HEADER OXIDOREDUCTASE 16-JAN-09 3FW2 TITLE C-TERMINAL DOMAIN OF PUTATIVE THIOL-DISULFIDE OXIDOREDUCTASE FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON. COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL-DISULFIDE OXIDOREDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: BT_2845; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS STRUCTURAL GENOMICS, APC61456.1, THIOL-DISULFIDE OXIDOREDUCTASE, KEYWDS 2 TLPA-LIKE FAMILY, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,H.LI,G.COBB,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 01-NOV-17 3FW2 1 REMARK REVDAT 2 13-JUL-11 3FW2 1 VERSN REVDAT 1 27-JAN-09 3FW2 0 JRNL AUTH J.OSIPIUK,H.LI,G.COBB,A.JOACHIMIAK JRNL TITL X-RAY CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF PUTATIVE JRNL TITL 2 THIOL-DISULFIDE OXIDOREDUCTASE FROM BACTEROIDES JRNL TITL 3 THETAIOTAOMICRON. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 73989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3734 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4806 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 288 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 733 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : 0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.360 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5324 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3890 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7217 ; 1.633 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9624 ; 0.934 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 710 ; 5.655 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 257 ;38.714 ;25.759 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1137 ;15.020 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.589 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 761 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5930 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1018 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3153 ; 0.991 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1267 ; 0.317 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5122 ; 1.755 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2171 ; 2.840 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2032 ; 4.664 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3316 83.1124 20.3653 REMARK 3 T TENSOR REMARK 3 T11: 0.0202 T22: 0.0300 REMARK 3 T33: 0.0290 T12: -0.0029 REMARK 3 T13: -0.0198 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.3293 L22: 1.0966 REMARK 3 L33: 0.8379 L12: -0.2609 REMARK 3 L13: 0.0806 L23: 0.1752 REMARK 3 S TENSOR REMARK 3 S11: 0.0754 S12: 0.0641 S13: -0.0502 REMARK 3 S21: -0.0893 S22: -0.0187 S23: 0.0634 REMARK 3 S31: 0.0693 S32: -0.0191 S33: -0.0567 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 213 B 360 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3037 99.8914 47.0230 REMARK 3 T TENSOR REMARK 3 T11: 0.0339 T22: 0.0187 REMARK 3 T33: 0.0114 T12: 0.0069 REMARK 3 T13: 0.0089 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.6283 L22: 2.1466 REMARK 3 L33: 1.5030 L12: -0.1038 REMARK 3 L13: -0.0420 L23: 0.3339 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: -0.0517 S13: 0.0165 REMARK 3 S21: 0.2116 S22: 0.0074 S23: 0.0605 REMARK 3 S31: -0.0008 S32: -0.0384 S33: -0.0185 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 213 C 360 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3259 129.4659 28.3061 REMARK 3 T TENSOR REMARK 3 T11: 0.0038 T22: 0.0246 REMARK 3 T33: 0.0339 T12: 0.0006 REMARK 3 T13: 0.0013 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.4810 L22: 1.3402 REMARK 3 L33: 1.0260 L12: -0.1415 REMARK 3 L13: 0.0450 L23: 0.4673 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0018 S13: 0.1095 REMARK 3 S21: -0.0529 S22: 0.0185 S23: 0.0660 REMARK 3 S31: -0.0543 S32: -0.0365 S33: -0.0226 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 213 D 360 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4267 112.5635 8.3725 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: 0.0255 REMARK 3 T33: 0.0150 T12: -0.0277 REMARK 3 T13: 0.0246 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.1181 L22: 2.3200 REMARK 3 L33: 1.2100 L12: 0.5433 REMARK 3 L13: 0.1033 L23: 0.5833 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: 0.0428 S13: -0.0482 REMARK 3 S21: -0.1971 S22: 0.0775 S23: -0.1600 REMARK 3 S31: -0.0122 S32: 0.0524 S33: -0.0378 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3FW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051113. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74076 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 36.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.5170 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.74100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, SOLVE, RESOLVE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M TRIS REMARK 280 BUFFER, 25% PEG-3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.72050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.24450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.35200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.24450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.72050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.35200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PUTATIVE BIOLOGICAL UNIT IS A DIMER (CHAINS A AND B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 211 REMARK 465 ASN A 212 REMARK 465 SER B 211 REMARK 465 ASN B 212 REMARK 465 SER C 211 REMARK 465 ASN C 212 REMARK 465 SER D 211 REMARK 465 ASN D 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 306 O HOH B 371 2.05 REMARK 500 O SER C 215 NZ LYS C 342 2.13 REMARK 500 OG SER B 334 OD1 ASP B 336 2.16 REMARK 500 O HOH C 422 O HOH C 560 2.17 REMARK 500 OG SER A 334 OD1 ASP A 336 2.17 REMARK 500 O HOH B 390 O HOH B 496 2.18 REMARK 500 NZ LYS D 214 OE1 GLN D 321 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 268 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP C 296 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG D 236 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG D 268 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG D 268 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 256 42.77 -84.55 REMARK 500 ASN C 255 70.82 -102.55 REMARK 500 ASP C 256 59.20 -99.75 REMARK 500 ASP C 256 48.20 -91.36 REMARK 500 ASP D 256 59.88 -91.06 REMARK 500 CYS D 309 125.53 -172.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KFK RELATED DB: PDB REMARK 900 POSSIBLE THIOL-DISULFIDE OXIDOREDUCTASE FROM BACTEROIDES FRAGILIS. REMARK 900 RELATED ID: APC61456.1 RELATED DB: TARGETDB DBREF 3FW2 A 214 360 UNP Q8A3V9 Q8A3V9_BACTN 214 360 DBREF 3FW2 B 214 360 UNP Q8A3V9 Q8A3V9_BACTN 214 360 DBREF 3FW2 C 214 360 UNP Q8A3V9 Q8A3V9_BACTN 214 360 DBREF 3FW2 D 214 360 UNP Q8A3V9 Q8A3V9_BACTN 214 360 SEQADV 3FW2 SER A 211 UNP Q8A3V9 EXPRESSION TAG SEQADV 3FW2 ASN A 212 UNP Q8A3V9 EXPRESSION TAG SEQADV 3FW2 ALA A 213 UNP Q8A3V9 EXPRESSION TAG SEQADV 3FW2 SER B 211 UNP Q8A3V9 EXPRESSION TAG SEQADV 3FW2 ASN B 212 UNP Q8A3V9 EXPRESSION TAG SEQADV 3FW2 ALA B 213 UNP Q8A3V9 EXPRESSION TAG SEQADV 3FW2 SER C 211 UNP Q8A3V9 EXPRESSION TAG SEQADV 3FW2 ASN C 212 UNP Q8A3V9 EXPRESSION TAG SEQADV 3FW2 ALA C 213 UNP Q8A3V9 EXPRESSION TAG SEQADV 3FW2 SER D 211 UNP Q8A3V9 EXPRESSION TAG SEQADV 3FW2 ASN D 212 UNP Q8A3V9 EXPRESSION TAG SEQADV 3FW2 ALA D 213 UNP Q8A3V9 EXPRESSION TAG SEQRES 1 A 150 SER ASN ALA LYS SER GLU ILE GLY LYS TYR ALA PRO PHE SEQRES 2 A 150 PHE SER LEU PRO ASN ALA LYS GLY GLU LYS ILE THR ARG SEQRES 3 A 150 SER SER ASP ALA PHE LYS GLN LYS SER LEU LEU ILE ASN SEQRES 4 A 150 PHE TRP ALA SER TRP ASN ASP SER ILE SER GLN LYS GLN SEQRES 5 A 150 SER ASN SER GLU LEU ARG GLU ILE TYR LYS LYS TYR LYS SEQRES 6 A 150 LYS ASN LYS TYR ILE GLY MSE LEU GLY ILE SER LEU ASP SEQRES 7 A 150 VAL ASP LYS GLN GLN TRP LYS ASP ALA ILE LYS ARG ASP SEQRES 8 A 150 THR LEU ASP TRP GLU GLN VAL CYS ASP PHE GLY GLY LEU SEQRES 9 A 150 ASN SER GLU VAL ALA LYS GLN TYR SER ILE TYR LYS ILE SEQRES 10 A 150 PRO ALA ASN ILE LEU LEU SER SER ASP GLY LYS ILE LEU SEQRES 11 A 150 ALA LYS ASN LEU ARG GLY GLU GLU LEU LYS LYS LYS ILE SEQRES 12 A 150 GLU ASN ILE VAL GLU GLU ALA SEQRES 1 B 150 SER ASN ALA LYS SER GLU ILE GLY LYS TYR ALA PRO PHE SEQRES 2 B 150 PHE SER LEU PRO ASN ALA LYS GLY GLU LYS ILE THR ARG SEQRES 3 B 150 SER SER ASP ALA PHE LYS GLN LYS SER LEU LEU ILE ASN SEQRES 4 B 150 PHE TRP ALA SER TRP ASN ASP SER ILE SER GLN LYS GLN SEQRES 5 B 150 SER ASN SER GLU LEU ARG GLU ILE TYR LYS LYS TYR LYS SEQRES 6 B 150 LYS ASN LYS TYR ILE GLY MSE LEU GLY ILE SER LEU ASP SEQRES 7 B 150 VAL ASP LYS GLN GLN TRP LYS ASP ALA ILE LYS ARG ASP SEQRES 8 B 150 THR LEU ASP TRP GLU GLN VAL CYS ASP PHE GLY GLY LEU SEQRES 9 B 150 ASN SER GLU VAL ALA LYS GLN TYR SER ILE TYR LYS ILE SEQRES 10 B 150 PRO ALA ASN ILE LEU LEU SER SER ASP GLY LYS ILE LEU SEQRES 11 B 150 ALA LYS ASN LEU ARG GLY GLU GLU LEU LYS LYS LYS ILE SEQRES 12 B 150 GLU ASN ILE VAL GLU GLU ALA SEQRES 1 C 150 SER ASN ALA LYS SER GLU ILE GLY LYS TYR ALA PRO PHE SEQRES 2 C 150 PHE SER LEU PRO ASN ALA LYS GLY GLU LYS ILE THR ARG SEQRES 3 C 150 SER SER ASP ALA PHE LYS GLN LYS SER LEU LEU ILE ASN SEQRES 4 C 150 PHE TRP ALA SER TRP ASN ASP SER ILE SER GLN LYS GLN SEQRES 5 C 150 SER ASN SER GLU LEU ARG GLU ILE TYR LYS LYS TYR LYS SEQRES 6 C 150 LYS ASN LYS TYR ILE GLY MSE LEU GLY ILE SER LEU ASP SEQRES 7 C 150 VAL ASP LYS GLN GLN TRP LYS ASP ALA ILE LYS ARG ASP SEQRES 8 C 150 THR LEU ASP TRP GLU GLN VAL CYS ASP PHE GLY GLY LEU SEQRES 9 C 150 ASN SER GLU VAL ALA LYS GLN TYR SER ILE TYR LYS ILE SEQRES 10 C 150 PRO ALA ASN ILE LEU LEU SER SER ASP GLY LYS ILE LEU SEQRES 11 C 150 ALA LYS ASN LEU ARG GLY GLU GLU LEU LYS LYS LYS ILE SEQRES 12 C 150 GLU ASN ILE VAL GLU GLU ALA SEQRES 1 D 150 SER ASN ALA LYS SER GLU ILE GLY LYS TYR ALA PRO PHE SEQRES 2 D 150 PHE SER LEU PRO ASN ALA LYS GLY GLU LYS ILE THR ARG SEQRES 3 D 150 SER SER ASP ALA PHE LYS GLN LYS SER LEU LEU ILE ASN SEQRES 4 D 150 PHE TRP ALA SER TRP ASN ASP SER ILE SER GLN LYS GLN SEQRES 5 D 150 SER ASN SER GLU LEU ARG GLU ILE TYR LYS LYS TYR LYS SEQRES 6 D 150 LYS ASN LYS TYR ILE GLY MSE LEU GLY ILE SER LEU ASP SEQRES 7 D 150 VAL ASP LYS GLN GLN TRP LYS ASP ALA ILE LYS ARG ASP SEQRES 8 D 150 THR LEU ASP TRP GLU GLN VAL CYS ASP PHE GLY GLY LEU SEQRES 9 D 150 ASN SER GLU VAL ALA LYS GLN TYR SER ILE TYR LYS ILE SEQRES 10 D 150 PRO ALA ASN ILE LEU LEU SER SER ASP GLY LYS ILE LEU SEQRES 11 D 150 ALA LYS ASN LEU ARG GLY GLU GLU LEU LYS LYS LYS ILE SEQRES 12 D 150 GLU ASN ILE VAL GLU GLU ALA MODRES 3FW2 MSE A 282 MET SELENOMETHIONINE MODRES 3FW2 MSE B 282 MET SELENOMETHIONINE MODRES 3FW2 MSE C 282 MET SELENOMETHIONINE MODRES 3FW2 MSE D 282 MET SELENOMETHIONINE HET MSE A 282 8 HET MSE B 282 8 HET MSE C 282 8 HET MSE D 282 8 HET ACT A 502 4 HET ACT A 503 4 HET ACT B 501 4 HET EDO C 506 4 HET ACT D 505 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 8 EDO C2 H6 O2 FORMUL 10 HOH *733(H2 O) HELIX 1 1 SER A 257 LYS A 275 1 19 HELIX 2 2 ASP A 290 ASP A 301 1 12 HELIX 3 3 GLY A 312 ASN A 315 5 4 HELIX 4 4 SER A 316 TYR A 322 1 7 HELIX 5 5 ARG A 345 ALA A 360 1 16 HELIX 6 6 SER B 257 LYS B 275 1 19 HELIX 7 7 ASP B 290 ASP B 301 1 12 HELIX 8 8 SER B 316 TYR B 322 1 7 HELIX 9 9 ARG B 345 GLU B 358 1 14 HELIX 10 10 SER C 257 LYS C 275 1 19 HELIX 11 11 ASP C 290 ASP C 301 1 12 HELIX 12 12 SER C 316 TYR C 322 1 7 HELIX 13 13 ARG C 345 ALA C 360 1 16 HELIX 14 14 SER D 257 LYS D 275 1 19 HELIX 15 15 ASP D 290 ASP D 301 1 12 HELIX 16 16 SER D 316 TYR D 322 1 7 HELIX 17 17 ARG D 345 ALA D 360 1 16 SHEET 1 A 2 LEU A 226 PRO A 227 0 SHEET 2 A 2 LYS A 233 ILE A 234 -1 O ILE A 234 N LEU A 226 SHEET 1 B 5 GLU A 306 VAL A 308 0 SHEET 2 B 5 ILE A 280 SER A 286 1 N GLY A 284 O GLU A 306 SHEET 3 B 5 SER A 245 TRP A 251 1 N ASN A 249 O ILE A 285 SHEET 4 B 5 ALA A 329 LEU A 333 -1 O ALA A 329 N PHE A 250 SHEET 5 B 5 ILE A 339 LYS A 342 -1 O ALA A 341 N LEU A 332 SHEET 1 C 2 LEU B 226 PRO B 227 0 SHEET 2 C 2 LYS B 233 ILE B 234 -1 O ILE B 234 N LEU B 226 SHEET 1 D 5 GLU B 306 VAL B 308 0 SHEET 2 D 5 ILE B 280 SER B 286 1 N GLY B 284 O VAL B 308 SHEET 3 D 5 SER B 245 TRP B 251 1 N ASN B 249 O ILE B 285 SHEET 4 D 5 ALA B 329 LEU B 333 -1 O ALA B 329 N PHE B 250 SHEET 5 D 5 ILE B 339 LYS B 342 -1 O LEU B 340 N LEU B 332 SHEET 1 E 2 LEU C 226 PRO C 227 0 SHEET 2 E 2 LYS C 233 ILE C 234 -1 O ILE C 234 N LEU C 226 SHEET 1 F 5 GLU C 306 VAL C 308 0 SHEET 2 F 5 ILE C 280 SER C 286 1 N GLY C 284 O GLU C 306 SHEET 3 F 5 SER C 245 TRP C 251 1 N ASN C 249 O ILE C 285 SHEET 4 F 5 ALA C 329 LEU C 333 -1 O ALA C 329 N PHE C 250 SHEET 5 F 5 ILE C 339 LYS C 342 -1 O LEU C 340 N LEU C 332 SHEET 1 G 2 LEU D 226 PRO D 227 0 SHEET 2 G 2 LYS D 233 ILE D 234 -1 O ILE D 234 N LEU D 226 SHEET 1 H 5 GLU D 306 VAL D 308 0 SHEET 2 H 5 ILE D 280 SER D 286 1 N GLY D 284 O GLU D 306 SHEET 3 H 5 SER D 245 TRP D 251 1 N ASN D 249 O ILE D 285 SHEET 4 H 5 ALA D 329 LEU D 333 -1 O ALA D 329 N PHE D 250 SHEET 5 H 5 ILE D 339 LYS D 342 -1 O LEU D 340 N LEU D 332 LINK C GLY A 281 N MSE A 282 1555 1555 1.34 LINK C MSE A 282 N LEU A 283 1555 1555 1.33 LINK C GLY B 281 N MSE B 282 1555 1555 1.34 LINK C MSE B 282 N LEU B 283 1555 1555 1.34 LINK C GLY C 281 N MSE C 282 1555 1555 1.33 LINK C MSE C 282 N LEU C 283 1555 1555 1.34 LINK C GLY D 281 N MSE D 282 1555 1555 1.33 LINK C MSE D 282 N LEU D 283 1555 1555 1.33 CISPEP 1 ILE A 327 PRO A 328 0 -0.82 CISPEP 2 ILE B 327 PRO B 328 0 -8.54 CISPEP 3 ILE C 327 PRO C 328 0 -9.21 CISPEP 4 ILE D 327 PRO D 328 0 -2.86 SITE 1 AC1 9 HOH A 8 HOH A 102 SER A 263 PRO A 328 SITE 2 AC1 9 ALA A 329 ASN A 343 ARG A 345 HOH A 432 SITE 3 AC1 9 ACT A 503 SITE 1 AC2 9 HOH A 8 SER A 263 GLU A 266 ASN A 330 SITE 2 AC2 9 LEU A 344 ARG A 345 LEU A 349 HOH A 457 SITE 3 AC2 9 ACT A 502 SITE 1 AC3 6 HOH B 98 LYS B 275 GLY B 281 MSE B 282 SITE 2 AC3 6 HOH B 503 HOH B 580 SITE 1 AC4 5 HOH C 152 VAL C 289 ASP C 290 LYS C 291 SITE 2 AC4 5 HOH C 663 SITE 1 AC5 6 PRO B 222 PHE B 223 HOH D 74 HOH D 79 SITE 2 AC5 6 HOH D 686 HOH D 688 CRYST1 63.441 96.704 116.489 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008585 0.00000