HEADER TRANSFERASE, HYDROLASE 19-JAN-09 3FWM OBSLTE 14-MAR-12 3FWM 3VMA TITLE CRYSTAL STRUCTURE OF THE FULL-LENGTH TRANSGLYCOSYLASE PBP1B FROM TITLE 2 ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 1B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 54-804; COMPND 5 SYNONYM: PBP-1B, PBP1B, MUREIN POLYMERASE, PENICILLIN-INSENSITIVE COMPND 6 TRANSGLYCOSYLASE, PEPTIDOGLYCAN GLYCOSYLTRANSFERASE, PEPTIDOGLYCAN COMPND 7 TGASE, PENICILLIN-SENSITIVE TRANSPEPTIDASE, DD-TRANSPEPTIDASE; COMPND 8 EC: 2.4.1.129, 3.4.-.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B0149, JW0145, MRCB, PBPF, PONB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS BACTERIAL CELL WALL SYNTHESIS, PENICILLIN-BINDING PROTEIN, KEYWDS 2 ANTIBIOTICS DESIGN, TRANSFERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.T.SUNG,Y.T.LAI,C.Y.HUANG,L.Y.CHOU,C.H.WONG,C.MA REVDAT 2 14-MAR-12 3FWM 1 OBSLTE VERSN REVDAT 1 02-JUN-09 3FWM 0 JRNL AUTH M.T.SUNG,Y.T.LAI,C.Y.HUANG,L.Y.CHOU,H.W.SHIH,W.C.CHENG, JRNL AUTH 2 C.H.WONG,C.MA JRNL TITL CRYSTAL STRUCTURE OF THE MEMBRANE-BOUND BIFUNCTIONAL JRNL TITL 2 TRANSGLYCOSYLASE PBP1B FROM ESCHERICHIA COLI. JRNL REF PROC.NATL.ACAD.SCI.USA 2009 JRNL REFN ESSN 1091-6490 JRNL PMID 19458048 JRNL DOI 10.1073/PNAS.0904030106 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 59458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9050 - 5.9480 0.89 2755 141 0.2350 0.2780 REMARK 3 2 5.9480 - 4.7270 0.94 2734 156 0.2030 0.2220 REMARK 3 3 4.7270 - 4.1310 0.88 2523 132 0.1670 0.2150 REMARK 3 4 4.1310 - 3.7540 0.94 2702 135 0.1740 0.2210 REMARK 3 5 3.7540 - 3.4860 0.97 2747 130 0.1900 0.2180 REMARK 3 6 3.4860 - 3.2800 0.99 2789 173 0.2000 0.2620 REMARK 3 7 3.2800 - 3.1160 0.99 2805 149 0.1990 0.2660 REMARK 3 8 3.1160 - 2.9810 0.99 2783 132 0.2060 0.2550 REMARK 3 9 2.9810 - 2.8660 0.99 2738 169 0.2040 0.2430 REMARK 3 10 2.8660 - 2.7670 0.98 2796 139 0.1930 0.2450 REMARK 3 11 2.7670 - 2.6810 0.98 2786 119 0.1970 0.2250 REMARK 3 12 2.6810 - 2.6040 0.97 2714 136 0.2050 0.2590 REMARK 3 13 2.6040 - 2.5360 0.97 2733 150 0.2080 0.2820 REMARK 3 14 2.5360 - 2.4740 0.97 2726 151 0.2170 0.2570 REMARK 3 15 2.4740 - 2.4180 0.97 2667 145 0.2160 0.2510 REMARK 3 16 2.4180 - 2.3660 0.97 2767 133 0.2070 0.2330 REMARK 3 17 2.3660 - 2.3190 0.96 2667 139 0.2180 0.2480 REMARK 3 18 2.3190 - 2.2750 0.96 2661 163 0.2370 0.3040 REMARK 3 19 2.2750 - 2.2350 0.95 2631 139 0.2440 0.2960 REMARK 3 20 2.2350 - 2.1970 0.96 2688 148 0.2690 0.3280 REMARK 3 21 2.1970 - 2.1610 0.76 2040 127 0.3440 0.3950 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 62.32 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.42700 REMARK 3 B22 (A**2) : 17.65600 REMARK 3 B33 (A**2) : -11.22900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5399 REMARK 3 ANGLE : 1.327 7339 REMARK 3 CHIRALITY : 0.094 836 REMARK 3 PLANARITY : 0.006 948 REMARK 3 DIHEDRAL : 19.157 2030 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 75:98) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4588 129.9760 22.3989 REMARK 3 T TENSOR REMARK 3 T11: 1.5299 T22: 1.3974 REMARK 3 T33: 1.1170 T12: 0.0945 REMARK 3 T13: 0.0325 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.4001 L22: 0.1714 REMARK 3 L33: 0.0891 L12: 0.0791 REMARK 3 L13: 0.0371 L23: -0.0733 REMARK 3 S TENSOR REMARK 3 S11: 0.2159 S12: 0.3459 S13: -0.1859 REMARK 3 S21: 0.0699 S22: -0.0141 S23: 0.0847 REMARK 3 S31: -0.3800 S32: -0.2322 S33: -0.2395 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 99:109) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5252 107.0208 3.6301 REMARK 3 T TENSOR REMARK 3 T11: 0.8526 T22: 0.3998 REMARK 3 T33: 0.4947 T12: 0.1190 REMARK 3 T13: -0.1729 T23: -0.1055 REMARK 3 L TENSOR REMARK 3 L11: 1.0180 L22: -0.2176 REMARK 3 L33: 1.5111 L12: -0.2649 REMARK 3 L13: -0.0375 L23: -0.7026 REMARK 3 S TENSOR REMARK 3 S11: -0.3710 S12: -0.1985 S13: 0.1596 REMARK 3 S21: 0.5875 S22: 0.1919 S23: 0.0737 REMARK 3 S31: -1.0770 S32: -0.1952 S33: 0.2559 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 110:197) REMARK 3 ORIGIN FOR THE GROUP (A): 55.4097 89.5845 7.1320 REMARK 3 T TENSOR REMARK 3 T11: 0.6174 T22: 0.7560 REMARK 3 T33: 0.4696 T12: -0.0048 REMARK 3 T13: -0.0844 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.4878 L22: 0.6595 REMARK 3 L33: 1.4857 L12: -0.0939 REMARK 3 L13: -0.2320 L23: -0.8567 REMARK 3 S TENSOR REMARK 3 S11: -0.4486 S12: -0.4161 S13: 0.0120 REMARK 3 S21: 0.0967 S22: 0.0387 S23: -0.0471 REMARK 3 S31: -0.1191 S32: 0.6716 S33: 0.2817 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 198:210) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3037 107.4497 -0.6748 REMARK 3 T TENSOR REMARK 3 T11: 0.8187 T22: 0.3192 REMARK 3 T33: 0.6339 T12: 0.0774 REMARK 3 T13: -0.2352 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 1.5730 L22: 1.0554 REMARK 3 L33: 1.0022 L12: -0.9001 REMARK 3 L13: 0.2877 L23: -0.0142 REMARK 3 S TENSOR REMARK 3 S11: -0.0601 S12: -0.2838 S13: 0.6909 REMARK 3 S21: -0.4824 S22: -0.5737 S23: -0.2392 REMARK 3 S31: -0.3505 S32: -0.3362 S33: 0.3778 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 211:233) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5626 115.0851 14.2611 REMARK 3 T TENSOR REMARK 3 T11: 1.0418 T22: 0.6242 REMARK 3 T33: 1.1177 T12: -0.0892 REMARK 3 T13: -0.2286 T23: -0.1506 REMARK 3 L TENSOR REMARK 3 L11: 0.6579 L22: 0.5122 REMARK 3 L33: 0.5440 L12: -0.0192 REMARK 3 L13: 0.0324 L23: 0.4224 REMARK 3 S TENSOR REMARK 3 S11: 0.2318 S12: -0.2719 S13: 0.8681 REMARK 3 S21: -0.3815 S22: -0.1533 S23: -0.5800 REMARK 3 S31: 0.0221 S32: 0.2011 S33: 0.1138 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 267:379) REMARK 3 ORIGIN FOR THE GROUP (A): 47.8622 122.8001 9.6752 REMARK 3 T TENSOR REMARK 3 T11: 1.3396 T22: 0.4484 REMARK 3 T33: 1.1107 T12: -0.0786 REMARK 3 T13: -0.1791 T23: -0.1436 REMARK 3 L TENSOR REMARK 3 L11: 1.0067 L22: 0.3729 REMARK 3 L33: 1.3105 L12: 0.0695 REMARK 3 L13: -0.4048 L23: 0.0457 REMARK 3 S TENSOR REMARK 3 S11: 0.5401 S12: -0.0577 S13: 0.8388 REMARK 3 S21: 0.6295 S22: 0.1203 S23: -0.8953 REMARK 3 S31: -1.2190 S32: -0.2491 S33: -0.5466 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 407:800) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4012 84.0187 -24.1290 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.4316 REMARK 3 T33: 0.2598 T12: -0.0156 REMARK 3 T13: -0.0256 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.6247 L22: 1.6907 REMARK 3 L33: 1.7295 L12: 0.0611 REMARK 3 L13: 0.0590 L23: 0.7705 REMARK 3 S TENSOR REMARK 3 S11: -0.0892 S12: 0.1122 S13: -0.0269 REMARK 3 S21: -0.1311 S22: 0.0177 S23: -0.0672 REMARK 3 S31: -0.1639 S32: -0.0193 S33: 0.0678 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JAN-09. REMARK 100 THE RCSB ID CODE IS RCSB051133. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60816 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7520 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM TRIS, 300MM NACL, 0.28MM N- REMARK 280 DODECYL-N,N-DIMETHYLAMINE-N-OXIDE (LDAO), 1.2M SODIUM FORMATE, 3% REMARK 280 6-AMINOHEXANOIC ACID, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.45000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 144.76700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.45000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 144.76700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 54 REMARK 465 SER A 55 REMARK 465 HIS A 56 REMARK 465 MET A 57 REMARK 465 LYS A 58 REMARK 465 PRO A 59 REMARK 465 ARG A 60 REMARK 465 GLY A 61 REMARK 465 LYS A 62 REMARK 465 ARG A 63 REMARK 465 GLY A 64 REMARK 465 TRP A 65 REMARK 465 LEU A 66 REMARK 465 TRP A 67 REMARK 465 LEU A 68 REMARK 465 LEU A 69 REMARK 465 LEU A 70 REMARK 465 LYS A 71 REMARK 465 LEU A 72 REMARK 465 ALA A 73 REMARK 465 ILE A 74 REMARK 465 ASP A 234 REMARK 465 ARG A 235 REMARK 465 HIS A 236 REMARK 465 PHE A 237 REMARK 465 TYR A 238 REMARK 465 GLU A 239 REMARK 465 HIS A 240 REMARK 465 ASP A 241 REMARK 465 GLY A 242 REMARK 465 ILE A 243 REMARK 465 SER A 244 REMARK 465 LEU A 245 REMARK 465 TYR A 246 REMARK 465 SER A 247 REMARK 465 ILE A 248 REMARK 465 GLY A 249 REMARK 465 ARG A 250 REMARK 465 ALA A 251 REMARK 465 VAL A 252 REMARK 465 LEU A 253 REMARK 465 ALA A 254 REMARK 465 ASN A 255 REMARK 465 LEU A 256 REMARK 465 THR A 257 REMARK 465 ALA A 258 REMARK 465 GLY A 259 REMARK 465 ARG A 260 REMARK 465 THR A 261 REMARK 465 VAL A 262 REMARK 465 GLN A 263 REMARK 465 GLY A 264 REMARK 465 ALA A 265 REMARK 465 SER A 266 REMARK 465 LEU A 380 REMARK 465 GLN A 381 REMARK 465 GLN A 382 REMARK 465 GLN A 383 REMARK 465 GLN A 384 REMARK 465 ILE A 385 REMARK 465 ILE A 386 REMARK 465 ASP A 387 REMARK 465 GLN A 388 REMARK 465 GLU A 389 REMARK 465 LEU A 390 REMARK 465 TYR A 391 REMARK 465 ASP A 392 REMARK 465 MET A 393 REMARK 465 LEU A 394 REMARK 465 SER A 395 REMARK 465 ALA A 396 REMARK 465 ARG A 397 REMARK 465 PRO A 398 REMARK 465 LEU A 399 REMARK 465 GLY A 400 REMARK 465 VAL A 401 REMARK 465 GLN A 402 REMARK 465 PRO A 403 REMARK 465 ARG A 404 REMARK 465 GLY A 405 REMARK 465 GLY A 406 REMARK 465 GLN A 801 REMARK 465 GLN A 802 REMARK 465 PRO A 803 REMARK 465 SER A 804 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 792 O HOH A 1203 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 78 31.73 -95.30 REMARK 500 TYR A 83 -9.16 -59.81 REMARK 500 ARG A 92 -61.38 -123.30 REMARK 500 ASP A 96 58.79 -92.33 REMARK 500 THR A 140 -25.27 -149.77 REMARK 500 SER A 164 121.48 169.32 REMARK 500 ASP A 176 63.20 -106.91 REMARK 500 ASN A 189 19.69 57.29 REMARK 500 SER A 206 128.49 -28.29 REMARK 500 ASP A 223 -60.43 -21.53 REMARK 500 SER A 279 -163.63 -108.63 REMARK 500 GLU A 281 -176.37 -50.59 REMARK 500 TYR A 284 -55.44 -21.64 REMARK 500 LYS A 303 -92.22 -29.49 REMARK 500 ARG A 364 -78.26 -54.91 REMARK 500 ARG A 378 27.14 -72.86 REMARK 500 VAL A 430 -68.11 -133.91 REMARK 500 LEU A 470 137.84 -177.17 REMARK 500 PRO A 543 136.62 -33.63 REMARK 500 ASN A 544 116.56 -20.53 REMARK 500 GLN A 657 40.62 -154.71 REMARK 500 HIS A 694 47.75 38.94 REMARK 500 ASP A 714 -168.48 -107.89 REMARK 500 LYS A 732 -12.80 72.17 REMARK 500 ASP A 789 75.42 -159.54 REMARK 500 PRO A 790 10.13 -46.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 791 SER A 792 147.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 677 24.6 L L OUTSIDE RANGE REMARK 500 TYR A 734 23.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1196 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A1198 DISTANCE = 6.01 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 M0E A 901 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE M0E A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FWL RELATED DB: PDB DBREF 3FWM A 58 804 UNP P02919 PBPB_ECOLI 58 804 SEQADV 3FWM GLY A 54 UNP P02919 EXPRESSION TAG SEQADV 3FWM SER A 55 UNP P02919 EXPRESSION TAG SEQADV 3FWM HIS A 56 UNP P02919 EXPRESSION TAG SEQADV 3FWM MET A 57 UNP P02919 EXPRESSION TAG SEQRES 1 A 751 GLY SER HIS MET LYS PRO ARG GLY LYS ARG GLY TRP LEU SEQRES 2 A 751 TRP LEU LEU LEU LYS LEU ALA ILE VAL PHE ALA VAL LEU SEQRES 3 A 751 ILE ALA ILE TYR GLY VAL TYR LEU ASP GLN LYS ILE ARG SEQRES 4 A 751 SER ARG ILE ASP GLY LYS VAL TRP GLN LEU PRO ALA ALA SEQRES 5 A 751 VAL TYR GLY ARG MET VAL ASN LEU GLU PRO ASP MET THR SEQRES 6 A 751 ILE SER LYS ASN GLU MET VAL LYS LEU LEU GLU ALA THR SEQRES 7 A 751 GLN TYR ARG GLN VAL SER LYS MET THR ARG PRO GLY GLU SEQRES 8 A 751 PHE THR VAL GLN ALA ASN SER ILE GLU MET ILE ARG ARG SEQRES 9 A 751 PRO PHE ASP PHE PRO ASP SER LYS GLU GLY GLN VAL ARG SEQRES 10 A 751 ALA ARG LEU THR PHE ASP GLY ASP HIS LEU ALA THR ILE SEQRES 11 A 751 VAL ASN MET GLU ASN ASN ARG GLN PHE GLY PHE PHE ARG SEQRES 12 A 751 LEU ASP PRO ARG LEU ILE THR MET ILE SER SER PRO ASN SEQRES 13 A 751 GLY GLU GLN ARG LEU PHE VAL PRO ARG SER GLY PHE PRO SEQRES 14 A 751 ASP LEU LEU VAL ASP THR LEU LEU ALA THR GLU ASP ARG SEQRES 15 A 751 HIS PHE TYR GLU HIS ASP GLY ILE SER LEU TYR SER ILE SEQRES 16 A 751 GLY ARG ALA VAL LEU ALA ASN LEU THR ALA GLY ARG THR SEQRES 17 A 751 VAL GLN GLY ALA SER THR LEU THR GLN GLN LEU VAL LYS SEQRES 18 A 751 ASN LEU PHE LEU SER SER GLU ARG SER TYR TRP ARG LYS SEQRES 19 A 751 ALA ASN GLU ALA TYR MET ALA LEU ILE MET ASP ALA ARG SEQRES 20 A 751 TYR SER LYS ASP ARG ILE LEU GLU LEU TYR MET ASN GLU SEQRES 21 A 751 VAL TYR LEU GLY GLN SER GLY ASP ASN GLU ILE ARG GLY SEQRES 22 A 751 PHE PRO LEU ALA SER LEU TYR TYR PHE GLY ARG PRO VAL SEQRES 23 A 751 GLU GLU LEU SER LEU ASP GLN GLN ALA LEU LEU VAL GLY SEQRES 24 A 751 MET VAL LYS GLY ALA SER ILE TYR ASN PRO TRP ARG ASN SEQRES 25 A 751 PRO LYS LEU ALA LEU GLU ARG ARG ASN LEU VAL LEU ARG SEQRES 26 A 751 LEU LEU GLN GLN GLN GLN ILE ILE ASP GLN GLU LEU TYR SEQRES 27 A 751 ASP MET LEU SER ALA ARG PRO LEU GLY VAL GLN PRO ARG SEQRES 28 A 751 GLY GLY VAL ILE SER PRO GLN PRO ALA PHE MET GLN LEU SEQRES 29 A 751 VAL ARG GLN GLU LEU GLN ALA LYS LEU GLY ASP LYS VAL SEQRES 30 A 751 LYS ASP LEU SER GLY VAL LYS ILE PHE THR THR PHE ASP SEQRES 31 A 751 SER VAL ALA GLN ASP ALA ALA GLU LYS ALA ALA VAL GLU SEQRES 32 A 751 GLY ILE PRO ALA LEU LYS LYS GLN ARG LYS LEU SER ASP SEQRES 33 A 751 LEU GLU THR ALA ILE VAL VAL VAL ASP ARG PHE SER GLY SEQRES 34 A 751 GLU VAL ARG ALA MET VAL GLY GLY SER GLU PRO GLN PHE SEQRES 35 A 751 ALA GLY TYR ASN ARG ALA MET GLN ALA ARG ARG SER ILE SEQRES 36 A 751 GLY SER LEU ALA LYS PRO ALA THR TYR LEU THR ALA LEU SEQRES 37 A 751 SER GLN PRO LYS ILE TYR ARG LEU ASN THR TRP ILE ALA SEQRES 38 A 751 ASP ALA PRO ILE ALA LEU ARG GLN PRO ASN GLY GLN VAL SEQRES 39 A 751 TRP SER PRO GLN ASN ASP ASP ARG ARG TYR SER GLU SER SEQRES 40 A 751 GLY ARG VAL MET LEU VAL ASP ALA LEU THR ARG SER MET SEQRES 41 A 751 ASN VAL PRO THR VAL ASN LEU GLY MET ALA LEU GLY LEU SEQRES 42 A 751 PRO ALA VAL THR GLU THR TRP ILE LYS LEU GLY VAL PRO SEQRES 43 A 751 LYS ASP GLN LEU HIS PRO VAL PRO ALA MET LEU LEU GLY SEQRES 44 A 751 ALA LEU ASN LEU THR PRO ILE GLU VAL ALA GLN ALA PHE SEQRES 45 A 751 GLN THR ILE ALA SER GLY GLY ASN ARG ALA PRO LEU SER SEQRES 46 A 751 ALA LEU ARG SER VAL ILE ALA GLU ASP GLY LYS VAL LEU SEQRES 47 A 751 TYR GLN SER PHE PRO GLN ALA GLU ARG ALA VAL PRO ALA SEQRES 48 A 751 GLN ALA ALA TYR LEU THR LEU TRP THR MET GLN GLN VAL SEQRES 49 A 751 VAL GLN ARG GLY THR GLY ARG GLN LEU GLY ALA LYS TYR SEQRES 50 A 751 PRO ASN LEU HIS LEU ALA GLY LYS THR GLY THR THR ASN SEQRES 51 A 751 ASN ASN VAL ASP THR TRP PHE ALA GLY ILE ASP GLY SER SEQRES 52 A 751 THR VAL THR ILE THR TRP VAL GLY ARG ASP ASN ASN GLN SEQRES 53 A 751 PRO THR LYS LEU TYR GLY ALA SER GLY ALA MET SER ILE SEQRES 54 A 751 TYR GLN ARG TYR LEU ALA ASN GLN THR PRO THR PRO LEU SEQRES 55 A 751 ASN LEU VAL PRO PRO GLU ASP ILE ALA ASP MET GLY VAL SEQRES 56 A 751 ASP TYR ASP GLY ASN PHE VAL CYS SER GLY GLY MET ARG SEQRES 57 A 751 ILE LEU PRO VAL TRP THR SER ASP PRO GLN SER LEU CYS SEQRES 58 A 751 GLN GLN SER GLU MET GLN GLN GLN PRO SER HET M0E A 901 77 HETNAM M0E MOENOMYCIN HETSYN M0E MOENOMYCIN FORMUL 2 M0E C69 H106 N5 O34 P FORMUL 3 HOH *235(H2 O) HELIX 1 1 ALA A 77 ALA A 81 5 5 HELIX 2 2 GLN A 89 ARG A 94 1 6 HELIX 3 3 SER A 120 ALA A 130 1 11 HELIX 4 4 PRO A 222 LEU A 230 1 9 HELIX 5 5 THR A 267 LEU A 278 1 12 HELIX 6 6 ARG A 282 TYR A 301 1 20 HELIX 7 7 SER A 302 MET A 311 1 10 HELIX 8 8 GLY A 326 PHE A 335 1 10 HELIX 9 9 PRO A 338 LEU A 342 5 5 HELIX 10 10 SER A 343 VAL A 354 1 12 HELIX 11 11 PRO A 366 ARG A 378 1 13 HELIX 12 12 GLN A 411 GLY A 427 1 17 HELIX 13 13 ASP A 443 LYS A 466 1 24 HELIX 14 14 ASN A 499 ALA A 504 1 6 HELIX 15 15 GLY A 509 LEU A 511 5 3 HELIX 16 16 ALA A 512 SER A 522 1 11 HELIX 17 17 LEU A 565 ARG A 571 1 7 HELIX 18 18 MET A 573 GLY A 585 1 13 HELIX 19 19 GLY A 585 GLY A 597 1 13 HELIX 20 20 PRO A 599 LEU A 603 5 5 HELIX 21 21 VAL A 606 GLY A 612 5 7 HELIX 22 22 THR A 617 SER A 630 1 14 HELIX 23 23 PRO A 663 ARG A 680 1 18 HELIX 24 24 GLY A 683 TYR A 690 1 8 HELIX 25 25 PRO A 691 HIS A 694 5 4 HELIX 26 26 ASN A 703 ASN A 705 5 3 HELIX 27 27 ALA A 736 ASN A 749 1 14 HELIX 28 28 GLN A 791 GLU A 798 1 8 SHEET 1 A 5 LEU A 201 ILE A 205 0 SHEET 2 A 5 ALA A 104 TYR A 107 -1 N VAL A 106 O THR A 203 SHEET 3 A 5 LYS A 437 THR A 440 1 O ILE A 438 N ALA A 105 SHEET 4 A 5 LEU A 640 ILE A 644 -1 O ILE A 644 N LYS A 437 SHEET 5 A 5 VAL A 650 GLN A 653 -1 O LEU A 651 N VAL A 643 SHEET 1 B 2 ASN A 112 LEU A 113 0 SHEET 2 B 2 PHE A 195 ARG A 196 -1 O PHE A 195 N LEU A 113 SHEET 1 C 6 ARG A 134 GLN A 135 0 SHEET 2 C 6 GLU A 144 GLN A 148 1 O PHE A 145 N ARG A 134 SHEET 3 C 6 SER A 151 ARG A 156 -1 O GLU A 153 N THR A 146 SHEET 4 C 6 VAL A 169 ASP A 176 -1 O ALA A 171 N MET A 154 SHEET 5 C 6 HIS A 179 ASN A 185 -1 O ALA A 181 N THR A 174 SHEET 6 C 6 ARG A 190 GLN A 191 -1 O ARG A 190 N ASN A 185 SHEET 1 D 2 PHE A 159 PHE A 161 0 SHEET 2 D 2 SER A 164 GLU A 166 -1 O SER A 164 N PHE A 161 SHEET 1 E 3 GLU A 211 GLN A 212 0 SHEET 2 E 3 ASN A 322 ARG A 325 1 O GLU A 323 N GLN A 212 SHEET 3 E 3 TYR A 315 SER A 319 -1 N SER A 319 O ASN A 322 SHEET 1 F 5 VAL A 484 VAL A 488 0 SHEET 2 F 5 GLU A 471 ASP A 478 -1 N ILE A 474 O VAL A 488 SHEET 3 F 5 THR A 717 GLY A 724 -1 O ILE A 720 N VAL A 475 SHEET 4 F 5 ASP A 707 ILE A 713 -1 N GLY A 712 O THR A 719 SHEET 5 F 5 ALA A 696 THR A 701 -1 N ALA A 696 O ILE A 713 SHEET 1 G 2 ARG A 506 SER A 507 0 SHEET 2 G 2 ASN A 615 LEU A 616 -1 O LEU A 616 N ARG A 506 SHEET 1 H 2 TRP A 532 ALA A 534 0 SHEET 2 H 2 ARG A 562 MET A 564 -1 O VAL A 563 N ILE A 533 SHEET 1 I 2 LEU A 540 ARG A 541 0 SHEET 2 I 2 VAL A 547 TRP A 548 -1 O TRP A 548 N LEU A 540 SHEET 1 J 2 ASN A 633 ARG A 634 0 SHEET 2 J 2 GLU A 659 ARG A 660 -1 O GLU A 659 N ARG A 634 SHEET 1 K 3 PHE A 774 VAL A 775 0 SHEET 2 K 3 ILE A 763 VAL A 768 -1 N GLY A 767 O VAL A 775 SHEET 3 K 3 ARG A 781 TRP A 786 -1 O LEU A 783 N MET A 766 CISPEP 1 GLU A 281 ARG A 282 0 7.61 CISPEP 2 ASN A 544 GLY A 545 0 -4.58 SITE 1 AC1 15 GLN A 271 LYS A 274 ASN A 275 GLU A 281 SITE 2 AC1 15 SER A 283 ARG A 286 TYR A 315 GLN A 318 SITE 3 AC1 15 GLU A 323 VAL A 354 LYS A 355 GLY A 356 SITE 4 AC1 15 ALA A 357 SER A 358 ILE A 359 CRYST1 62.900 289.534 62.776 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003454 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015930 0.00000