HEADER FLAVOPROTEIN 17-JAN-09 3FWA TITLE STRUCTURE OF BERBERINE BRIDGE ENZYME, C166A VARIANT IN COMPLEX WITH TITLE 2 (S)-RETICULINE CAVEAT 3FWA MAN B 3 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETICULINE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BERBERINE BRIDGE-FORMING ENZYME, BBE, COMPND 5 TETRAHYDROPROTOBERBERINE SYNTHASE; COMPND 6 EC: 1.21.3.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHSCHOLZIA CALIFORNICA; SOURCE 3 ORGANISM_COMMON: CALIFORNIA POPPY; SOURCE 4 ORGANISM_TAXID: 3467; SOURCE 5 GENE: BBE1; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZA KEYWDS BI-COVALENT FLAVINYLATION, N-GLYCOSYLATION, ALAKLOID BIOSYNTHESIS, KEYWDS 2 OXIDOREDUCTASE, ALKALOID METABOLISM, CYTOPLASMIC VESICLE, FAD, KEYWDS 3 FLAVOPROTEIN, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.WINKLER,P.MACHEROUX,K.GRUBER REVDAT 5 06-SEP-23 3FWA 1 REMARK REVDAT 4 20-OCT-21 3FWA 1 SEQADV HETSYN REVDAT 3 29-JUL-20 3FWA 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 13-JUL-11 3FWA 1 VERSN REVDAT 1 19-MAY-09 3FWA 0 JRNL AUTH A.WINKLER,K.MOTZ,S.RIEDL,M.PUHL,P.MACHEROUX,K.GRUBER JRNL TITL STRUCTURAL ROLES OF BIOCOVALENT FLANINYLATION IN BERBERINE JRNL TITL 2 BRIDGE ENZYME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.WINKLER,A.LYSKOWSKI,S.RIEDL,M.PUHL,T.M.KUTCHAN, REMARK 1 AUTH 2 P.MACHEROUX,K.GRUBER REMARK 1 TITL A CONCERTED MECHANISM FOR BERBERINE BRIDGE ENZYME. REMARK 1 REF NAT. CHEM. BIOL. V. 4 739 2008 REMARK 1 REFN ISSN 1552-4450 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 95673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9080 - 4.6460 0.99 3377 170 0.1790 0.1860 REMARK 3 2 4.6460 - 3.6880 1.00 3187 193 0.1370 0.1560 REMARK 3 3 3.6880 - 3.2220 1.00 3135 197 0.1480 0.1510 REMARK 3 4 3.2220 - 2.9280 1.00 3146 163 0.1610 0.1650 REMARK 3 5 2.9280 - 2.7180 1.00 3098 158 0.1680 0.1660 REMARK 3 6 2.7180 - 2.5580 1.00 3062 175 0.1650 0.1750 REMARK 3 7 2.5580 - 2.4300 1.00 3103 174 0.1610 0.1780 REMARK 3 8 2.4300 - 2.3240 1.00 3081 156 0.1590 0.1870 REMARK 3 9 2.3240 - 2.2340 1.00 3077 140 0.1550 0.1750 REMARK 3 10 2.2340 - 2.1570 1.00 3082 133 0.1510 0.1730 REMARK 3 11 2.1570 - 2.0900 1.00 3052 159 0.1470 0.1650 REMARK 3 12 2.0900 - 2.0300 1.00 3039 154 0.1520 0.1640 REMARK 3 13 2.0300 - 1.9770 1.00 3071 141 0.1490 0.1660 REMARK 3 14 1.9770 - 1.9290 1.00 3063 145 0.1480 0.1910 REMARK 3 15 1.9290 - 1.8850 1.00 3063 153 0.1560 0.1680 REMARK 3 16 1.8850 - 1.8450 1.00 3030 161 0.1520 0.1720 REMARK 3 17 1.8450 - 1.8080 1.00 2998 164 0.1570 0.1690 REMARK 3 18 1.8080 - 1.7740 1.00 3011 160 0.1580 0.1870 REMARK 3 19 1.7740 - 1.7420 1.00 3046 156 0.1510 0.1650 REMARK 3 20 1.7420 - 1.7120 1.00 3034 149 0.1480 0.1610 REMARK 3 21 1.7120 - 1.6850 1.00 3010 167 0.1540 0.1690 REMARK 3 22 1.6850 - 1.6590 1.00 3029 152 0.1560 0.1820 REMARK 3 23 1.6590 - 1.6340 1.00 2998 162 0.1660 0.1800 REMARK 3 24 1.6340 - 1.6110 0.99 3005 170 0.1590 0.1810 REMARK 3 25 1.6110 - 1.5900 0.99 2982 167 0.1610 0.1720 REMARK 3 26 1.5900 - 1.5690 1.00 2993 158 0.1620 0.1740 REMARK 3 27 1.5690 - 1.5490 1.00 3038 167 0.1770 0.2050 REMARK 3 28 1.5490 - 1.5310 1.00 2969 152 0.1790 0.2370 REMARK 3 29 1.5310 - 1.5130 1.00 3022 168 0.1880 0.2260 REMARK 3 30 1.5130 - 1.4960 0.71 2092 116 0.2180 0.2540 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 49.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.85400 REMARK 3 B22 (A**2) : -1.85400 REMARK 3 B33 (A**2) : -1.46600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4429 REMARK 3 ANGLE : 1.065 6066 REMARK 3 CHIRALITY : 0.067 662 REMARK 3 PLANARITY : 0.005 758 REMARK 3 DIHEDRAL : 18.276 1628 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 26:114) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1065 -2.2840 -33.3374 REMARK 3 T TENSOR REMARK 3 T11: 0.1111 T22: 0.1698 REMARK 3 T33: 0.0898 T12: 0.0085 REMARK 3 T13: 0.0009 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.5989 L22: 0.7830 REMARK 3 L33: 0.2117 L12: 0.0727 REMARK 3 L13: -0.1860 L23: 0.0297 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: 0.1672 S13: -0.0851 REMARK 3 S21: -0.1762 S22: -0.0357 S23: -0.0861 REMARK 3 S31: 0.0255 S32: 0.0450 S33: 0.0436 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 115:244) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9815 8.1220 -13.9443 REMARK 3 T TENSOR REMARK 3 T11: 0.0516 T22: 0.0705 REMARK 3 T33: 0.0443 T12: -0.0081 REMARK 3 T13: -0.0049 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.4993 L22: 0.4065 REMARK 3 L33: 0.3420 L12: 0.0235 REMARK 3 L13: 0.1304 L23: 0.1832 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.0125 S13: 0.0025 REMARK 3 S21: 0.0281 S22: 0.0262 S23: -0.0255 REMARK 3 S31: -0.0238 S32: 0.0650 S33: -0.0183 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 245:350) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3201 -7.0388 4.3667 REMARK 3 T TENSOR REMARK 3 T11: 0.0978 T22: 0.0943 REMARK 3 T33: 0.1032 T12: -0.0090 REMARK 3 T13: -0.0121 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.3907 L22: 0.2974 REMARK 3 L33: 0.4754 L12: 0.4252 REMARK 3 L13: 0.0598 L23: -0.3559 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: -0.2118 S13: -0.0281 REMARK 3 S21: 0.0271 S22: -0.0232 S23: 0.0542 REMARK 3 S31: 0.0755 S32: -0.0147 S33: -0.0253 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 351:456) REMARK 3 ORIGIN FOR THE GROUP (A): -39.3335 -4.1946 -9.8936 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.0987 REMARK 3 T33: 0.0963 T12: -0.0082 REMARK 3 T13: -0.0027 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.6064 L22: 0.3874 REMARK 3 L33: 0.4429 L12: 0.3612 REMARK 3 L13: -0.0027 L23: -0.2847 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.0406 S13: -0.0385 REMARK 3 S21: 0.0079 S22: 0.0646 S23: 0.0261 REMARK 3 S31: 0.0386 S32: -0.0511 S33: -0.0672 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 457:522) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4565 11.6148 -26.9372 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.1186 REMARK 3 T33: 0.0963 T12: 0.0171 REMARK 3 T13: -0.0050 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 0.4717 L22: 0.2325 REMARK 3 L33: 0.2844 L12: -0.1282 REMARK 3 L13: 0.2382 L23: 0.0429 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: 0.0780 S13: 0.0411 REMARK 3 S21: -0.0546 S22: -0.0123 S23: 0.0769 REMARK 3 S31: -0.0934 S32: -0.0744 S33: -0.0222 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FWA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95673 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.496 REMARK 200 RESOLUTION RANGE LOW (A) : 41.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23300 REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3D2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUMCHLORIDE, 30% PEG-4000, REMARK 280 0.1 M TRIS/HCL, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.23000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.43500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.61500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.43500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 184.84500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.43500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.43500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.61500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.43500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.43500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 184.84500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.23000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1130 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 101 -82.08 -107.92 REMARK 500 TYR A 111 18.23 -145.08 REMARK 500 GLU A 287 -122.79 53.39 REMARK 500 PHE A 313 57.98 -148.55 REMARK 500 ASP A 352 -57.33 -148.28 REMARK 500 GLU A 353 18.89 84.94 REMARK 500 PHE A 392 -137.61 -96.82 REMARK 500 ARG A 409 -121.90 -117.95 REMARK 500 HIS A 459 49.36 -102.95 REMARK 500 HIS A 459 50.70 -103.77 REMARK 500 LEU A 491 -128.44 44.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 526 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 4 O REMARK 620 2 HOH A 5 O 92.2 REMARK 620 3 ASP A 45 OD1 83.1 106.4 REMARK 620 4 HOH A 565 O 167.5 95.9 85.4 REMARK 620 5 HOH A 573 O 99.3 83.9 169.4 91.0 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D3D RELATED DB: PDB REMARK 900 RELATED ID: 3D2H RELATED DB: PDB REMARK 900 RELATED ID: 3D2J RELATED DB: PDB REMARK 900 RELATED ID: 3FW7 RELATED DB: PDB REMARK 900 RELATED ID: 3FW8 RELATED DB: PDB REMARK 900 RELATED ID: 3FW9 RELATED DB: PDB DBREF 3FWA A 26 522 UNP P30986 RETO_ESCCA 26 522 SEQADV 3FWA ALA A 166 UNP P30986 CYS 166 ENGINEERED MUTATION SEQRES 1 A 497 ASP LEU LEU SER CYS LEU THR PHE ASN GLY VAL ARG ASN SEQRES 2 A 497 HIS THR VAL PHE SER ALA ASP SER ASP SER ASP PHE ASN SEQRES 3 A 497 ARG PHE LEU HIS LEU SER ILE GLN ASN PRO LEU PHE GLN SEQRES 4 A 497 ASN SER LEU ILE SER LYS PRO SER ALA ILE ILE LEU PRO SEQRES 5 A 497 GLY SER LYS GLU GLU LEU SER ASN THR ILE ARG CYS ILE SEQRES 6 A 497 ARG LYS GLY SER TRP THR ILE ARG LEU ARG SER GLY GLY SEQRES 7 A 497 HIS SER TYR GLU GLY LEU SER TYR THR SER ASP THR PRO SEQRES 8 A 497 PHE ILE LEU ILE ASP LEU MET ASN LEU ASN ARG VAL SER SEQRES 9 A 497 ILE ASP LEU GLU SER GLU THR ALA TRP VAL GLU SER GLY SEQRES 10 A 497 SER THR LEU GLY GLU LEU TYR TYR ALA ILE THR GLU SER SEQRES 11 A 497 SER SER LYS LEU GLY PHE THR ALA GLY TRP ALA PRO THR SEQRES 12 A 497 VAL GLY THR GLY GLY HIS ILE SER GLY GLY GLY PHE GLY SEQRES 13 A 497 MET MET SER ARG LYS TYR GLY LEU ALA ALA ASP ASN VAL SEQRES 14 A 497 VAL ASP ALA ILE LEU ILE ASP ALA ASN GLY ALA ILE LEU SEQRES 15 A 497 ASP ARG GLN ALA MET GLY GLU ASP VAL PHE TRP ALA ILE SEQRES 16 A 497 ARG GLY GLY GLY GLY GLY VAL TRP GLY ALA ILE TYR ALA SEQRES 17 A 497 TRP LYS ILE LYS LEU LEU PRO VAL PRO GLU LYS VAL THR SEQRES 18 A 497 VAL PHE ARG VAL THR LYS ASN VAL ALA ILE ASP GLU ALA SEQRES 19 A 497 THR SER LEU LEU HIS LYS TRP GLN PHE VAL ALA GLU GLU SEQRES 20 A 497 LEU GLU GLU ASP PHE THR LEU SER VAL LEU GLY GLY ALA SEQRES 21 A 497 ASP GLU LYS GLN VAL TRP LEU THR MET LEU GLY PHE HIS SEQRES 22 A 497 PHE GLY LEU LYS THR VAL ALA LYS SER THR PHE ASP LEU SEQRES 23 A 497 LEU PHE PRO GLU LEU GLY LEU VAL GLU GLU ASP TYR LEU SEQRES 24 A 497 GLU MET SER TRP GLY GLU SER PHE ALA TYR LEU ALA GLY SEQRES 25 A 497 LEU GLU THR VAL SER GLN LEU ASN ASN ARG PHE LEU LYS SEQRES 26 A 497 PHE ASP GLU ARG ALA PHE LYS THR LYS VAL ASP LEU THR SEQRES 27 A 497 LYS GLU PRO LEU PRO SER LYS ALA PHE TYR GLY LEU LEU SEQRES 28 A 497 GLU ARG LEU SER LYS GLU PRO ASN GLY PHE ILE ALA LEU SEQRES 29 A 497 ASN GLY PHE GLY GLY GLN MET SER LYS ILE SER SER ASP SEQRES 30 A 497 PHE THR PRO PHE PRO HIS ARG SER GLY THR ARG LEU MET SEQRES 31 A 497 VAL GLU TYR ILE VAL ALA TRP ASN GLN SER GLU GLN LYS SEQRES 32 A 497 LYS LYS THR GLU PHE LEU ASP TRP LEU GLU LYS VAL TYR SEQRES 33 A 497 GLU PHE MET LYS PRO PHE VAL SER LYS ASN PRO ARG LEU SEQRES 34 A 497 GLY TYR VAL ASN HIS ILE ASP LEU ASP LEU GLY GLY ILE SEQRES 35 A 497 ASP TRP GLY ASN LYS THR VAL VAL ASN ASN ALA ILE GLU SEQRES 36 A 497 ILE SER ARG SER TRP GLY GLU SER TYR PHE LEU SER ASN SEQRES 37 A 497 TYR GLU ARG LEU ILE ARG ALA LYS THR LEU ILE ASP PRO SEQRES 38 A 497 ASN ASN VAL PHE ASN HIS PRO GLN SER ILE PRO PRO MET SEQRES 39 A 497 ALA ASN PHE MODRES 3FWA ASN A 38 ASN GLYCOSYLATION SITE MODRES 3FWA ASN A 471 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET FAD A 1 53 HET REN A 2 48 HET NAG A 525 14 HET MG A 526 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM REN (S)-RETICULINE HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN REN (1S)-1-(3-HYDROXY-4-METHOXYBENZYL)-6-METHOXY-2-METHYL- HETSYN 2 REN 1,2,3,4-TETRAHYDROISOQUINOLIN-7-OL FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 MAN C6 H12 O6 FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 REN C19 H23 N O4 FORMUL 6 MG MG 2+ FORMUL 7 HOH *639(H2 O) HELIX 1 1 ASP A 26 ASN A 34 1 9 HELIX 2 2 SER A 48 SER A 57 1 10 HELIX 3 3 ASN A 60 GLN A 64 5 5 HELIX 4 4 SER A 79 LYS A 92 1 14 HELIX 5 5 THR A 144 SER A 156 1 13 HELIX 6 6 GLY A 170 GLY A 177 1 8 HELIX 7 7 MET A 183 GLY A 188 1 6 HELIX 8 8 LEU A 189 ASP A 192 5 4 HELIX 9 9 ASP A 208 GLY A 213 1 6 HELIX 10 10 GLY A 213 ARG A 221 1 9 HELIX 11 11 ALA A 255 LEU A 273 1 19 HELIX 12 12 LEU A 301 PHE A 313 1 13 HELIX 13 13 PRO A 314 GLY A 317 5 4 HELIX 14 14 VAL A 319 TYR A 323 5 5 HELIX 15 15 SER A 327 ALA A 336 1 10 HELIX 16 16 THR A 340 ASN A 346 5 7 HELIX 17 17 PRO A 368 LYS A 381 1 14 HELIX 18 18 GLY A 393 LYS A 398 5 6 HELIX 19 19 ASN A 423 LYS A 428 5 6 HELIX 20 20 LYS A 429 LYS A 445 1 17 HELIX 21 21 TYR A 456 ILE A 460 5 5 HELIX 22 22 ASP A 461 GLY A 465 5 5 HELIX 23 23 ASN A 471 ASN A 477 1 7 HELIX 24 24 ASN A 477 LEU A 491 1 15 HELIX 25 25 ASN A 493 ASP A 505 1 13 SHEET 1 A 4 HIS A 39 VAL A 41 0 SHEET 2 A 4 ALA A 73 ILE A 75 -1 O ILE A 74 N THR A 40 SHEET 3 A 4 PHE A 117 ASP A 121 1 O LEU A 119 N ILE A 75 SHEET 4 A 4 THR A 96 ARG A 100 1 N ARG A 98 O ILE A 120 SHEET 1 B 5 VAL A 128 ASP A 131 0 SHEET 2 B 5 THR A 136 GLU A 140 -1 O TRP A 138 N SER A 129 SHEET 3 B 5 ALA A 230 LYS A 237 -1 O TRP A 234 N VAL A 139 SHEET 4 B 5 VAL A 194 ILE A 200 -1 N ILE A 198 O TYR A 232 SHEET 5 B 5 ILE A 206 LEU A 207 -1 O LEU A 207 N LEU A 199 SHEET 1 C 2 LEU A 159 GLY A 160 0 SHEET 2 C 2 LEU A 239 PRO A 240 -1 O LEU A 239 N GLY A 160 SHEET 1 D 7 LEU A 324 MET A 326 0 SHEET 2 D 7 VAL A 245 VAL A 254 -1 N VAL A 245 O MET A 326 SHEET 3 D 7 GLN A 289 HIS A 298 -1 O MET A 294 N VAL A 250 SHEET 4 D 7 PHE A 277 ASP A 286 -1 N LEU A 282 O THR A 293 SHEET 5 D 7 GLY A 385 GLY A 391 -1 O LEU A 389 N VAL A 281 SHEET 6 D 7 LEU A 414 TRP A 422 -1 O GLU A 417 N ALA A 388 SHEET 7 D 7 ALA A 355 LEU A 362 -1 N ASP A 361 O VAL A 416 SSBOND 1 CYS A 30 CYS A 89 1555 1555 2.04 LINK C8M FAD A 1 ND1 HIS A 104 1555 1555 1.53 LINK ND2 ASN A 38 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 471 C1 NAG A 525 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.44 LINK O HOH A 4 MG MG A 526 1555 1555 1.93 LINK O HOH A 5 MG MG A 526 1555 1555 2.22 LINK OD1 ASP A 45 MG MG A 526 1555 1555 2.39 LINK MG MG A 526 O HOH A 565 1555 1555 1.77 LINK MG MG A 526 O HOH A 573 1555 1555 1.96 CISPEP 1 ASN A 451 PRO A 452 0 1.25 CRYST1 68.870 68.870 246.460 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014520 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004057 0.00000