HEADER ISOMERASE 23-JAN-09 3FYY TITLE CRYSTAL STRUCTURE OF DIVERGENT ENOLASE FROM OCEANOBACILLUS IHEYENSIS TITLE 2 COMPLEXED WITH MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUCONATE CYCLOISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCEANOBACILLUS IHEYENSIS HTE831; SOURCE 3 ORGANISM_TAXID: 221109; SOURCE 4 STRAIN: DSM 14371, JCM 11309, KCTC 3954, HTE831; SOURCE 5 GENE: OB2843; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIVERGENT ENOLASE, NYSGXRC, TARGET 9375A, ISOMERASE, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,J.M.SAUDER,S.K.BURLEY,J.A.GERLT,S.C.ALMO,NEW AUTHOR 2 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 06-SEP-23 3FYY 1 REMARK REVDAT 4 10-FEB-21 3FYY 1 AUTHOR JRNL REMARK LINK REVDAT 3 21-NOV-18 3FYY 1 AUTHOR REVDAT 2 22-DEC-09 3FYY 1 JRNL REVDAT 1 03-FEB-09 3FYY 0 JRNL AUTH J.F.RAKUS,C.KALYANARAMAN,A.A.FEDOROV,E.V.FEDOROV, JRNL AUTH 2 F.P.MILLS-GRONINGER,R.TORO,J.BONANNO,K.BAIN,J.M.SAUDER, JRNL AUTH 3 S.K.BURLEY,S.C.ALMO,M.P.JACOBSON,J.A.GERLT JRNL TITL COMPUTATION-FACILITATED ASSIGNMENT OF THE FUNCTION IN THE JRNL TITL 2 ENOLASE SUPERFAMILY: A REGIOCHEMICALLY DISTINCT GALACTARATE JRNL TITL 3 DEHYDRATASE FROM OCEANOBACILLUS IHEYENSIS . JRNL REF BIOCHEMISTRY V. 48 11546 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19883118 JRNL DOI 10.1021/BI901731C REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2084274.970 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 79723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4004 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7349 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 388 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 578 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.86000 REMARK 3 B22 (A**2) : -2.86000 REMARK 3 B33 (A**2) : 5.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.710 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.170 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.700 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.970 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.770 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 59.16 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : MLT_PAR.TXT REMARK 3 PARAMETER FILE 5 : &_1_PARAMETER_INFILE_5 REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : MLT_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 5 : &_1_TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FYY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79723 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 2OQY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M K/NA TARTRATE, 0.1M TRIS, 0.2M REMARK 280 LITHIUM SULFATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.58100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.58100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.43800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.58100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.58100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.43800 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 60.58100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 60.58100 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 60.43800 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 60.58100 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 60.58100 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 60.43800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 91180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -121.16200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 121.16200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 121.16200 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -121.16200 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 376 REMARK 465 VAL A 377 REMARK 465 THR A 378 REMARK 465 VAL A 379 REMARK 465 HIS A 380 REMARK 465 GLN A 381 REMARK 465 LEU A 382 REMARK 465 GLN A 383 REMARK 465 ASP A 384 REMARK 465 ARG A 385 REMARK 465 THR A 386 REMARK 465 ALA A 387 REMARK 465 ASP A 388 REMARK 465 THR A 389 REMARK 465 LYS A 390 REMARK 465 SER A 391 REMARK 465 ASN B 376 REMARK 465 VAL B 377 REMARK 465 THR B 378 REMARK 465 VAL B 379 REMARK 465 HIS B 380 REMARK 465 GLN B 381 REMARK 465 LEU B 382 REMARK 465 GLN B 383 REMARK 465 ASP B 384 REMARK 465 ARG B 385 REMARK 465 THR B 386 REMARK 465 ALA B 387 REMARK 465 ASP B 388 REMARK 465 THR B 389 REMARK 465 LYS B 390 REMARK 465 SER B 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 85.45 41.44 REMARK 500 LEU A 48 46.21 -73.33 REMARK 500 TYR A 90 40.63 -101.59 REMARK 500 LEU A 215 73.26 -105.17 REMARK 500 GLN A 298 65.42 78.15 REMARK 500 PRO A 323 91.68 -64.52 REMARK 500 ASP A 349 119.85 -37.93 REMARK 500 ASP A 371 -168.42 -162.05 REMARK 500 ASP B 42 84.85 43.60 REMARK 500 LEU B 48 47.09 -76.02 REMARK 500 TYR B 90 41.04 -104.01 REMARK 500 LEU B 215 71.78 -104.15 REMARK 500 PRO B 223 22.34 -79.42 REMARK 500 GLN B 298 64.68 78.10 REMARK 500 PRO B 323 85.28 -60.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42 OD1 REMARK 620 2 HIS A 45 NE2 85.1 REMARK 620 3 THR A 297 O 90.8 169.2 REMARK 620 4 THR A 297 OG1 110.6 91.4 80.7 REMARK 620 5 HOH A 631 O 81.8 97.5 91.7 165.4 REMARK 620 6 HOH A 632 O 151.0 89.1 99.2 97.9 70.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 193 OD2 REMARK 620 2 GLU A 221 OE1 85.3 REMARK 620 3 HIS A 246 NE2 169.2 93.5 REMARK 620 4 HOH A 557 O 79.1 126.3 93.1 REMARK 620 5 HOH A 565 O 88.2 112.5 102.1 117.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 42 OD1 REMARK 620 2 HIS B 45 NE2 82.1 REMARK 620 3 THR B 297 O 96.5 168.8 REMARK 620 4 THR B 297 OG1 109.4 91.4 78.5 REMARK 620 5 HOH B 633 O 90.8 100.9 90.2 157.7 REMARK 620 6 HOH B 634 O 153.8 92.7 93.3 96.3 64.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 193 OD2 REMARK 620 2 GLU B 221 OE1 86.7 REMARK 620 3 HIS B 246 NE2 167.4 93.3 REMARK 620 4 HOH B 411 O 83.2 124.8 86.5 REMARK 620 5 HOH B 630 O 90.7 116.0 100.5 118.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OQY RELATED DB: PDB REMARK 900 THE SAME PROTEIN CRYSTALLIZED IN DIFFERENT SPACE GROUP REMARK 900 RELATED ID: 3ES7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MG AND L-MALATE REMARK 900 RELATED ID: 3ES8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MG AND L-MALATE, DIFFERENT SPACE REMARK 900 GROUP REMARK 900 RELATED ID: NYSGXRC-9375A RELATED DB: TARGETDB DBREF 3FYY A 1 391 UNP Q8EMJ9 Q8EMJ9_OCEIH 1 391 DBREF 3FYY B 1 391 UNP Q8EMJ9 Q8EMJ9_OCEIH 1 391 SEQRES 1 A 391 MET LYS ILE THR ASP LEU GLU LEU HIS ALA VAL GLY ILE SEQRES 2 A 391 PRO ARG HIS THR GLY PHE VAL ASN LYS HIS VAL ILE VAL SEQRES 3 A 391 LYS ILE HIS THR ASP GLU GLY LEU THR GLY ILE GLY GLU SEQRES 4 A 391 MET SER ASP PHE SER HIS LEU PRO LEU TYR SER VAL ASP SEQRES 5 A 391 LEU HIS ASP LEU LYS GLN GLY LEU LEU SER ILE LEU LEU SEQRES 6 A 391 GLY GLN ASN PRO PHE ASP LEU MET LYS ILE ASN LYS GLU SEQRES 7 A 391 LEU THR ASP ASN PHE PRO GLU THR MET TYR TYR TYR GLU SEQRES 8 A 391 LYS GLY SER PHE ILE ARG ASN GLY ILE ASP ASN ALA LEU SEQRES 9 A 391 HIS ASP LEU CYS ALA LYS TYR LEU ASP ILE SER VAL SER SEQRES 10 A 391 ASP PHE LEU GLY GLY ARG VAL LYS GLU LYS ILE LYS VAL SEQRES 11 A 391 CYS TYR PRO ILE PHE ARG HIS ARG PHE SER GLU GLU VAL SEQRES 12 A 391 GLU SER ASN LEU ASP VAL VAL ARG GLN LYS LEU GLU GLN SEQRES 13 A 391 GLY PHE ASP VAL PHE ARG LEU TYR VAL GLY LYS ASN LEU SEQRES 14 A 391 ASP ALA ASP GLU GLU PHE LEU SER ARG VAL LYS GLU GLU SEQRES 15 A 391 PHE GLY SER ARG VAL ARG ILE LYS SER TYR ASP PHE SER SEQRES 16 A 391 HIS LEU LEU ASN TRP LYS ASP ALA HIS ARG ALA ILE LYS SEQRES 17 A 391 ARG LEU THR LYS TYR ASP LEU GLY LEU GLU MET ILE GLU SEQRES 18 A 391 SER PRO ALA PRO ARG ASN ASP PHE ASP GLY LEU TYR GLN SEQRES 19 A 391 LEU ARG LEU LYS THR ASP TYR PRO ILE SER GLU HIS VAL SEQRES 20 A 391 TRP SER PHE LYS GLN GLN GLN GLU MET ILE LYS LYS ASP SEQRES 21 A 391 ALA ILE ASP ILE PHE ASN ILE SER PRO VAL PHE ILE GLY SEQRES 22 A 391 GLY LEU THR SER ALA LYS LYS ALA ALA TYR ALA ALA GLU SEQRES 23 A 391 VAL ALA SER LYS ASP VAL VAL LEU GLY THR THR GLN GLU SEQRES 24 A 391 LEU SER VAL GLY THR ALA ALA MET ALA HIS LEU GLY CYS SEQRES 25 A 391 SER LEU THR ASN ILE ASN HIS THR SER ASP PRO THR GLY SEQRES 26 A 391 PRO GLU LEU TYR VAL GLY ASP VAL VAL LYS ASN ARG VAL SEQRES 27 A 391 THR TYR LYS ASP GLY TYR LEU TYR ALA PRO ASP ARG SER SEQRES 28 A 391 VAL LYS GLY LEU GLY ILE GLU LEU ASP GLU SER LEU LEU SEQRES 29 A 391 ALA LYS TYR GLN VAL PRO ASP LEU SER TRP ASP ASN VAL SEQRES 30 A 391 THR VAL HIS GLN LEU GLN ASP ARG THR ALA ASP THR LYS SEQRES 31 A 391 SER SEQRES 1 B 391 MET LYS ILE THR ASP LEU GLU LEU HIS ALA VAL GLY ILE SEQRES 2 B 391 PRO ARG HIS THR GLY PHE VAL ASN LYS HIS VAL ILE VAL SEQRES 3 B 391 LYS ILE HIS THR ASP GLU GLY LEU THR GLY ILE GLY GLU SEQRES 4 B 391 MET SER ASP PHE SER HIS LEU PRO LEU TYR SER VAL ASP SEQRES 5 B 391 LEU HIS ASP LEU LYS GLN GLY LEU LEU SER ILE LEU LEU SEQRES 6 B 391 GLY GLN ASN PRO PHE ASP LEU MET LYS ILE ASN LYS GLU SEQRES 7 B 391 LEU THR ASP ASN PHE PRO GLU THR MET TYR TYR TYR GLU SEQRES 8 B 391 LYS GLY SER PHE ILE ARG ASN GLY ILE ASP ASN ALA LEU SEQRES 9 B 391 HIS ASP LEU CYS ALA LYS TYR LEU ASP ILE SER VAL SER SEQRES 10 B 391 ASP PHE LEU GLY GLY ARG VAL LYS GLU LYS ILE LYS VAL SEQRES 11 B 391 CYS TYR PRO ILE PHE ARG HIS ARG PHE SER GLU GLU VAL SEQRES 12 B 391 GLU SER ASN LEU ASP VAL VAL ARG GLN LYS LEU GLU GLN SEQRES 13 B 391 GLY PHE ASP VAL PHE ARG LEU TYR VAL GLY LYS ASN LEU SEQRES 14 B 391 ASP ALA ASP GLU GLU PHE LEU SER ARG VAL LYS GLU GLU SEQRES 15 B 391 PHE GLY SER ARG VAL ARG ILE LYS SER TYR ASP PHE SER SEQRES 16 B 391 HIS LEU LEU ASN TRP LYS ASP ALA HIS ARG ALA ILE LYS SEQRES 17 B 391 ARG LEU THR LYS TYR ASP LEU GLY LEU GLU MET ILE GLU SEQRES 18 B 391 SER PRO ALA PRO ARG ASN ASP PHE ASP GLY LEU TYR GLN SEQRES 19 B 391 LEU ARG LEU LYS THR ASP TYR PRO ILE SER GLU HIS VAL SEQRES 20 B 391 TRP SER PHE LYS GLN GLN GLN GLU MET ILE LYS LYS ASP SEQRES 21 B 391 ALA ILE ASP ILE PHE ASN ILE SER PRO VAL PHE ILE GLY SEQRES 22 B 391 GLY LEU THR SER ALA LYS LYS ALA ALA TYR ALA ALA GLU SEQRES 23 B 391 VAL ALA SER LYS ASP VAL VAL LEU GLY THR THR GLN GLU SEQRES 24 B 391 LEU SER VAL GLY THR ALA ALA MET ALA HIS LEU GLY CYS SEQRES 25 B 391 SER LEU THR ASN ILE ASN HIS THR SER ASP PRO THR GLY SEQRES 26 B 391 PRO GLU LEU TYR VAL GLY ASP VAL VAL LYS ASN ARG VAL SEQRES 27 B 391 THR TYR LYS ASP GLY TYR LEU TYR ALA PRO ASP ARG SER SEQRES 28 B 391 VAL LYS GLY LEU GLY ILE GLU LEU ASP GLU SER LEU LEU SEQRES 29 B 391 ALA LYS TYR GLN VAL PRO ASP LEU SER TRP ASP ASN VAL SEQRES 30 B 391 THR VAL HIS GLN LEU GLN ASP ARG THR ALA ASP THR LYS SEQRES 31 B 391 SER HET MG A 401 1 HET MG A 402 1 HET MG B 401 1 HET MG B 402 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 4(MG 2+) FORMUL 7 HOH *578(H2 O) HELIX 1 1 ASP A 52 LEU A 65 1 14 HELIX 2 2 ASP A 71 PHE A 83 1 13 HELIX 3 3 GLU A 91 ASP A 113 1 23 HELIX 4 4 SER A 115 LEU A 120 1 6 HELIX 5 5 PHE A 139 GLU A 141 5 3 HELIX 6 6 GLU A 142 GLN A 156 1 15 HELIX 7 7 ASN A 168 GLY A 184 1 17 HELIX 8 8 ASN A 199 THR A 211 1 13 HELIX 9 9 ASP A 228 THR A 239 1 12 HELIX 10 10 SER A 249 LYS A 259 1 11 HELIX 11 11 SER A 268 GLY A 273 1 6 HELIX 12 12 GLY A 274 ALA A 288 1 15 HELIX 13 13 LEU A 300 CYS A 312 1 13 HELIX 14 14 THR A 324 TYR A 329 5 6 HELIX 15 15 ASP A 360 TYR A 367 1 8 HELIX 16 16 ASP B 52 LEU B 65 1 14 HELIX 17 17 ASP B 71 PHE B 83 1 13 HELIX 18 18 GLU B 91 ASP B 113 1 23 HELIX 19 19 SER B 115 LEU B 120 1 6 HELIX 20 20 PHE B 139 GLU B 141 5 3 HELIX 21 21 GLU B 142 GLN B 156 1 15 HELIX 22 22 ASN B 168 GLY B 184 1 17 HELIX 23 23 SER B 185 VAL B 187 5 3 HELIX 24 24 ASN B 199 THR B 211 1 13 HELIX 25 25 ASP B 228 THR B 239 1 12 HELIX 26 26 SER B 249 LYS B 259 1 11 HELIX 27 27 SER B 268 GLY B 273 1 6 HELIX 28 28 GLY B 274 ALA B 288 1 15 HELIX 29 29 LEU B 300 CYS B 312 1 13 HELIX 30 30 THR B 324 TYR B 329 5 6 HELIX 31 31 ASP B 360 TYR B 367 1 8 SHEET 1 A 3 ILE A 3 PRO A 14 0 SHEET 2 A 3 VAL A 20 THR A 30 -1 O ILE A 25 N HIS A 9 SHEET 3 A 3 THR A 35 MET A 40 -1 O MET A 40 N VAL A 24 SHEET 1 B 3 LYS A 127 LYS A 129 0 SHEET 2 B 3 TYR A 344 TYR A 346 -1 O LEU A 345 N ILE A 128 SHEET 3 B 3 TYR A 340 LYS A 341 -1 N LYS A 341 O TYR A 344 SHEET 1 C 7 TYR A 132 ILE A 134 0 SHEET 2 C 7 VAL A 160 TYR A 164 1 O ARG A 162 N ILE A 134 SHEET 3 C 7 ARG A 188 ASP A 193 1 O ASP A 193 N LEU A 163 SHEET 4 C 7 MET A 219 GLU A 221 1 O GLU A 221 N TYR A 192 SHEET 5 C 7 ILE A 243 HIS A 246 1 O SER A 244 N ILE A 220 SHEET 6 C 7 ILE A 264 ILE A 267 1 O ASN A 266 N GLU A 245 SHEET 7 C 7 ASP A 291 LEU A 294 1 O ASP A 291 N PHE A 265 SHEET 1 D 3 ILE B 3 PRO B 14 0 SHEET 2 D 3 VAL B 20 THR B 30 -1 O ILE B 25 N HIS B 9 SHEET 3 D 3 THR B 35 MET B 40 -1 O MET B 40 N VAL B 24 SHEET 1 E 2 LYS B 127 LYS B 129 0 SHEET 2 E 2 TYR B 344 TYR B 346 -1 O LEU B 345 N ILE B 128 SHEET 1 F 7 TYR B 132 ILE B 134 0 SHEET 2 F 7 VAL B 160 TYR B 164 1 O ARG B 162 N ILE B 134 SHEET 3 F 7 ARG B 188 ASP B 193 1 O SER B 191 N LEU B 163 SHEET 4 F 7 MET B 219 GLU B 221 1 O GLU B 221 N TYR B 192 SHEET 5 F 7 ILE B 243 HIS B 246 1 O SER B 244 N ILE B 220 SHEET 6 F 7 ILE B 264 ILE B 267 1 O ASN B 266 N GLU B 245 SHEET 7 F 7 ASP B 291 LEU B 294 1 O ASP B 291 N PHE B 265 LINK OD1 ASP A 42 MG MG A 402 1555 1555 2.09 LINK NE2 HIS A 45 MG MG A 402 1555 1555 2.26 LINK OD2 ASP A 193 MG MG A 401 1555 1555 2.09 LINK OE1 GLU A 221 MG MG A 401 1555 1555 1.98 LINK NE2 HIS A 246 MG MG A 401 1555 1555 2.00 LINK O THR A 297 MG MG A 402 1555 1555 2.26 LINK OG1 THR A 297 MG MG A 402 1555 1555 2.13 LINK MG MG A 401 O HOH A 557 1555 1555 2.13 LINK MG MG A 401 O HOH A 565 1555 1555 2.10 LINK MG MG A 402 O HOH A 631 1555 1555 2.12 LINK MG MG A 402 O HOH A 632 1555 1555 2.12 LINK OD1 ASP B 42 MG MG B 402 1555 1555 1.97 LINK NE2 HIS B 45 MG MG B 402 1555 1555 2.39 LINK OD2 ASP B 193 MG MG B 401 1555 1555 2.14 LINK OE1 GLU B 221 MG MG B 401 1555 1555 1.89 LINK NE2 HIS B 246 MG MG B 401 1555 1555 2.08 LINK O THR B 297 MG MG B 402 1555 1555 2.28 LINK OG1 THR B 297 MG MG B 402 1555 1555 2.23 LINK MG MG B 401 O HOH B 411 1555 1555 2.08 LINK MG MG B 401 O HOH B 630 1555 1555 1.88 LINK MG MG B 402 O HOH B 633 1555 1555 2.77 LINK MG MG B 402 O HOH B 634 1555 1555 1.95 CISPEP 1 LEU A 46 PRO A 47 0 0.22 CISPEP 2 LEU B 46 PRO B 47 0 0.15 SITE 1 AC1 5 ASP A 193 GLU A 221 HIS A 246 HOH A 557 SITE 2 AC1 5 HOH A 565 SITE 1 AC2 5 ASP A 42 HIS A 45 THR A 297 HOH A 631 SITE 2 AC2 5 HOH A 632 SITE 1 AC3 5 ASP B 193 GLU B 221 HIS B 246 HOH B 411 SITE 2 AC3 5 HOH B 630 SITE 1 AC4 5 ASP B 42 HIS B 45 THR B 297 HOH B 633 SITE 2 AC4 5 HOH B 634 CRYST1 121.162 121.162 120.876 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008253 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008273 0.00000