HEADER FLAVOPROTEIN 17-JAN-09 3FW9 TITLE STRUCTURE OF BERBERINE BRIDGE ENZYME IN COMPLEX WITH (S)-SCOULERINE CAVEAT 3FW9 MAN B 3 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETICULINE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BERBERINE BRIDGE-FORMING ENZYME, BBE, COMPND 5 TETRAHYDROPROTOBERBERINE SYNTHASE; COMPND 6 EC: 1.21.3.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHSCHOLZIA CALIFORNICA; SOURCE 3 ORGANISM_COMMON: CALIFORNIA POPPY; SOURCE 4 ORGANISM_TAXID: 3467; SOURCE 5 GENE: BBE1; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZA KEYWDS BI-COVALENT FLAVINYLATION, N-GLYCOSYLATION, ALAKLOID BIOSYNTHESIS, KEYWDS 2 OXIDOREDUCTASE, ALKALOID METABOLISM, CYTOPLASMIC VESICLE, FAD, KEYWDS 3 FLAVOPROTEIN, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.WINKLER,P.MACHEROUX,K.GRUBER REVDAT 4 06-SEP-23 3FW9 1 HETSYN REVDAT 3 29-JUL-20 3FW9 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 13-JUL-11 3FW9 1 VERSN REVDAT 1 19-MAY-09 3FW9 0 JRNL AUTH A.WINKLER,K.MOTZ,S.RIEDL,M.PUHL,P.MACHEROUX,K.GRUBER JRNL TITL STRUCTURAL ROLES OF BIOCOVALENT FLANINYLATION IN BERBERINE JRNL TITL 2 BRIDGE ENZYME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.WINKLER,A.LYSKOWSKI,S.RIEDL,M.PUHL,T.M.KUTCHAN, REMARK 1 AUTH 2 P.MACHEROUX,K.GRUBER REMARK 1 TITL A CONCERTED MECHANISM FOR BERBERINE BRIDGE ENZYME. REMARK 1 REF NAT. CHEM. BIOL. V. 4 739 2008 REMARK 1 REFN ISSN 1552-4450 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 95974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9700 - 4.6260 0.99 3418 174 0.1680 0.1680 REMARK 3 2 4.6260 - 3.6720 1.00 3246 185 0.1370 0.1510 REMARK 3 3 3.6720 - 3.2080 1.00 3210 150 0.1580 0.1640 REMARK 3 4 3.2080 - 2.9150 1.00 3168 166 0.1720 0.2030 REMARK 3 5 2.9150 - 2.7060 1.00 3162 157 0.1760 0.1950 REMARK 3 6 2.7060 - 2.5460 1.00 3092 180 0.1720 0.1990 REMARK 3 7 2.5460 - 2.4190 1.00 3143 160 0.1630 0.1880 REMARK 3 8 2.4190 - 2.3140 1.00 3091 172 0.1590 0.2030 REMARK 3 9 2.3140 - 2.2250 1.00 3093 180 0.1570 0.1790 REMARK 3 10 2.2250 - 2.1480 1.00 3067 200 0.1600 0.2040 REMARK 3 11 2.1480 - 2.0810 1.00 3056 197 0.1600 0.1860 REMARK 3 12 2.0810 - 2.0210 1.00 3068 155 0.1650 0.1720 REMARK 3 13 2.0210 - 1.9680 1.00 3119 150 0.1650 0.2010 REMARK 3 14 1.9680 - 1.9200 1.00 3099 166 0.1670 0.2010 REMARK 3 15 1.9200 - 1.8760 1.00 3093 148 0.1690 0.1970 REMARK 3 16 1.8760 - 1.8360 1.00 3085 168 0.1690 0.2010 REMARK 3 17 1.8360 - 1.8000 1.00 3055 158 0.1700 0.1890 REMARK 3 18 1.8000 - 1.7660 1.00 3055 157 0.1730 0.2020 REMARK 3 19 1.7660 - 1.7340 1.00 3078 168 0.1700 0.2060 REMARK 3 20 1.7340 - 1.7050 1.00 3078 138 0.1710 0.2160 REMARK 3 21 1.7050 - 1.6770 1.00 3064 152 0.1730 0.2120 REMARK 3 22 1.6770 - 1.6510 1.00 3080 163 0.1780 0.1950 REMARK 3 23 1.6510 - 1.6270 1.00 3070 146 0.1820 0.2310 REMARK 3 24 1.6270 - 1.6040 1.00 3040 174 0.1900 0.2470 REMARK 3 25 1.6040 - 1.5830 1.00 3061 149 0.1970 0.2190 REMARK 3 26 1.5830 - 1.5620 1.00 3033 153 0.2040 0.2200 REMARK 3 27 1.5620 - 1.5430 1.00 3079 158 0.2090 0.2560 REMARK 3 28 1.5430 - 1.5240 1.00 3018 162 0.2160 0.2410 REMARK 3 29 1.5240 - 1.5060 1.00 3094 152 0.2200 0.2540 REMARK 3 30 1.5060 - 1.4890 0.38 1161 60 0.3090 0.3050 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 64.05 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.55500 REMARK 3 B22 (A**2) : -6.55500 REMARK 3 B33 (A**2) : -10.95600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 4294 REMARK 3 ANGLE : 1.029 5855 REMARK 3 CHIRALITY : 0.067 640 REMARK 3 PLANARITY : 0.005 735 REMARK 3 DIHEDRAL : 18.257 1564 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 26:114) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8983 -2.7810 -33.2379 REMARK 3 T TENSOR REMARK 3 T11: 0.1592 T22: 0.2875 REMARK 3 T33: 0.2561 T12: 0.0291 REMARK 3 T13: 0.0017 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 0.4936 L22: 0.9610 REMARK 3 L33: 0.8735 L12: -0.1582 REMARK 3 L13: 0.2163 L23: 0.1966 REMARK 3 S TENSOR REMARK 3 S11: 0.0933 S12: 0.2964 S13: -0.1685 REMARK 3 S21: -0.1776 S22: -0.0407 S23: -0.1025 REMARK 3 S31: 0.0670 S32: 0.2360 S33: -0.0521 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 115:244) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3638 7.5324 -13.9017 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.1199 REMARK 3 T33: 0.1992 T12: -0.0081 REMARK 3 T13: 0.0015 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.7983 L22: 0.5054 REMARK 3 L33: 0.7349 L12: 0.0874 REMARK 3 L13: 0.4015 L23: 0.2297 REMARK 3 S TENSOR REMARK 3 S11: 0.0582 S12: 0.0576 S13: -0.0002 REMARK 3 S21: 0.0142 S22: 0.0253 S23: -0.0395 REMARK 3 S31: -0.0037 S32: 0.1047 S33: -0.0719 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 245:349) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0751 -7.3168 4.4395 REMARK 3 T TENSOR REMARK 3 T11: 0.1499 T22: 0.1331 REMARK 3 T33: 0.2389 T12: -0.0134 REMARK 3 T13: -0.0127 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.4822 L22: 0.2218 REMARK 3 L33: 0.5986 L12: 0.4276 REMARK 3 L13: -0.0772 L23: -0.1857 REMARK 3 S TENSOR REMARK 3 S11: 0.0562 S12: -0.2220 S13: -0.0945 REMARK 3 S21: 0.0327 S22: -0.0451 S23: 0.0170 REMARK 3 S31: 0.0803 S32: -0.0003 S33: -0.0118 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 350:460) REMARK 3 ORIGIN FOR THE GROUP (A): -39.1067 -4.0280 -10.2457 REMARK 3 T TENSOR REMARK 3 T11: 0.1263 T22: 0.1512 REMARK 3 T33: 0.2338 T12: -0.0090 REMARK 3 T13: -0.0004 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.0264 L22: 0.6537 REMARK 3 L33: 0.4510 L12: 0.4837 REMARK 3 L13: -0.0278 L23: -0.0559 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: 0.0876 S13: -0.0464 REMARK 3 S21: 0.0345 S22: 0.0376 S23: 0.0304 REMARK 3 S31: 0.0228 S32: -0.0630 S33: -0.0600 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 461:520) REMARK 3 ORIGIN FOR THE GROUP (A): -36.7031 12.2810 -27.1826 REMARK 3 T TENSOR REMARK 3 T11: 0.1586 T22: 0.1605 REMARK 3 T33: 0.2496 T12: 0.0430 REMARK 3 T13: 0.0068 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 0.8689 L22: 0.0938 REMARK 3 L33: 1.2074 L12: -0.3237 REMARK 3 L13: 0.2756 L23: -0.2079 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: 0.1107 S13: 0.1425 REMARK 3 S21: -0.0256 S22: -0.0132 S23: 0.0969 REMARK 3 S31: -0.1972 S32: -0.2270 S33: -0.0772 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95974 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.489 REMARK 200 RESOLUTION RANGE LOW (A) : 45.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.60000 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3D2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUMCHLORIDE, 30% PEG-4000, REMARK 280 0.1 M TRIS/HCL, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.58500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.36000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.36000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.79250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.36000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.36000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 185.37750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.36000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.36000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.79250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.36000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.36000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 185.37750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.58500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1017 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 101 -82.21 -105.77 REMARK 500 SER A 101 -80.58 -106.80 REMARK 500 TYR A 111 18.93 -146.71 REMARK 500 GLU A 287 -122.27 51.23 REMARK 500 PHE A 313 56.69 -149.17 REMARK 500 PHE A 392 -136.74 -94.79 REMARK 500 ARG A 409 -120.27 -117.09 REMARK 500 HIS A 459 48.63 -107.51 REMARK 500 HIS A 459 44.90 -105.11 REMARK 500 LEU A 491 -127.29 44.85 REMARK 500 ASP A 505 59.00 -144.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 524 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 4 O REMARK 620 2 HOH A 5 O 91.3 REMARK 620 3 ASP A 45 OD1 85.4 100.1 REMARK 620 4 ASP A 47 OD1 93.0 175.6 81.3 REMARK 620 5 HOH A 576 O 177.6 90.7 92.9 85.0 REMARK 620 6 HOH A 578 O 93.0 89.7 170.2 89.1 88.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D2D RELATED DB: PDB REMARK 900 RELATED ID: 3D2H RELATED DB: PDB REMARK 900 RELATED ID: 3D2J RELATED DB: PDB REMARK 900 RELATED ID: 3FW7 RELATED DB: PDB REMARK 900 RELATED ID: 3FW8 RELATED DB: PDB DBREF 3FW9 A 26 520 UNP P30986 RETO_ESCCA 26 520 SEQRES 1 A 495 ASP LEU LEU SER CYS LEU THR PHE ASN GLY VAL ARG ASN SEQRES 2 A 495 HIS THR VAL PHE SER ALA ASP SER ASP SER ASP PHE ASN SEQRES 3 A 495 ARG PHE LEU HIS LEU SER ILE GLN ASN PRO LEU PHE GLN SEQRES 4 A 495 ASN SER LEU ILE SER LYS PRO SER ALA ILE ILE LEU PRO SEQRES 5 A 495 GLY SER LYS GLU GLU LEU SER ASN THR ILE ARG CYS ILE SEQRES 6 A 495 ARG LYS GLY SER TRP THR ILE ARG LEU ARG SER GLY GLY SEQRES 7 A 495 HIS SER TYR GLU GLY LEU SER TYR THR SER ASP THR PRO SEQRES 8 A 495 PHE ILE LEU ILE ASP LEU MET ASN LEU ASN ARG VAL SER SEQRES 9 A 495 ILE ASP LEU GLU SER GLU THR ALA TRP VAL GLU SER GLY SEQRES 10 A 495 SER THR LEU GLY GLU LEU TYR TYR ALA ILE THR GLU SER SEQRES 11 A 495 SER SER LYS LEU GLY PHE THR ALA GLY TRP CYS PRO THR SEQRES 12 A 495 VAL GLY THR GLY GLY HIS ILE SER GLY GLY GLY PHE GLY SEQRES 13 A 495 MET MET SER ARG LYS TYR GLY LEU ALA ALA ASP ASN VAL SEQRES 14 A 495 VAL ASP ALA ILE LEU ILE ASP ALA ASN GLY ALA ILE LEU SEQRES 15 A 495 ASP ARG GLN ALA MET GLY GLU ASP VAL PHE TRP ALA ILE SEQRES 16 A 495 ARG GLY GLY GLY GLY GLY VAL TRP GLY ALA ILE TYR ALA SEQRES 17 A 495 TRP LYS ILE LYS LEU LEU PRO VAL PRO GLU LYS VAL THR SEQRES 18 A 495 VAL PHE ARG VAL THR LYS ASN VAL ALA ILE ASP GLU ALA SEQRES 19 A 495 THR SER LEU LEU HIS LYS TRP GLN PHE VAL ALA GLU GLU SEQRES 20 A 495 LEU GLU GLU ASP PHE THR LEU SER VAL LEU GLY GLY ALA SEQRES 21 A 495 ASP GLU LYS GLN VAL TRP LEU THR MET LEU GLY PHE HIS SEQRES 22 A 495 PHE GLY LEU LYS THR VAL ALA LYS SER THR PHE ASP LEU SEQRES 23 A 495 LEU PHE PRO GLU LEU GLY LEU VAL GLU GLU ASP TYR LEU SEQRES 24 A 495 GLU MET SER TRP GLY GLU SER PHE ALA TYR LEU ALA GLY SEQRES 25 A 495 LEU GLU THR VAL SER GLN LEU ASN ASN ARG PHE LEU LYS SEQRES 26 A 495 PHE ASP GLU ARG ALA PHE LYS THR LYS VAL ASP LEU THR SEQRES 27 A 495 LYS GLU PRO LEU PRO SER LYS ALA PHE TYR GLY LEU LEU SEQRES 28 A 495 GLU ARG LEU SER LYS GLU PRO ASN GLY PHE ILE ALA LEU SEQRES 29 A 495 ASN GLY PHE GLY GLY GLN MET SER LYS ILE SER SER ASP SEQRES 30 A 495 PHE THR PRO PHE PRO HIS ARG SER GLY THR ARG LEU MET SEQRES 31 A 495 VAL GLU TYR ILE VAL ALA TRP ASN GLN SER GLU GLN LYS SEQRES 32 A 495 LYS LYS THR GLU PHE LEU ASP TRP LEU GLU LYS VAL TYR SEQRES 33 A 495 GLU PHE MET LYS PRO PHE VAL SER LYS ASN PRO ARG LEU SEQRES 34 A 495 GLY TYR VAL ASN HIS ILE ASP LEU ASP LEU GLY GLY ILE SEQRES 35 A 495 ASP TRP GLY ASN LYS THR VAL VAL ASN ASN ALA ILE GLU SEQRES 36 A 495 ILE SER ARG SER TRP GLY GLU SER TYR PHE LEU SER ASN SEQRES 37 A 495 TYR GLU ARG LEU ILE ARG ALA LYS THR LEU ILE ASP PRO SEQRES 38 A 495 ASN ASN VAL PHE ASN HIS PRO GLN SER ILE PRO PRO MET SEQRES 39 A 495 ALA MODRES 3FW9 ASN A 38 ASN GLYCOSYLATION SITE MODRES 3FW9 ASN A 471 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET FAD A 1 53 HET SLX A 2 24 HET NAG A 523 14 HET MG A 524 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SLX (13AS)-3,10-DIMETHOXY-5,8,13,13A-TETRAHYDRO-6H- HETNAM 2 SLX ISOQUINO[3,2-A]ISOQUINOLINE-2,9-DIOL HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN SLX (S)-SCOULERINE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 MAN C6 H12 O6 FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 SLX C19 H21 N O4 FORMUL 6 MG MG 2+ FORMUL 7 HOH *603(H2 O) HELIX 1 1 ASP A 26 ASN A 34 1 9 HELIX 2 2 SER A 48 SER A 57 1 10 HELIX 3 3 ASN A 60 GLN A 64 5 5 HELIX 4 4 SER A 79 LYS A 92 1 14 HELIX 5 5 THR A 144 SER A 156 1 13 HELIX 6 6 GLY A 170 GLY A 177 1 8 HELIX 7 7 MET A 183 GLY A 188 1 6 HELIX 8 8 LEU A 189 ASP A 192 5 4 HELIX 9 9 ASP A 208 GLY A 213 1 6 HELIX 10 10 GLY A 213 ARG A 221 1 9 HELIX 11 11 ALA A 255 LEU A 273 1 19 HELIX 12 12 LEU A 301 PHE A 313 1 13 HELIX 13 13 PRO A 314 GLY A 317 5 4 HELIX 14 14 VAL A 319 TYR A 323 5 5 HELIX 15 15 SER A 327 ALA A 336 1 10 HELIX 16 16 THR A 340 ASN A 346 5 7 HELIX 17 17 PRO A 368 GLU A 382 1 15 HELIX 18 18 GLY A 393 LYS A 398 5 6 HELIX 19 19 ASN A 423 LYS A 428 5 6 HELIX 20 20 LYS A 429 LYS A 445 1 17 HELIX 21 21 PRO A 446 VAL A 448 5 3 HELIX 22 22 TYR A 456 ILE A 460 5 5 HELIX 23 23 ASP A 461 GLY A 465 5 5 HELIX 24 24 ASN A 471 ASN A 477 1 7 HELIX 25 25 ASN A 477 LEU A 491 1 15 HELIX 26 26 ASN A 493 ASP A 505 1 13 SHEET 1 A 4 HIS A 39 VAL A 41 0 SHEET 2 A 4 ALA A 73 ILE A 75 -1 O ILE A 74 N THR A 40 SHEET 3 A 4 PHE A 117 ASP A 121 1 O LEU A 119 N ILE A 75 SHEET 4 A 4 THR A 96 ARG A 100 1 N ARG A 98 O ILE A 120 SHEET 1 B 5 VAL A 128 ASP A 131 0 SHEET 2 B 5 THR A 136 GLU A 140 -1 O TRP A 138 N SER A 129 SHEET 3 B 5 ALA A 230 LYS A 237 -1 O TRP A 234 N VAL A 139 SHEET 4 B 5 VAL A 194 ILE A 200 -1 N ILE A 198 O TYR A 232 SHEET 5 B 5 ILE A 206 LEU A 207 -1 O LEU A 207 N LEU A 199 SHEET 1 C 2 LEU A 159 GLY A 160 0 SHEET 2 C 2 LEU A 239 PRO A 240 -1 O LEU A 239 N GLY A 160 SHEET 1 D 7 LEU A 324 MET A 326 0 SHEET 2 D 7 VAL A 245 VAL A 254 -1 N VAL A 245 O MET A 326 SHEET 3 D 7 GLN A 289 HIS A 298 -1 O MET A 294 N VAL A 250 SHEET 4 D 7 PHE A 277 ASP A 286 -1 N LEU A 282 O THR A 293 SHEET 5 D 7 GLY A 385 GLY A 391 -1 O LEU A 389 N VAL A 281 SHEET 6 D 7 LEU A 414 TRP A 422 -1 O MET A 415 N ASN A 390 SHEET 7 D 7 ALA A 355 LEU A 362 -1 N ASP A 361 O VAL A 416 SSBOND 1 CYS A 30 CYS A 89 1555 1555 2.04 LINK C8M FAD A 1 ND1 HIS A 104 1555 1555 1.64 LINK C6 FAD A 1 SG CYS A 166 1555 1555 1.79 LINK ND2 ASN A 38 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 471 C1 NAG A 523 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.44 LINK O HOH A 4 MG MG A 524 1555 1555 2.22 LINK O HOH A 5 MG MG A 524 1555 1555 2.03 LINK OD1 ASP A 45 MG MG A 524 1555 1555 2.39 LINK OD1 ASP A 47 MG MG A 524 1555 1555 2.12 LINK MG MG A 524 O HOH A 576 1555 1555 2.00 LINK MG MG A 524 O HOH A 578 1555 1555 2.17 CISPEP 1 ASN A 451 PRO A 452 0 0.08 CRYST1 68.720 68.720 247.170 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014552 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004046 0.00000