 465 HIS A 354 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 MET B 1 REMARK 465 LEU B 352 REMARK 465 GLU B 353 REMARK 465 HIS B 354 REMARK 465 HIS B 355 REMARK 465 HIS B 356 REMARK 465 HIS B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 N CB OG1 CG2 REMARK 470 THR B 2 N CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 232 O HOH B 543 2.17 REMARK 500 OE2 GLU B 124 O HOH B 566 2.19 REMARK 500 O GLN A 87 O HOH A 565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 15 -128.33 42.33 REMARK 500 VAL A 19 -31.86 -135.56 REMARK 500 LEU A 25 136.92 -171.40 REMARK 500 SER A 64 41.78 38.94 REMARK 500 ASN A 74 76.91 -164.74 REMARK 500 VAL A 90 81.16 34.50 REMARK 500 ALA A 268 174.56 -45.29 REMARK 500 ALA A 270 141.94 -37.44 REMARK 500 GLN A 317 56.34 -116.91 REMARK 500 GLN B 15 -119.32 51.25 REMARK 500 VAL B 19 -42.42 -137.18 REMARK 500 VAL B 19 -36.78 -140.12 REMARK 500 SER B 64 54.20 33.46 REMARK 500 SER B 70 -176.76 179.13 REMARK 500 ASN B 74 84.92 -164.28 REMARK 500 SER B 266 146.40 -171.57 REMARK 500 LYS B 305 -163.98 -120.57 REMARK 500 SER B 331 -19.73 -44.97 REMARK 500 ASN B 350 69.51 -48.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 360 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 44 OG1 REMARK 620 2 GLN A 87 OE1 96.2 REMARK 620 3 HOH A 367 O 88.1 91.5 REMARK 620 4 HOH A 385 O 86.1 85.0 173.0 REMARK 620 5 ATP A 401 O1G 164.2 97.3 99.7 86.8 REMARK 620 6 ATP A 401 O2B 81.1 171.9 96.0 87.1 84.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 361 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 44 OG1 REMARK 620 2 GLN B 87 OE1 97.5 REMARK 620 3 ATP B 360 O1G 166.8 93.8 REMARK 620 4 ATP B 360 O2B 82.2 174.1 85.9 REMARK 620 5 HOH B 372 O 88.1 85.3 99.6 100.6 REMARK 620 6 HOH B 408 O 85.6 82.9 89.1 91.1 165.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 361 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THESE SEQUENCE CONFLICTS ARE DUE TO THIS GENE REMARK 999 HAVING BEEN ISOLATED FROM A CLINICAL ISOLATE OF N. GONORRHEA RATHER REMARK 999 THAN THE ONE USED FOR THE SEQUENCING PROJECT. THESE MUTATIONS WERE REMARK 999 PRESENT IN THE CLINICAL ISOLATE BUT ARE NOT IN ANY FUNCTIONALLY REMARK 999 SIGNIFICANT AREAS OF THE PROTEIN. DBREF 3FVQ A 1 352 UNP Q5FA19 FBPC_NEIG1 1 352 DBREF 3FVQ B 1 352 UNP Q5FA19 FBPC_NEIG1 1 352 SEQADV 3FVQ ALA A 147 UNP Q5FA19 VAL 147 SEE REMARK 999 SEQADV 3FVQ TYR A 283 UNP Q5FA19 PHE 283 SEE REMARK 999 SEQADV 3FVQ GLU A 353 UNP Q5FA19 EXPRESSION TAG SEQADV 3FVQ HIS A 354 UNP Q5FA19 EXPRESSION TAG SEQADV 3FVQ HIS A 355 UNP Q5FA19 EXPRESSION TAG SEQADV 3FVQ HIS A 356 UNP Q5FA19 EXPRESSION TAG SEQADV 3FVQ HIS A 357 UNP Q5FA19 EXPRESSION TAG SEQADV 3FVQ HIS A 358 UNP Q5FA19 EXPRESSION TAG SEQADV 3FVQ HIS A 359 UNP Q5FA19 EXPRESSION TAG SEQADV 3FVQ ALA B 147 UNP Q5FA19 VAL 147 SEE REMARK 999 SEQADV 3FVQ TYR B 283 UNP Q5FA19 PHE 283 SEE REMARK 999 SEQADV 3FVQ GLU B 353 UNP Q5FA19 EXPRESSION TAG SEQADV 3FVQ HIS B 354 UNP Q5FA19 EXPRESSION TAG SEQADV 3FVQ HIS B 355 UNP Q5FA19 EXPRESSION TAG SEQADV 3FVQ HIS B 356 UNP Q5FA19 EXPRESSION TAG SEQADV 3FVQ HIS B 357 UNP Q5FA19 EXPRESSION TAG SEQADV 3FVQ HIS B 358 UNP Q5FA19 EXPRESSION TAG SEQADV 3FVQ HIS B 359 UNP Q5FA19 EXPRESSION TAG SEQRES 1 A 359 MET THR ALA ALA LEU HIS ILE GLY HIS LEU SER LYS SER SEQRES 2 A 359 PHE GLN ASN THR PRO VAL LEU ASN ASP ILE SER LEU SER SEQRES 3 A 359 LEU ASP PRO GLY GLU ILE LEU PHE ILE ILE GLY ALA SER SEQRES 4 A 359 GLY CYS GLY LYS THR THR LEU LEU ARG CYS LEU ALA GLY SEQRES 5 A 359 PHE GLU GLN PRO ASP SER GLY GLU ILE SER LEU SER GLY SEQRES 6 A 359 LYS THR ILE PHE SER LYS ASN THR ASN LEU PRO VAL ARG SEQRES 7 A 359 GLU ARG ARG LEU GLY TYR LEU VAL GLN GLU GLY VAL LEU SEQRES 8 A 359 PHE PRO HIS LEU THR VAL TYR ARG ASN ILE ALA TYR GLY SEQRES 9 A 359 LEU GLY ASN GLY LYS GLY ARG THR ALA GLN GLU ARG GLN SEQRES 10 A 359 ARG ILE GLU ALA MET LEU GLU LEU THR GLY ILE SER GLU SEQRES 11 A 359 LEU ALA GLY ARG TYR PRO HIS GLU LEU SER GLY GLY GLN SEQRES 12 A 359 GLN GLN ARG ALA ALA LEU ALA ARG ALA LEU ALA PRO ASP SEQRES 13 A 359 PRO GLU LEU ILE LEU LEU ASP GLU PRO PHE SER ALA LEU SEQRES 14 A 359 ASP GLU GLN LEU ARG ARG GLN ILE ARG GLU ASP MET ILE SEQRES 15 A 359 ALA ALA LEU ARG ALA ASN GLY LYS SER ALA VAL PHE VAL SEQRES 16 A 359 SER HIS ASP ARG GLU GLU ALA LEU GLN TYR ALA ASP ARG SEQRES 17 A 359 ILE ALA VAL MET LYS GLN GLY ARG ILE LEU GLN THR ALA SEQRES 18 A 359 SER PRO HIS GLU LEU TYR ARG GLN PRO ALA ASP LEU ASP SEQRES 19 A 359 ALA ALA LEU PHE ILE GLY GLU GLY ILE VAL PHE PRO ALA SEQRES 20 A 359 ALA LEU ASN ALA ASP GLY THR ALA ASP CYS ARG LEU GLY SEQRES 21 A 359 ARG LEU PRO VAL GLN SER GLY ALA PRO ALA GLY THR ARG SEQRES 22 A 359 GLY THR LEU LEU ILE ARG PRO GLU GLN TYR SER LEU HIS SEQRES 23 A 359 PRO HIS SER ALA PRO ALA ALA SER ILE HIS ALA VAL VAL SEQRES 24 A 359 LEU LYS THR THR PRO LYS ALA ARG HIS THR GLU ILE SER SEQRES 25 A 359 LEU ARG ALA GLY GLN THR VAL LEU THR LEU ASN LEU PRO SEQRES 26 A 359 SER ALA PRO THR LEU SER ASP GLY ILE SER ALA VAL LEU SEQRES 27 A 359 HIS LEU ASP GLY PRO ALA LEU PHE PHE PRO GLY ASN THR SEQRES 28 A 359 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 359 MET THR ALA ALA LEU HIS ILE GLY HIS LEU SER LYS SER SEQRES 2 B 359 PHE GLN ASN THR PRO VAL LEU ASN ASP ILE SER LEU SER SEQRES 3 B 359 LEU ASP PRO GLY GLU ILE LEU PHE ILE ILE GLY ALA SER SEQRES 4 B 359 GLY CYS GLY LYS THR THR LEU LEU ARG CYS LEU ALA GLY SEQRES 5 B 359 PHE GLU GLN PRO ASP SER GLY GLU ILE SER LEU SER GLY SEQRES 6 B 359 LYS THR ILE PHE SER LYS ASN THR ASN LEU PRO VAL ARG SEQRES 7 B 359 GLU ARG ARG LEU GLY TYR LEU VAL GLN GLU GLY VAL LEU SEQRES 8 B 359 PHE PRO HIS LEU THR VAL TYR ARG ASN ILE ALA TYR GLY SEQRES 9 B 359 LEU GLY ASN GLY LYS GLY ARG THR ALA GLN GLU ARG GLN SEQRES 10 B 359 ARG ILE GLU ALA MET LEU GLU LEU THR GLY ILE SER GLU SEQRES 11 B 359 LEU ALA GLY ARG TYR PRO HIS GLU LEU SER GLY GLY GLN SEQRES 12 B 359 GLN GLN ARG ALA ALA LEU ALA ARG ALA LEU ALA PRO ASP SEQRES 13 B 359 PRO GLU LEU ILE LEU LEU ASP GLU PRO PHE SER ALA LEU SEQRES 14 B 359 ASP GLU GLN LEU ARG ARG GLN ILE ARG GLU ASP MET ILE SEQRES 15 B 359 ALA ALA LEU ARG ALA ASN GLY LYS SER ALA VAL PHE VAL SEQRES 16 B 359 SER HIS ASP ARG GLU GLU ALA LEU GLN TYR ALA ASP ARG SEQRES 17 B 359 ILE ALA VAL MET LYS GLN GLY ARG ILE LEU GLN THR ALA SEQRES 18 B 359 SER PRO HIS GLU LEU TYR ARG GLN PRO ALA ASP LEU ASP SEQRES 19 B 359 ALA ALA LEU PHE ILE GLY GLU GLY ILE VAL PHE PRO ALA SEQRES 20 B 359 ALA LEU ASN ALA ASP GLY THR ALA ASP CYS ARG LEU GLY SEQRES 21 B 359 ARG LEU PRO VAL GLN SER GLY ALA PRO ALA GLY THR ARG SEQRES 22 B 359 GLY THR LEU LEU ILE ARG PRO GLU GLN TYR SER LEU HIS SEQRES 23 B 359 PRO HIS SER ALA PRO ALA ALA SER ILE HIS ALA VAL VAL SEQRES 24 B 359 LEU LYS THR THR PRO LYS ALA ARG HIS THR GLU ILE SER SEQRES 25 B 359 LEU ARG ALA GLY GLN THR VAL LEU THR LEU ASN LEU PRO SEQRES 26 B 359 SER ALA PRO THR LEU SER ASP GLY ILE SER ALA VAL LEU SEQRES 27 B 359 HIS LEU ASP GLY PRO ALA LEU PHE PHE PRO GLY ASN THR SEQRES 28 B 359 LEU GLU HIS HIS HIS HIS HIS HIS HET ATP A 401 31 HET CA A 360 1 HET CA A 361 1 HET ATP B 360 31 HET CA B 361 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 CA 3(CA 2+) FORMUL 8 HOH *522(H2 O) HELIX 1 1 GLY A 42 ALA A 51 1 10 HELIX 2 2 PRO A 76 ARG A 80 5 5 HELIX 3 3 THR A 96 TYR A 103 1 8 HELIX 4 4 THR A 112 THR A 126 1 15 HELIX 5 5 ILE A 128 ALA A 132 5 5 HELIX 6 6 TYR A 135 LEU A 139 5 5 HELIX 7 7 SER A 140 ALA A 154 1 15 HELIX 8 8 ASP A 170 ASN A 188 1 19 HELIX 9 9 ASP A 198 ALA A 206 1 9 HELIX 10 10 SER A 222 GLN A 229 1 8 HELIX 11 11 ASP A 232 GLY A 240 1 9 HELIX 12 12 ARG A 279 GLU A 281 5 3 HELIX 13 13 GLY B 42 ALA B 51 1 10 HELIX 14 14 PRO B 76 ARG B 80 5 5 HELIX 15 15 THR B 96 TYR B 103 1 8 HELIX 16 16 THR B 112 GLY B 127 1 16 HELIX 17 17 ILE B 128 ALA B 132 5 5 HELIX 18 18 TYR B 135 LEU B 139 5 5 HELIX 19 19 SER B 140 ALA B 154 1 15 HELIX 20 20 ASP B 170 ASN B 188 1 19 HELIX 21 21 ASP B 198 ALA B 206 1 9 HELIX 22 22 SER B 222 GLN B 229 1 8 HELIX 23 23 ASP B 232 GLY B 240 1 9 HELIX 24 24 ARG B 279 GLU B 281 5 3 SHEET 1 A 4 THR A 17 LEU A 27 0 SHEET 2 A 4 LEU A 5 PHE A 14 -1 N PHE A 14 O THR A 17 SHEET 3 A 4 SER A 58 LEU A 63 -1 O SER A 62 N HIS A 6 SHEET 4 A 4 LYS A 66 PHE A 69 -1 O ILE A 68 N ILE A 61 SHEET 1 B 6 GLY A 83 LEU A 85 0 SHEET 2 B 6 LEU A 159 ASP A 163 1 O LEU A 161 N LEU A 85 SHEET 3 B 6 SER A 191 VAL A 195 1 O VAL A 193 N LEU A 162 SHEET 4 B 6 ILE A 32 GLY A 37 1 N LEU A 33 O PHE A 194 SHEET 5 B 6 ARG A 208 LYS A 213 1 O MET A 212 N ILE A 36 SHEET 6 B 6 ARG A 216 ALA A 221 -1 O LEU A 218 N VAL A 211 SHEET 1 C 6 ILE A 243 LEU A 249 0 SHEET 2 C 6 THR A 254 CYS A 257 -1 O ASP A 256 N ALA A 248 SHEET 3 C 6 GLY A 260 GLN A 265 -1 O LEU A 262 N ALA A 255 SHEET 4 C 6 ALA B 344 PHE B 347 1 O ALA B 344 N PRO A 263 SHEET 5 C 6 ARG A 273 ILE A 278 -1 N THR A 275 O PHE B 347 SHEET 6 C 6 ILE A 243 LEU A 249 -1 N ILE A 243 O ILE A 278 SHEET 1 D 5 TYR A 283 HIS A 286 0 SHEET 2 D 5 SER B 335 LEU B 340 -1 O VAL B 337 N HIS A 286 SHEET 3 D 5 ALA B 293 PRO B 304 -1 N ILE B 295 O LEU B 338 SHEET 4 D 5 THR B 309 ALA B 315 -1 O SER B 312 N LYS B 301 SHEET 5 D 5 THR B 318 LEU B 324 -1 O LEU B 322 N ILE B 311 SHEET 1 E 5 THR A 318 LEU A 324 0 SHEET 2 E 5 THR A 309 ALA A 315 -1 N ILE A 311 O LEU A 322 SHEET 3 E 5 ALA A 293 PRO A 304 -1 N THR A 303 O GLU A 310 SHEET 4 E 5 SER A 335 LEU A 340 -1 O ALA A 336 N ALA A 297 SHEET 5 E 5 TYR B 283 HIS B 286 -1 O SER B 284 N HIS A 339 SHEET 1 F 6 ALA A 344 PRO A 348 0 SHEET 2 F 6 GLY B 260 GLN B 265 1 O PRO B 263 N ALA A 344 SHEET 3 F 6 THR B 254 CYS B 257 -1 N ALA B 255 O LEU B 262 SHEET 4 F 6 ILE B 243 LEU B 249 -1 N ALA B 248 O ASP B 256 SHEET 5 F 6 ARG B 273 ILE B 278 -1 O LEU B 276 N PHE B 245 SHEET 6 F 6 ALA A 344 PRO A 348 -1 N LEU A 345 O LEU B 277 SHEET 1 G 5 THR B 17 LEU B 27 0 SHEET 2 G 5 LEU B 5 PHE B 14 -1 N PHE B 14 O THR B 17 SHEET 3 G 5 SER B 58 LEU B 63 -1 O SER B 62 N HIS B 6 SHEET 4 G 5 LYS B 66 SER B 70 -1 O ILE B 68 N ILE B 61 SHEET 5 G 5 THR B 73 ASN B 74 -1 O THR B 73 N SER B 70 SHEET 1 H 6 GLY B 83 LEU B 85 0 SHEET 2 H 6 LEU B 159 ASP B 163 1 O LEU B 161 N LEU B 85 SHEET 3 H 6 SER B 191 VAL B 195 1 O VAL B 193 N LEU B 162 SHEET 4 H 6 ILE B 32 GLY B 37 1 N LEU B 33 O PHE B 194 SHEET 5 H 6 ARG B 208 LYS B 213 1 O ALA B 210 N PHE B 34 SHEET 6 H 6 ARG B 216 ALA B 221 -1 O ALA B 221 N ILE B 209 LINK OG1 THR A 44 CA CA A 360 1555 1555 2.33 LINK OE1 GLN A 87 CA CA A 360 1555 1555 2.38 LINK CA CA A 360 O HOH A 367 1555 1555 2.31 LINK CA CA A 360 O HOH A 385 1555 1555 2.50 LINK CA CA A 360 O1G ATP A 401 1555 1555 2.26 LINK CA CA A 360 O2B ATP A 401 1555 1555 2.35 LINK OG1 THR B 44 CA CA B 361 1555 1555 2.33 LINK OE1 GLN B 87 CA CA B 361 1555 1555 2.38 LINK O1G ATP B 360 CA CA B 361 1555 1555 2.32 LINK O2B ATP B 360 CA CA B 361 1555 1555 2.34 LINK CA CA B 361 O HOH B 372 1555 1555 2.37 LINK CA CA B 361 O HOH B 408 1555 1555 2.45 CISPEP 1 HIS A 286 PRO A 287 0 3.50 CISPEP 2 HIS B 286 PRO B 287 0 2.83 SITE 1 AC1 24 PHE A 14 THR A 17 VAL A 19 SER A 39 SITE 2 AC1 24 GLY A 40 CYS A 41 GLY A 42 LYS A 43 SITE 3 AC1 24 THR A 44 THR A 45 GLN A 87 CA A 360 SITE 4 AC1 24 HOH A 368 HOH A 385 HOH A 391 HOH A 399 SITE 5 AC1 24 HOH A 428 ARG B 134 GLU B 138 SER B 140 SITE 6 AC1 24 GLY B 141 GLY B 142 GLN B 143 HOH B 416 SITE 1 AC2 5 THR A 44 GLN A 87 HOH A 367 HOH A 385 SITE 2 AC2 5 ATP A 401 SITE 1 AC3 1 HIS B 288 SITE 1 AC4 27 ARG A 134 GLU A 138 SER A 140 GLY A 141 SITE 2 AC4 27 GLY A 142 GLN A 143 HOH A 421 PHE B 14 SITE 3 AC4 27 GLN B 15 THR B 17 VAL B 19 SER B 39 SITE 4 AC4 27 GLY B 40 CYS B 41 GLY B 42 LYS B 43 SITE 5 AC4 27 THR B 44 THR B 45 GLN B 87 CA B 361 SITE 6 AC4 27 HOH B 408 HOH B 415 HOH B 475 HOH B 487 SITE 7 AC4 27 HOH B 551 HOH B 583 HOH B 640 SITE 1 AC5 5 THR B 44 GLN B 87 ATP B 360 HOH B 372 SITE 2 AC5 5 HOH B 408 CRYST1 55.861 89.095 149.014 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017902 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011224 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006711 0.00000