data_3FYR # _entry.id 3FYR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3FYR RCSB RCSB051205 WWPDB D_1000051205 # _pdbx_database_status.entry_id 3FYR _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-01-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jacques, D.A.' 1 'Streamer, M.' 2 'King, G.F.' 3 'Guss, J.M.' 4 'Trewhella, J.' 5 'Langley, D.B.' 6 # _citation.id primary _citation.title 'Structure of the sporulation histidine kinase inhibitor Sda from Bacillus subtilis and insights into its solution state' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 65 _citation.page_first 574 _citation.page_last 581 _citation.year 2009 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19465772 _citation.pdbx_database_id_DOI 10.1107/S090744490901169X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jacques, D.A.' 1 primary 'Streamer, M.' 2 primary 'Rowland, S.L.' 3 primary 'King, G.F.' 4 primary 'Guss, J.M.' 5 primary 'Trewhella, J.' 6 primary 'Langley, D.B.' 7 # _cell.length_a 36.972 _cell.length_b 36.972 _cell.length_c 167.173 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3FYR _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 3FYR _symmetry.Int_Tables_number 92 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sporulation inhibitor sda' 5686.198 3 ? ? ? ? 2 water nat water 18.015 8 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'sda, Histidine kinase kinA inhibitor' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GS(MSE)RKLSDELLIESYFKATE(MSE)NLNRDFIELIENEIKRRSLGHIISVSS' _entity_poly.pdbx_seq_one_letter_code_can GSMRKLSDELLIESYFKATEMNLNRDFIELIENEIKRRSLGHIISVSS _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MSE n 1 4 ARG n 1 5 LYS n 1 6 LEU n 1 7 SER n 1 8 ASP n 1 9 GLU n 1 10 LEU n 1 11 LEU n 1 12 ILE n 1 13 GLU n 1 14 SER n 1 15 TYR n 1 16 PHE n 1 17 LYS n 1 18 ALA n 1 19 THR n 1 20 GLU n 1 21 MSE n 1 22 ASN n 1 23 LEU n 1 24 ASN n 1 25 ARG n 1 26 ASP n 1 27 PHE n 1 28 ILE n 1 29 GLU n 1 30 LEU n 1 31 ILE n 1 32 GLU n 1 33 ASN n 1 34 GLU n 1 35 ILE n 1 36 LYS n 1 37 ARG n 1 38 ARG n 1 39 SER n 1 40 LEU n 1 41 GLY n 1 42 HIS n 1 43 ILE n 1 44 ILE n 1 45 SER n 1 46 VAL n 1 47 SER n 1 48 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BSU25690, sda' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'subtilis str. 168' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224308 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Bl21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pET18a _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pSLR65 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SDA_BACSU _struct_ref.pdbx_db_accession Q7WY62 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MRKLSDELLIESYFKATEMNLNRDFIELIENEIKRRSLGHIISVSS _struct_ref.pdbx_align_begin 7 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FYR A 3 ? 48 ? Q7WY62 7 ? 52 ? 1 46 2 1 3FYR B 3 ? 48 ? Q7WY62 7 ? 52 ? 1 46 3 1 3FYR C 3 ? 48 ? Q7WY62 7 ? 52 ? 1 46 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FYR GLY A 1 ? UNP Q7WY62 ? ? 'EXPRESSION TAG' -1 1 1 3FYR SER A 2 ? UNP Q7WY62 ? ? 'EXPRESSION TAG' 0 2 2 3FYR GLY B 1 ? UNP Q7WY62 ? ? 'EXPRESSION TAG' -1 3 2 3FYR SER B 2 ? UNP Q7WY62 ? ? 'EXPRESSION TAG' 0 4 3 3FYR GLY C 1 ? UNP Q7WY62 ? ? 'EXPRESSION TAG' -1 5 3 3FYR SER C 2 ? UNP Q7WY62 ? ? 'EXPRESSION TAG' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3FYR _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.639 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.718006 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 28.405363 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;equal volumes of protein solution (7.5 mg/ml) and well solution (0.1M MES, pH 6.3, 15% (w/v) PEG 5000MME) were combined., VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2008-02-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97945 1.0 2 0.97959 1.0 3 0.94945 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97945, 0.97959, 0.94945' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-D # _reflns.entry_id 3FYR _reflns.d_resolution_high 1.970 _reflns.d_resolution_low 50.000 _reflns.number_obs 8936 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_netI_over_sigmaI 14.873 _reflns.pdbx_chi_squared 1.005 _reflns.pdbx_redundancy 3.600 _reflns.percent_possible_obs 99.500 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.97 _reflns_shell.d_res_low 2.04 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.564 _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.029 _reflns_shell.pdbx_redundancy 3.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1577 _reflns_shell.percent_possible_all 99.90 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3FYR _refine.ls_d_res_high 1.970 _refine.ls_d_res_low 27.69 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.340 _refine.ls_number_reflns_obs 8860 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_obs 0.238 _refine.ls_R_factor_R_work 0.234 _refine.ls_wR_factor_R_work 0.265 _refine.ls_R_factor_R_free 0.304 _refine.ls_wR_factor_R_free 0.325 _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 420 _refine.B_iso_mean 37.902 _refine.aniso_B[1][1] 0.690 _refine.aniso_B[2][2] 0.690 _refine.aniso_B[3][3] -1.380 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.938 _refine.correlation_coeff_Fo_to_Fc_free 0.879 _refine.overall_SU_R_Cruickshank_DPI 0.201 _refine.overall_SU_R_free 0.198 _refine.pdbx_overall_ESU_R 0.201 _refine.pdbx_overall_ESU_R_Free 0.198 _refine.overall_SU_ML 0.136 _refine.overall_SU_B 4.771 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.overall_FOM_work_R_set 0.796 _refine.B_iso_max 77.98 _refine.B_iso_min 21.37 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 880 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 888 _refine_hist.d_res_high 1.970 _refine_hist.d_res_low 27.69 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 887 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 596 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1190 1.074 1.986 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1448 0.866 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 111 4.150 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39 26.584 23.333 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 163 14.848 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 9.248 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 143 0.058 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 973 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 187 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 566 2.041 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 226 0.601 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 889 3.282 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 321 5.052 4.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 301 7.699 6.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.971 _refine_ls_shell.d_res_low 2.022 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.520 _refine_ls_shell.number_reflns_R_work 596 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.294 _refine_ls_shell.R_factor_R_free 0.339 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 627 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FYR _struct.title 'Crystal structure of the sporulation histidine kinase inhibitor Sda from Bacillus subtilis' _struct.pdbx_descriptor 'Sporulation inhibitor sda' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FYR _struct_keywords.pdbx_keywords 'Transferase inhibitor' _struct_keywords.text ;helical hairpin, histidine kinase inhibitor, sporulation regulation, Alternative initiation, Protein kinase inhibitor, Sporulation, Transferase inhibitor ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_biol.id 1 _struct_biol.details ;THE DEPOSITORS HAVE IN DEPENDANT DATA WHICH SUGGESTS THAT IN SOLUTION THE OLIGOMERIC STATE OF THE ASU (IE AN ODD-LOOKING TRIMER) BEST FITS SAXS DATA OF THE PROTEIN IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 7 ? MSE A 21 ? SER A 5 MSE A 19 1 ? 15 HELX_P HELX_P2 2 ASN A 24 ? LEU A 40 ? ASN A 22 LEU A 38 1 ? 17 HELX_P HELX_P3 3 SER B 7 ? MSE B 21 ? SER B 5 MSE B 19 1 ? 15 HELX_P HELX_P4 4 ASN B 24 ? SER B 39 ? ASN B 22 SER B 37 1 ? 16 HELX_P HELX_P5 5 SER C 7 ? MSE C 21 ? SER C 5 MSE C 19 1 ? 15 HELX_P HELX_P6 6 ASN C 24 ? ARG C 38 ? ASN C 22 ARG C 36 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 3 C ? ? ? 1_555 A ARG 4 N ? ? A MSE 1 A ARG 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A GLU 20 C ? ? ? 1_555 A MSE 21 N ? ? A GLU 18 A MSE 19 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A MSE 21 C ? ? ? 1_555 A ASN 22 N ? ? A MSE 19 A ASN 20 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? B MSE 3 C ? ? ? 1_555 B ARG 4 N ? ? B MSE 1 B ARG 2 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale ? ? B GLU 20 C ? ? ? 1_555 B MSE 21 N ? ? B GLU 18 B MSE 19 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? B MSE 21 C ? ? ? 1_555 B ASN 22 N ? ? B MSE 19 B ASN 20 1_555 ? ? ? ? ? ? ? 1.331 ? covale7 covale ? ? C GLU 20 C ? ? ? 1_555 C MSE 21 N ? ? C GLU 18 C MSE 19 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale ? ? C MSE 21 C ? ? ? 1_555 C ASN 22 N ? ? C MSE 19 C ASN 20 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 3FYR _atom_sites.fract_transf_matrix[1][1] 0.027047 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027047 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005982 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 ? ? ? A . n A 1 3 MSE 3 1 1 MSE MSE A . n A 1 4 ARG 4 2 2 ARG ARG A . n A 1 5 LYS 5 3 3 LYS LYS A . n A 1 6 LEU 6 4 4 LEU LEU A . n A 1 7 SER 7 5 5 SER SER A . n A 1 8 ASP 8 6 6 ASP ASP A . n A 1 9 GLU 9 7 7 GLU GLU A . n A 1 10 LEU 10 8 8 LEU LEU A . n A 1 11 LEU 11 9 9 LEU LEU A . n A 1 12 ILE 12 10 10 ILE ILE A . n A 1 13 GLU 13 11 11 GLU GLU A . n A 1 14 SER 14 12 12 SER SER A . n A 1 15 TYR 15 13 13 TYR TYR A . n A 1 16 PHE 16 14 14 PHE PHE A . n A 1 17 LYS 17 15 15 LYS LYS A . n A 1 18 ALA 18 16 16 ALA ALA A . n A 1 19 THR 19 17 17 THR THR A . n A 1 20 GLU 20 18 18 GLU GLU A . n A 1 21 MSE 21 19 19 MSE MSE A . n A 1 22 ASN 22 20 20 ASN ASN A . n A 1 23 LEU 23 21 21 LEU LEU A . n A 1 24 ASN 24 22 22 ASN ASN A . n A 1 25 ARG 25 23 23 ARG ARG A . n A 1 26 ASP 26 24 24 ASP ASP A . n A 1 27 PHE 27 25 25 PHE PHE A . n A 1 28 ILE 28 26 26 ILE ILE A . n A 1 29 GLU 29 27 27 GLU GLU A . n A 1 30 LEU 30 28 28 LEU LEU A . n A 1 31 ILE 31 29 29 ILE ILE A . n A 1 32 GLU 32 30 30 GLU GLU A . n A 1 33 ASN 33 31 31 ASN ASN A . n A 1 34 GLU 34 32 32 GLU GLU A . n A 1 35 ILE 35 33 33 ILE ILE A . n A 1 36 LYS 36 34 34 LYS LYS A . n A 1 37 ARG 37 35 35 ARG ARG A . n A 1 38 ARG 38 36 36 ARG ARG A . n A 1 39 SER 39 37 37 SER SER A . n A 1 40 LEU 40 38 38 LEU LEU A . n A 1 41 GLY 41 39 ? ? ? A . n A 1 42 HIS 42 40 ? ? ? A . n A 1 43 ILE 43 41 ? ? ? A . n A 1 44 ILE 44 42 ? ? ? A . n A 1 45 SER 45 43 ? ? ? A . n A 1 46 VAL 46 44 ? ? ? A . n A 1 47 SER 47 45 ? ? ? A . n A 1 48 SER 48 46 ? ? ? A . n B 1 1 GLY 1 -1 ? ? ? B . n B 1 2 SER 2 0 ? ? ? B . n B 1 3 MSE 3 1 1 MSE MSE B . n B 1 4 ARG 4 2 2 ARG ARG B . n B 1 5 LYS 5 3 3 LYS LYS B . n B 1 6 LEU 6 4 4 LEU LEU B . n B 1 7 SER 7 5 5 SER SER B . n B 1 8 ASP 8 6 6 ASP ASP B . n B 1 9 GLU 9 7 7 GLU GLU B . n B 1 10 LEU 10 8 8 LEU LEU B . n B 1 11 LEU 11 9 9 LEU LEU B . n B 1 12 ILE 12 10 10 ILE ILE B . n B 1 13 GLU 13 11 11 GLU GLU B . n B 1 14 SER 14 12 12 SER SER B . n B 1 15 TYR 15 13 13 TYR TYR B . n B 1 16 PHE 16 14 14 PHE PHE B . n B 1 17 LYS 17 15 15 LYS LYS B . n B 1 18 ALA 18 16 16 ALA ALA B . n B 1 19 THR 19 17 17 THR THR B . n B 1 20 GLU 20 18 18 GLU GLU B . n B 1 21 MSE 21 19 19 MSE MSE B . n B 1 22 ASN 22 20 20 ASN ASN B . n B 1 23 LEU 23 21 21 LEU LEU B . n B 1 24 ASN 24 22 22 ASN ASN B . n B 1 25 ARG 25 23 23 ARG ARG B . n B 1 26 ASP 26 24 24 ASP ASP B . n B 1 27 PHE 27 25 25 PHE PHE B . n B 1 28 ILE 28 26 26 ILE ILE B . n B 1 29 GLU 29 27 27 GLU GLU B . n B 1 30 LEU 30 28 28 LEU LEU B . n B 1 31 ILE 31 29 29 ILE ILE B . n B 1 32 GLU 32 30 30 GLU GLU B . n B 1 33 ASN 33 31 31 ASN ASN B . n B 1 34 GLU 34 32 32 GLU GLU B . n B 1 35 ILE 35 33 33 ILE ILE B . n B 1 36 LYS 36 34 34 LYS LYS B . n B 1 37 ARG 37 35 35 ARG ARG B . n B 1 38 ARG 38 36 36 ARG ARG B . n B 1 39 SER 39 37 37 SER SER B . n B 1 40 LEU 40 38 ? ? ? B . n B 1 41 GLY 41 39 ? ? ? B . n B 1 42 HIS 42 40 ? ? ? B . n B 1 43 ILE 43 41 ? ? ? B . n B 1 44 ILE 44 42 ? ? ? B . n B 1 45 SER 45 43 ? ? ? B . n B 1 46 VAL 46 44 ? ? ? B . n B 1 47 SER 47 45 ? ? ? B . n B 1 48 SER 48 46 ? ? ? B . n C 1 1 GLY 1 -1 ? ? ? C . n C 1 2 SER 2 0 ? ? ? C . n C 1 3 MSE 3 1 ? ? ? C . n C 1 4 ARG 4 2 ? ? ? C . n C 1 5 LYS 5 3 3 LYS LYS C . n C 1 6 LEU 6 4 4 LEU LEU C . n C 1 7 SER 7 5 5 SER SER C . n C 1 8 ASP 8 6 6 ASP ASP C . n C 1 9 GLU 9 7 7 GLU GLU C . n C 1 10 LEU 10 8 8 LEU LEU C . n C 1 11 LEU 11 9 9 LEU LEU C . n C 1 12 ILE 12 10 10 ILE ILE C . n C 1 13 GLU 13 11 11 GLU GLU C . n C 1 14 SER 14 12 12 SER SER C . n C 1 15 TYR 15 13 13 TYR TYR C . n C 1 16 PHE 16 14 14 PHE PHE C . n C 1 17 LYS 17 15 15 LYS LYS C . n C 1 18 ALA 18 16 16 ALA ALA C . n C 1 19 THR 19 17 17 THR THR C . n C 1 20 GLU 20 18 18 GLU GLU C . n C 1 21 MSE 21 19 19 MSE MSE C . n C 1 22 ASN 22 20 20 ASN ASN C . n C 1 23 LEU 23 21 21 LEU LEU C . n C 1 24 ASN 24 22 22 ASN ASN C . n C 1 25 ARG 25 23 23 ARG ARG C . n C 1 26 ASP 26 24 24 ASP ASP C . n C 1 27 PHE 27 25 25 PHE PHE C . n C 1 28 ILE 28 26 26 ILE ILE C . n C 1 29 GLU 29 27 27 GLU GLU C . n C 1 30 LEU 30 28 28 LEU LEU C . n C 1 31 ILE 31 29 29 ILE ILE C . n C 1 32 GLU 32 30 30 GLU GLU C . n C 1 33 ASN 33 31 31 ASN ASN C . n C 1 34 GLU 34 32 32 GLU GLU C . n C 1 35 ILE 35 33 33 ILE ILE C . n C 1 36 LYS 36 34 34 LYS LYS C . n C 1 37 ARG 37 35 35 ARG ARG C . n C 1 38 ARG 38 36 36 ARG ARG C . n C 1 39 SER 39 37 37 SER SER C . n C 1 40 LEU 40 38 38 LEU LEU C . n C 1 41 GLY 41 39 39 GLY GLY C . n C 1 42 HIS 42 40 40 HIS HIS C . n C 1 43 ILE 43 41 41 ILE ILE C . n C 1 44 ILE 44 42 ? ? ? C . n C 1 45 SER 45 43 ? ? ? C . n C 1 46 VAL 46 44 ? ? ? C . n C 1 47 SER 47 45 ? ? ? C . n C 1 48 SER 48 46 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 47 2 HOH HOH A . D 2 HOH 2 48 6 HOH HOH A . D 2 HOH 3 49 9 HOH HOH A . D 2 HOH 4 50 10 HOH HOH A . E 2 HOH 1 47 7 HOH HOH B . F 2 HOH 1 47 3 HOH HOH C . F 2 HOH 2 48 4 HOH HOH C . F 2 HOH 3 49 8 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 3 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 21 A MSE 19 ? MET SELENOMETHIONINE 3 B MSE 3 B MSE 1 ? MET SELENOMETHIONINE 4 B MSE 21 B MSE 19 ? MET SELENOMETHIONINE 5 C MSE 21 C MSE 19 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 2 1,2 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2270 ? 1 MORE -22 ? 1 'SSA (A^2)' 6430 ? 2 'ABSA (A^2)' 6360 ? 2 MORE -65 ? 2 'SSA (A^2)' 11030 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 167.1730000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.970 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 15638 _diffrn_reflns.pdbx_Rmerge_I_obs 0.060 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.00 _diffrn_reflns.av_sigmaI_over_netI 14.87 _diffrn_reflns.pdbx_redundancy 3.60 _diffrn_reflns.pdbx_percent_possible_obs 99.50 _diffrn_reflns.number 56720 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 1.97 2.04 ? ? 0.564 ? 1.029 3.10 99.90 1 2.04 2.12 ? ? 0.415 ? 1.018 3.70 99.90 1 2.12 2.22 ? ? 0.293 ? 1.024 3.60 99.90 1 2.22 2.34 ? ? 0.202 ? 0.999 3.60 99.80 1 2.34 2.48 ? ? 0.132 ? 1.009 3.50 99.90 1 2.48 2.67 ? ? 0.100 ? 0.982 3.50 99.80 1 2.67 2.94 ? ? 0.075 ? 0.983 3.50 99.50 1 2.94 3.37 ? ? 0.054 ? 0.999 3.50 99.20 1 3.37 4.24 ? ? 0.049 ? 0.934 3.70 98.80 1 4.24 50.00 ? ? 0.035 ? 1.056 4.60 98.40 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.occupancy _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso 1 Se 0.622 0.753 0.581 0.042 23.934 2 Se 0.370 0.346 0.895 0.021 50.415 3 Se 0.488 0.036 0.634 0.065 56.115 # _phasing.method MAD # _phasing_MAD_clust.id 1 _phasing_MAD_clust.expt_id '3 wavelength' _phasing_MAD_clust.number_set ? # _phasing_MAD_expt.id '3 wavelength' _phasing_MAD_expt.mean_fom ? # loop_ _phasing_MAD_set.clust_id _phasing_MAD_set.expt_id _phasing_MAD_set.set_id _phasing_MAD_set.wavelength _phasing_MAD_set.pdbx_f_prime_refined _phasing_MAD_set.pdbx_f_double_prime_refined 1 '3 wavelength' 1 0.9794 -7.71 6.18 1 '3 wavelength' 2 0.9796 -9.86 3.68 1 '3 wavelength' 3 0.9495 -4.15 3.32 # loop_ _phasing_set.id _phasing_set.pdbx_d_res_high _phasing_set.pdbx_d_res_low 1 . . 2 . . 3 . . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 SOLVE 2.10 8-Jun-2005 program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 RESOLVE . ? program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 # _pdbx_entry_details.entry_id 3FYR _pdbx_entry_details.sequence_details ;THE FIRST 6 RESIDUES, MNWVPS, ARE MISSING IN NATURAL ACCORDING TO REFERENCE 2, SDA_BACSU IN UNIPROT. THERE IS AN ALTERNATE START CODON WHICH THE DEPOSITORS BELIEVE IS SELDOM USED, HENCE THE NUMBERING THEY HAVE EMPLOYED. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN B 22 ? ? -36.87 125.49 2 1 HIS C 40 ? ? -66.19 6.28 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 3 ? CG ? A LYS 5 CG 2 1 Y 1 A LYS 3 ? CD ? A LYS 5 CD 3 1 Y 1 A LYS 3 ? CE ? A LYS 5 CE 4 1 Y 1 A LYS 3 ? NZ ? A LYS 5 NZ 5 1 Y 1 A GLU 7 ? CG ? A GLU 9 CG 6 1 Y 1 A GLU 7 ? CD ? A GLU 9 CD 7 1 Y 1 A GLU 7 ? OE1 ? A GLU 9 OE1 8 1 Y 1 A GLU 7 ? OE2 ? A GLU 9 OE2 9 1 Y 1 A LEU 8 ? CG ? A LEU 10 CG 10 1 Y 1 A LEU 8 ? CD1 ? A LEU 10 CD1 11 1 Y 1 A LEU 8 ? CD2 ? A LEU 10 CD2 12 1 Y 1 A GLU 11 ? CG ? A GLU 13 CG 13 1 Y 1 A GLU 11 ? CD ? A GLU 13 CD 14 1 Y 1 A GLU 11 ? OE1 ? A GLU 13 OE1 15 1 Y 1 A GLU 11 ? OE2 ? A GLU 13 OE2 16 1 Y 1 A ARG 23 ? CG ? A ARG 25 CG 17 1 Y 1 A ARG 23 ? CD ? A ARG 25 CD 18 1 Y 1 A ARG 23 ? NE ? A ARG 25 NE 19 1 Y 1 A ARG 23 ? CZ ? A ARG 25 CZ 20 1 Y 1 A ARG 23 ? NH1 ? A ARG 25 NH1 21 1 Y 1 A ARG 23 ? NH2 ? A ARG 25 NH2 22 1 Y 1 A LYS 34 ? CG ? A LYS 36 CG 23 1 Y 1 A LYS 34 ? CD ? A LYS 36 CD 24 1 Y 1 A LYS 34 ? CE ? A LYS 36 CE 25 1 Y 1 A LYS 34 ? NZ ? A LYS 36 NZ 26 1 Y 1 A LEU 38 ? CG ? A LEU 40 CG 27 1 Y 1 A LEU 38 ? CD1 ? A LEU 40 CD1 28 1 Y 1 A LEU 38 ? CD2 ? A LEU 40 CD2 29 1 Y 1 B ARG 2 ? CG ? B ARG 4 CG 30 1 Y 1 B ARG 2 ? CD ? B ARG 4 CD 31 1 Y 1 B ARG 2 ? NE ? B ARG 4 NE 32 1 Y 1 B ARG 2 ? CZ ? B ARG 4 CZ 33 1 Y 1 B ARG 2 ? NH1 ? B ARG 4 NH1 34 1 Y 1 B ARG 2 ? NH2 ? B ARG 4 NH2 35 1 Y 1 B LYS 3 ? CG ? B LYS 5 CG 36 1 Y 1 B LYS 3 ? CD ? B LYS 5 CD 37 1 Y 1 B LYS 3 ? CE ? B LYS 5 CE 38 1 Y 1 B LYS 3 ? NZ ? B LYS 5 NZ 39 1 Y 1 B ASN 20 ? CG ? B ASN 22 CG 40 1 Y 1 B ASN 20 ? OD1 ? B ASN 22 OD1 41 1 Y 1 B ASN 20 ? ND2 ? B ASN 22 ND2 42 1 Y 1 B ASN 22 ? CG ? B ASN 24 CG 43 1 Y 1 B ASN 22 ? OD1 ? B ASN 24 OD1 44 1 Y 1 B ASN 22 ? ND2 ? B ASN 24 ND2 45 1 Y 1 B ARG 23 ? CG ? B ARG 25 CG 46 1 Y 1 B ARG 23 ? CD ? B ARG 25 CD 47 1 Y 1 B ARG 23 ? NE ? B ARG 25 NE 48 1 Y 1 B ARG 23 ? CZ ? B ARG 25 CZ 49 1 Y 1 B ARG 23 ? NH1 ? B ARG 25 NH1 50 1 Y 1 B ARG 23 ? NH2 ? B ARG 25 NH2 51 1 Y 1 B GLU 27 ? CG ? B GLU 29 CG 52 1 Y 1 B GLU 27 ? CD ? B GLU 29 CD 53 1 Y 1 B GLU 27 ? OE1 ? B GLU 29 OE1 54 1 Y 1 B GLU 27 ? OE2 ? B GLU 29 OE2 55 1 Y 1 B LEU 28 ? CG ? B LEU 30 CG 56 1 Y 1 B LEU 28 ? CD1 ? B LEU 30 CD1 57 1 Y 1 B LEU 28 ? CD2 ? B LEU 30 CD2 58 1 Y 1 B LYS 34 ? CG ? B LYS 36 CG 59 1 Y 1 B LYS 34 ? CD ? B LYS 36 CD 60 1 Y 1 B LYS 34 ? CE ? B LYS 36 CE 61 1 Y 1 B LYS 34 ? NZ ? B LYS 36 NZ 62 1 Y 1 C LYS 3 ? CG ? C LYS 5 CG 63 1 Y 1 C LYS 3 ? CD ? C LYS 5 CD 64 1 Y 1 C LYS 3 ? CE ? C LYS 5 CE 65 1 Y 1 C LYS 3 ? NZ ? C LYS 5 NZ 66 1 Y 1 C GLU 7 ? CG ? C GLU 9 CG 67 1 Y 1 C GLU 7 ? CD ? C GLU 9 CD 68 1 Y 1 C GLU 7 ? OE1 ? C GLU 9 OE1 69 1 Y 1 C GLU 7 ? OE2 ? C GLU 9 OE2 70 1 Y 1 C GLU 18 ? CG ? C GLU 20 CG 71 1 Y 1 C GLU 18 ? CD ? C GLU 20 CD 72 1 Y 1 C GLU 18 ? OE1 ? C GLU 20 OE1 73 1 Y 1 C GLU 18 ? OE2 ? C GLU 20 OE2 74 1 Y 1 C ASN 20 ? CG ? C ASN 22 CG 75 1 Y 1 C ASN 20 ? OD1 ? C ASN 22 OD1 76 1 Y 1 C ASN 20 ? ND2 ? C ASN 22 ND2 77 1 Y 1 C ASN 22 ? CG ? C ASN 24 CG 78 1 Y 1 C ASN 22 ? OD1 ? C ASN 24 OD1 79 1 Y 1 C ASN 22 ? ND2 ? C ASN 24 ND2 80 1 Y 1 C ASP 24 ? CG ? C ASP 26 CG 81 1 Y 1 C ASP 24 ? OD1 ? C ASP 26 OD1 82 1 Y 1 C ASP 24 ? OD2 ? C ASP 26 OD2 83 1 Y 1 C GLU 27 ? CG ? C GLU 29 CG 84 1 Y 1 C GLU 27 ? CD ? C GLU 29 CD 85 1 Y 1 C GLU 27 ? OE1 ? C GLU 29 OE1 86 1 Y 1 C GLU 27 ? OE2 ? C GLU 29 OE2 87 1 Y 1 C ASN 31 ? CG ? C ASN 33 CG 88 1 Y 1 C ASN 31 ? OD1 ? C ASN 33 OD1 89 1 Y 1 C ASN 31 ? ND2 ? C ASN 33 ND2 90 1 Y 1 C SER 37 ? OG ? C SER 39 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A SER 0 ? A SER 2 3 1 Y 1 A GLY 39 ? A GLY 41 4 1 Y 1 A HIS 40 ? A HIS 42 5 1 Y 1 A ILE 41 ? A ILE 43 6 1 Y 1 A ILE 42 ? A ILE 44 7 1 Y 1 A SER 43 ? A SER 45 8 1 Y 1 A VAL 44 ? A VAL 46 9 1 Y 1 A SER 45 ? A SER 47 10 1 Y 1 A SER 46 ? A SER 48 11 1 Y 1 B GLY -1 ? B GLY 1 12 1 Y 1 B SER 0 ? B SER 2 13 1 Y 1 B LEU 38 ? B LEU 40 14 1 Y 1 B GLY 39 ? B GLY 41 15 1 Y 1 B HIS 40 ? B HIS 42 16 1 Y 1 B ILE 41 ? B ILE 43 17 1 Y 1 B ILE 42 ? B ILE 44 18 1 Y 1 B SER 43 ? B SER 45 19 1 Y 1 B VAL 44 ? B VAL 46 20 1 Y 1 B SER 45 ? B SER 47 21 1 Y 1 B SER 46 ? B SER 48 22 1 Y 1 C GLY -1 ? C GLY 1 23 1 Y 1 C SER 0 ? C SER 2 24 1 Y 1 C MSE 1 ? C MSE 3 25 1 Y 1 C ARG 2 ? C ARG 4 26 1 Y 1 C ILE 42 ? C ILE 44 27 1 Y 1 C SER 43 ? C SER 45 28 1 Y 1 C VAL 44 ? C VAL 46 29 1 Y 1 C SER 45 ? C SER 47 30 1 Y 1 C SER 46 ? C SER 48 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #