HEADER TRANSFERASE 21-JAN-09 3FY0 TITLE CRYSTAL STRUCTURE OF PAK1 KINASE DOMAIN WITH RUTHENIUM COMPLEX DW1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 249-545; COMPND 5 SYNONYM: P21-ACTIVATED KINASE 1, PAK-1, P65-PAK, ALPHA-PAK; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO KEYWDS TRANSFERASE, KINASE, ATP-BINDING, PHOSPHORYLATION, ALLOSTERIC ENZYME, KEYWDS 2 APOPTOSIS, CELL JUNCTION, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, KEYWDS 3 SERINE/THREONINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR J.MAKSIMOSKA,R.MARMORSTEIN,E.MEGGERS REVDAT 5 06-NOV-24 3FY0 1 REMARK REVDAT 4 20-OCT-21 3FY0 1 REMARK SEQADV LINK REVDAT 3 01-NOV-17 3FY0 1 REMARK REVDAT 2 13-JUL-11 3FY0 1 VERSN REVDAT 1 03-MAR-09 3FY0 0 JRNL AUTH J.MAKSIMOSKA,L.FENG,K.HARMS,C.YI,J.KISSIL,R.MARMORSTEIN, JRNL AUTH 2 E.MEGGERS JRNL TITL TARGETING LARGE KINASE ACTIVE SITE WITH RIGID, BULKY JRNL TITL 2 OCTAHEDRAL RUTHENIUM COMPLEXES JRNL REF J.AM.CHEM.SOC. V. 130 15764 2008 JRNL REFN ISSN 0002-7863 JRNL PMID 18973295 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 13418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 716 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 908 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2263 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.388 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.541 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2342 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3211 ; 1.321 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 292 ; 5.987 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;40.723 ;25.579 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;15.565 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.380 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1724 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1110 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1614 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1502 ; 1.531 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2357 ; 2.375 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1093 ; 1.521 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 830 ; 2.407 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 249 A 344 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5360 11.1210 51.7660 REMARK 3 T TENSOR REMARK 3 T11: 0.0268 T22: -0.1253 REMARK 3 T33: -0.0095 T12: 0.0357 REMARK 3 T13: -0.0271 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 3.5626 L22: 5.0191 REMARK 3 L33: 1.0891 L12: -2.6714 REMARK 3 L13: -0.0406 L23: 0.7134 REMARK 3 S TENSOR REMARK 3 S11: 0.1834 S12: 0.2401 S13: -0.3145 REMARK 3 S21: -0.4173 S22: -0.2062 S23: 0.4125 REMARK 3 S31: -0.2269 S32: 0.0075 S33: 0.0228 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 345 A 541 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7340 35.1390 45.6120 REMARK 3 T TENSOR REMARK 3 T11: -0.0252 T22: -0.0733 REMARK 3 T33: -0.0127 T12: 0.0216 REMARK 3 T13: 0.0273 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.0223 L22: 0.8844 REMARK 3 L33: 1.2731 L12: 0.2543 REMARK 3 L13: 0.0196 L23: -0.0087 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: 0.1068 S13: 0.0261 REMARK 3 S21: -0.0772 S22: -0.0061 S23: -0.0619 REMARK 3 S31: 0.0540 S32: 0.1263 S33: -0.0364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051179. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14162 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 1M NACL, 25% PEG REMARK 280 10000, 10MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.17050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.17050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.52500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.33000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.52500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.33000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.17050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.52500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.33000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.17050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.52500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.33000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 542 REMARK 465 ASN A 543 REMARK 465 ASN A 544 REMARK 465 HIS A 545 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 ARG A 258 CG CD NE CZ NH1 NH2 REMARK 470 MET A 288 CG SD CE REMARK 470 GLN A 304 CG CD OE1 NE2 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 ASP A 338 CG OD1 OD2 REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 485 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 280 -143.69 65.83 REMARK 500 ARG A 388 -3.30 79.78 REMARK 500 ASP A 407 84.47 41.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DW1 A 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FXZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PAK1 KINASE DOMAIN WITH RUTHENIUM COMPLEX REMARK 900 LAMBDA-FL172 DBREF 3FY0 A 249 545 UNP Q13153 PAK1_HUMAN 249 545 SEQADV 3FY0 ARG A 299 UNP Q13153 LYS 299 ENGINEERED MUTATION SEQRES 1 A 297 SER ASP GLU GLU ILE LEU GLU LYS LEU ARG SER ILE VAL SEQRES 2 A 297 SER VAL GLY ASP PRO LYS LYS LYS TYR THR ARG PHE GLU SEQRES 3 A 297 LYS ILE GLY GLN GLY ALA SER GLY THR VAL TYR THR ALA SEQRES 4 A 297 MET ASP VAL ALA THR GLY GLN GLU VAL ALA ILE ARG GLN SEQRES 5 A 297 MET ASN LEU GLN GLN GLN PRO LYS LYS GLU LEU ILE ILE SEQRES 6 A 297 ASN GLU ILE LEU VAL MET ARG GLU ASN LYS ASN PRO ASN SEQRES 7 A 297 ILE VAL ASN TYR LEU ASP SER TYR LEU VAL GLY ASP GLU SEQRES 8 A 297 LEU TRP VAL VAL MET GLU TYR LEU ALA GLY GLY SER LEU SEQRES 9 A 297 THR ASP VAL VAL THR GLU THR CYS MET ASP GLU GLY GLN SEQRES 10 A 297 ILE ALA ALA VAL CYS ARG GLU CYS LEU GLN ALA LEU GLU SEQRES 11 A 297 PHE LEU HIS SER ASN GLN VAL ILE HIS ARG ASP ILE LYS SEQRES 12 A 297 SER ASP ASN ILE LEU LEU GLY MET ASP GLY SER VAL LYS SEQRES 13 A 297 LEU THR ASP PHE GLY PHE CYS ALA GLN ILE THR PRO GLU SEQRES 14 A 297 GLN SER LYS ARG SER TPO MET VAL GLY THR PRO TYR TRP SEQRES 15 A 297 MET ALA PRO GLU VAL VAL THR ARG LYS ALA TYR GLY PRO SEQRES 16 A 297 LYS VAL ASP ILE TRP SER LEU GLY ILE MET ALA ILE GLU SEQRES 17 A 297 MET ILE GLU GLY GLU PRO PRO TYR LEU ASN GLU ASN PRO SEQRES 18 A 297 LEU ARG ALA LEU TYR LEU ILE ALA THR ASN GLY THR PRO SEQRES 19 A 297 GLU LEU GLN ASN PRO GLU LYS LEU SER ALA ILE PHE ARG SEQRES 20 A 297 ASP PHE LEU ASN ARG CYS LEU GLU MET ASP VAL GLU LYS SEQRES 21 A 297 ARG GLY SER ALA LYS GLU LEU LEU GLN HIS GLN PHE LEU SEQRES 22 A 297 LYS ILE ALA LYS PRO LEU SER SER LEU THR PRO LEU ILE SEQRES 23 A 297 ALA ALA ALA LYS GLU ALA THR LYS ASN ASN HIS MODRES 3FY0 TPO A 423 THR PHOSPHOTHREONINE HET TPO A 423 11 HET DW1 A 200 31 HETNAM TPO PHOSPHOTHREONINE HETNAM DW1 RUTHENIUM PYRIDOCARBAZOLE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 DW1 C23 H13 N3 O4 RU FORMUL 3 HOH *119(H2 O) HELIX 1 1 SER A 249 VAL A 261 1 13 HELIX 2 2 ASP A 265 LYS A 269 5 5 HELIX 3 3 GLN A 304 GLN A 306 5 3 HELIX 4 4 LYS A 309 GLU A 321 1 13 HELIX 5 5 SER A 351 THR A 359 1 9 HELIX 6 6 ASP A 362 ASN A 383 1 22 HELIX 7 7 LYS A 391 ASP A 393 5 3 HELIX 8 8 THR A 427 MET A 431 5 5 HELIX 9 9 ALA A 432 ARG A 438 1 7 HELIX 10 10 LYS A 444 GLY A 460 1 17 HELIX 11 11 ASN A 468 GLY A 480 1 13 HELIX 12 12 ASN A 486 LEU A 490 5 5 HELIX 13 13 SER A 491 LEU A 502 1 12 HELIX 14 14 SER A 511 LEU A 516 1 6 HELIX 15 15 GLN A 517 ALA A 524 5 8 HELIX 16 16 PRO A 526 SER A 529 5 4 HELIX 17 17 LEU A 530 THR A 541 1 12 SHEET 1 A 5 GLU A 274 GLY A 277 0 SHEET 2 A 5 THR A 283 MET A 288 -1 O VAL A 284 N ILE A 276 SHEET 3 A 5 GLU A 295 ASN A 302 -1 O VAL A 296 N ALA A 287 SHEET 4 A 5 GLU A 339 GLU A 345 -1 O MET A 344 N ALA A 297 SHEET 5 A 5 TYR A 330 VAL A 336 -1 N ASP A 332 O VAL A 343 SHEET 1 B 2 VAL A 385 ILE A 386 0 SHEET 2 B 2 ALA A 412 GLN A 413 -1 O ALA A 412 N ILE A 386 SHEET 1 C 2 ILE A 395 LEU A 397 0 SHEET 2 C 2 VAL A 403 LEU A 405 -1 O LYS A 404 N LEU A 396 LINK C SER A 422 N TPO A 423 1555 1555 1.33 LINK C TPO A 423 N MET A 424 1555 1555 1.33 CISPEP 1 GLY A 279 ALA A 280 0 6.84 SITE 1 AC1 10 ILE A 276 GLY A 277 VAL A 284 ALA A 297 SITE 2 AC1 10 MET A 344 GLU A 345 TYR A 346 LEU A 347 SITE 3 AC1 10 GLY A 350 LEU A 396 CRYST1 53.050 102.660 122.341 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018850 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008174 0.00000 HETATM 1336 N TPO A 423 31.729 33.882 43.849 1.00 30.59 N HETATM 1337 CA TPO A 423 31.347 32.793 42.961 1.00 29.62 C HETATM 1338 CB TPO A 423 31.484 31.435 43.639 1.00 28.83 C HETATM 1339 CG2 TPO A 423 31.704 30.358 42.592 1.00 26.97 C HETATM 1340 OG1 TPO A 423 32.587 31.447 44.549 1.00 31.13 O HETATM 1341 P TPO A 423 32.413 31.237 46.143 1.00 31.42 P HETATM 1342 O1P TPO A 423 31.648 29.931 46.264 1.00 31.21 O HETATM 1343 O2P TPO A 423 33.828 31.222 46.669 1.00 32.37 O HETATM 1344 O3P TPO A 423 31.647 32.428 46.608 1.00 32.09 O HETATM 1345 C TPO A 423 29.959 32.948 42.415 1.00 30.61 C HETATM 1346 O TPO A 423 28.985 33.127 43.157 1.00 28.96 O TER 2264 THR A 541 HETATM 2265 O11 DW1 A 200 12.586 13.096 42.065 1.00 49.73 O HETATM 2266 C10 DW1 A 200 12.660 14.240 42.094 1.00 49.78 C HETATM 2267 RU DW1 A 200 12.859 16.087 42.066 1.00 49.97 RU HETATM 2268 C12 DW1 A 200 12.165 16.762 40.108 1.00 50.97 C HETATM 2269 C13 DW1 A 200 13.386 16.079 39.957 1.00 51.30 C HETATM 2270 C14 DW1 A 200 14.376 16.796 40.630 1.00 50.52 C HETATM 2271 C16 DW1 A 200 13.777 17.928 41.182 1.00 50.15 C HETATM 2272 C17 DW1 A 200 12.413 17.911 40.863 1.00 50.51 C HETATM 2273 N20 DW1 A 200 14.280 15.996 43.683 1.00 50.19 N HETATM 2274 C6 DW1 A 200 15.630 15.859 43.630 1.00 49.90 C HETATM 2275 C5 DW1 A 200 16.365 15.823 44.833 1.00 49.84 C HETATM 2276 C4 DW1 A 200 15.751 15.927 46.101 1.00 49.67 C HETATM 2277 N18 DW1 A 200 11.637 16.258 43.808 1.00 50.11 N HETATM 2278 C22 DW1 A 200 10.379 16.406 44.073 1.00 49.95 C HETATM 2279 C27 DW1 A 200 10.179 16.478 45.460 1.00 49.75 C HETATM 2280 C26 DW1 A 200 8.903 16.634 46.014 1.00 49.93 C HETATM 2281 C25 DW1 A 200 7.784 16.720 45.156 1.00 49.82 C HETATM 2282 C24 DW1 A 200 7.986 16.649 43.760 1.00 49.83 C HETATM 2283 C23 DW1 A 200 9.274 16.493 43.214 1.00 50.01 C HETATM 2284 O15 DW1 A 200 6.504 16.859 45.619 1.00 49.63 O HETATM 2285 C28 DW1 A 200 11.507 16.362 46.021 1.00 49.80 C HETATM 2286 C21 DW1 A 200 12.303 16.246 44.902 1.00 49.87 C HETATM 2287 C7 DW1 A 200 13.678 16.104 44.926 1.00 49.95 C HETATM 2288 C3 DW1 A 200 14.356 16.073 46.161 1.00 49.87 C HETATM 2289 C29 DW1 A 200 12.151 16.342 47.272 1.00 49.85 C HETATM 2290 C2 DW1 A 200 13.559 16.203 47.333 1.00 49.97 C HETATM 2291 C30 DW1 A 200 11.684 16.437 48.590 1.00 49.71 C HETATM 2292 O8 DW1 A 200 10.540 16.562 48.965 1.00 49.91 O HETATM 2293 N19 DW1 A 200 12.735 16.364 49.455 1.00 49.61 N HETATM 2294 C1 DW1 A 200 13.876 16.220 48.699 1.00 49.99 C HETATM 2295 O9 DW1 A 200 14.972 16.124 49.194 1.00 49.89 O HETATM 2296 O HOH A 1 16.675 42.989 35.589 1.00 30.02 O HETATM 2297 O HOH A 2 17.460 38.646 38.047 1.00 25.17 O HETATM 2298 O HOH A 3 16.103 40.576 36.761 1.00 24.33 O HETATM 2299 O HOH A 4 19.524 33.305 45.577 1.00 22.11 O HETATM 2300 O HOH A 5 20.329 33.069 41.307 1.00 28.68 O HETATM 2301 O HOH A 6 18.371 31.249 41.571 1.00 38.82 O HETATM 2302 O HOH A 7 21.909 26.141 47.538 1.00 24.54 O HETATM 2303 O HOH A 8 18.263 21.119 57.529 1.00 39.80 O HETATM 2304 O HOH A 9 8.351 17.320 55.838 1.00 50.75 O HETATM 2305 O HOH A 10 23.383 11.002 60.903 1.00 31.37 O HETATM 2306 O HOH A 12 16.658 20.935 51.409 1.00 44.74 O HETATM 2307 O HOH A 13 2.959 16.777 52.191 1.00 26.11 O HETATM 2308 O HOH A 14 2.173 18.141 54.502 1.00 49.72 O HETATM 2309 O HOH A 15 5.647 48.347 55.474 1.00 14.13 O HETATM 2310 O HOH A 16 24.281 41.630 50.820 1.00 17.01 O HETATM 2311 O HOH A 18 -5.381 39.503 44.953 1.00 28.35 O HETATM 2312 O HOH A 19 4.894 42.183 58.529 1.00 18.77 O HETATM 2313 O HOH A 20 6.181 38.326 58.808 1.00 14.32 O HETATM 2314 O HOH A 21 30.648 0.475 46.281 1.00 20.90 O HETATM 2315 O HOH A 22 26.616 3.998 56.142 1.00 23.62 O HETATM 2316 O HOH A 23 5.167 26.704 56.172 1.00 12.39 O HETATM 2317 O HOH A 24 7.123 36.081 60.127 1.00 16.69 O HETATM 2318 O HOH A 25 -1.082 45.357 55.062 1.00 16.06 O HETATM 2319 O HOH A 26 2.185 52.645 57.643 1.00 14.13 O HETATM 2320 O HOH A 27 18.664 37.738 59.638 1.00 26.41 O HETATM 2321 O HOH A 28 23.392 45.912 42.767 1.00 27.78 O HETATM 2322 O HOH A 29 18.996 39.329 55.378 1.00 20.04 O HETATM 2323 O HOH A 31 15.973 38.101 35.590 1.00 32.43 O HETATM 2324 O HOH A 32 22.815 2.910 61.689 1.00 31.32 O HETATM 2325 O HOH A 33 1.107 42.761 37.389 1.00 33.19 O HETATM 2326 O HOH A 35 29.851 40.028 43.332 1.00 48.02 O HETATM 2327 O HOH A 36 18.387 39.670 57.924 1.00 22.77 O HETATM 2328 O HOH A 37 19.988 22.240 63.143 1.00 20.55 O HETATM 2329 O HOH A 38 5.711 44.960 61.300 1.00 19.66 O HETATM 2330 O HOH A 39 24.700 -2.651 52.413 1.00 30.44 O HETATM 2331 O HOH A 40 24.785 41.681 47.921 1.00 28.86 O HETATM 2332 O HOH A 42 24.672 5.202 63.198 1.00 19.04 O HETATM 2333 O HOH A 43 -3.251 49.994 45.881 1.00 34.32 O HETATM 2334 O HOH A 44 30.472 0.680 53.349 1.00 31.61 O HETATM 2335 O HOH A 45 9.735 50.332 52.685 1.00 39.02 O HETATM 2336 O HOH A 46 -0.925 47.288 56.922 1.00 12.67 O HETATM 2337 O HOH A 47 -2.885 27.286 57.301 1.00 17.37 O HETATM 2338 O HOH A 50 1.524 37.522 57.895 1.00 19.14 O HETATM 2339 O HOH A 51 17.905 18.745 47.351 1.00 41.36 O HETATM 2340 O HOH A 52 25.661 3.276 43.160 1.00 56.45 O HETATM 2341 O HOH A 53 36.913 33.376 59.414 1.00 60.28 O HETATM 2342 O HOH A 54 15.863 0.703 46.682 1.00 41.49 O HETATM 2343 O HOH A 55 -1.953 48.572 49.183 1.00 23.23 O HETATM 2344 O HOH A 56 20.378 48.959 54.963 1.00 31.36 O HETATM 2345 O HOH A 57 23.942 42.189 54.424 1.00 39.64 O HETATM 2346 O HOH A 58 23.607 46.079 53.444 1.00 38.37 O HETATM 2347 O HOH A 59 21.396 41.009 55.410 1.00 25.73 O HETATM 2348 O HOH A 60 21.497 43.267 57.601 1.00 32.00 O HETATM 2349 O HOH A 61 27.615 45.629 50.503 1.00 42.96 O HETATM 2350 O HOH A 62 36.226 31.313 44.207 1.00 55.29 O HETATM 2351 O HOH A 63 5.898 13.406 44.166 1.00 36.84 O HETATM 2352 O HOH A 65 22.339 -0.722 49.130 1.00 37.27 O HETATM 2353 O HOH A 66 18.977 20.286 49.944 1.00 37.65 O HETATM 2354 O HOH A 67 14.592 21.352 43.180 1.00 45.39 O HETATM 2355 O HOH A 68 8.645 30.363 36.307 1.00 33.38 O HETATM 2356 O HOH A 69 12.301 27.161 36.614 1.00 51.82 O HETATM 2357 O HOH A 70 10.806 28.548 35.014 1.00 42.10 O HETATM 2358 O HOH A 71 22.901 33.895 43.770 1.00 33.02 O HETATM 2359 O HOH A 72 27.267 45.655 46.295 1.00 37.08 O HETATM 2360 O HOH A 73 27.196 43.490 47.729 1.00 27.55 O HETATM 2361 O HOH A 74 25.132 48.798 46.103 1.00 41.08 O HETATM 2362 O HOH A 75 18.393 43.477 21.261 1.00 39.93 O HETATM 2363 O HOH A 76 16.123 50.183 42.061 1.00 29.38 O HETATM 2364 O HOH A 77 26.052 13.720 60.954 1.00 36.96 O HETATM 2365 O HOH A 78 32.268 15.762 59.863 1.00 31.84 O HETATM 2366 O HOH A 79 29.894 13.119 62.493 1.00 33.10 O HETATM 2367 O HOH A 80 30.281 15.196 61.240 1.00 21.59 O HETATM 2368 O HOH A 81 34.110 33.864 47.213 1.00 38.76 O HETATM 2369 O HOH A 82 13.168 19.448 44.484 1.00 61.43 O HETATM 2370 O HOH A 83 12.449 22.094 62.163 1.00 33.10 O HETATM 2371 O HOH A 84 8.103 18.914 59.051 1.00 38.32 O HETATM 2372 O HOH A 85 10.775 21.254 58.112 1.00 37.96 O HETATM 2373 O HOH A 87 -0.515 35.831 40.091 1.00 25.73 O HETATM 2374 O HOH A 88 0.427 32.652 40.202 1.00 26.44 O HETATM 2375 O HOH A 89 1.609 32.753 37.669 1.00 26.86 O HETATM 2376 O HOH A 91 1.949 24.736 31.389 1.00 24.37 O HETATM 2377 O HOH A 92 3.681 17.355 41.990 1.00 37.52 O HETATM 2378 O HOH A 93 7.329 19.185 41.125 1.00 36.26 O HETATM 2379 O HOH A 94 5.923 16.781 41.248 1.00 43.15 O HETATM 2380 O HOH A 95 16.570 23.406 40.793 1.00 51.99 O HETATM 2381 O HOH A 96 9.960 36.418 31.110 1.00 26.59 O HETATM 2382 O HOH A 97 24.166 47.687 37.288 1.00 46.91 O HETATM 2383 O HOH A 98 11.300 36.293 28.474 1.00 36.44 O HETATM 2384 O HOH A 99 27.301 22.741 49.078 1.00 29.44 O HETATM 2385 O HOH A 100 34.954 38.463 47.848 1.00 40.44 O HETATM 2386 O HOH A 101 24.030 27.493 62.708 1.00 49.26 O HETATM 2387 O HOH A 102 13.287 33.319 60.882 1.00 30.40 O HETATM 2388 O HOH A 103 36.739 13.029 59.394 1.00 29.69 O HETATM 2389 O HOH A 104 8.634 46.810 64.299 1.00 39.22 O HETATM 2390 O HOH A 105 30.215 5.171 58.994 1.00 23.86 O HETATM 2391 O HOH A 106 29.302 3.731 56.610 1.00 24.20 O HETATM 2392 O HOH A 107 31.163 3.123 54.563 1.00 22.91 O HETATM 2393 O HOH A 108 35.772 4.538 53.435 1.00 38.63 O HETATM 2394 O HOH A 109 31.809 3.514 60.481 1.00 28.92 O HETATM 2395 O HOH A 110 23.110 7.251 63.317 1.00 21.21 O HETATM 2396 O HOH A 111 25.569 13.821 63.488 1.00 27.47 O HETATM 2397 O HOH A 113 26.120 26.383 63.397 1.00 40.67 O HETATM 2398 O HOH A 114 25.212 44.396 52.585 1.00 51.06 O HETATM 2399 O HOH A 115 19.319 41.625 59.413 1.00 43.37 O HETATM 2400 O HOH A 116 9.925 46.560 55.710 1.00 39.26 O HETATM 2401 O HOH A 120 20.966 36.550 43.461 1.00 38.11 O HETATM 2402 O HOH A 121 21.162 49.750 36.162 1.00 47.61 O HETATM 2403 O HOH A 122 8.238 54.716 45.733 1.00 44.90 O HETATM 2404 O HOH A 123 7.262 52.020 46.516 1.00 33.95 O HETATM 2405 O HOH A 125 14.653 9.553 59.237 1.00 39.47 O HETATM 2406 O HOH A 126 22.000 39.431 57.402 1.00 39.76 O HETATM 2407 O HOH A 127 13.474 49.167 43.880 1.00 36.57 O HETATM 2408 O HOH A 128 2.694 19.910 40.899 1.00 38.45 O HETATM 2409 O HOH A 129 15.603 20.023 45.133 1.00 52.77 O HETATM 2410 O HOH A 130 15.191 27.090 36.518 1.00 36.85 O HETATM 2411 O HOH A 131 -3.426 38.453 41.102 1.00 37.65 O HETATM 2412 O HOH A 132 27.600 40.559 53.900 1.00 47.14 O HETATM 2413 O HOH A 133 17.628 24.776 64.460 1.00 27.04 O HETATM 2414 O HOH A 134 24.920 37.280 57.930 1.00 50.01 O CONECT 1332 1336 CONECT 1336 1332 1337 CONECT 1337 1336 1338 1345 CONECT 1338 1337 1339 1340 CONECT 1339 1338 CONECT 1340 1338 1341 CONECT 1341 1340 1342 1343 1344 CONECT 1342 1341 CONECT 1343 1341 CONECT 1344 1341 CONECT 1345 1337 1346 1347 CONECT 1346 1345 CONECT 1347 1345 CONECT 2265 2266 CONECT 2266 2265 2267 CONECT 2267 2266 2269 2273 2277 CONECT 2268 2269 2272 CONECT 2269 2267 2268 2270 CONECT 2270 2269 2271 CONECT 2271 2270 2272 CONECT 2272 2268 2271 CONECT 2273 2267 2274 2287 CONECT 2274 2273 2275 CONECT 2275 2274 2276 CONECT 2276 2275 2288 CONECT 2277 2267 2278 2286 CONECT 2278 2277 2279 2283 CONECT 2279 2278 2280 2285 CONECT 2280 2279 2281 CONECT 2281 2280 2282 2284 CONECT 2282 2281 2283 CONECT 2283 2278 2282 CONECT 2284 2281 CONECT 2285 2279 2286 2289 CONECT 2286 2277 2285 2287 CONECT 2287 2273 2286 2288 CONECT 2288 2276 2287 2290 CONECT 2289 2285 2290 2291 CONECT 2290 2288 2289 2294 CONECT 2291 2289 2292 2293 CONECT 2292 2291 CONECT 2293 2291 2294 CONECT 2294 2290 2293 2295 CONECT 2295 2294 MASTER 344 0 2 17 9 0 3 6 2413 1 44 23 END