HEADER PROTEIN BINDING 25-JAN-09 3FZE TITLE STRUCTURE OF THE 'MINIMAL SCAFFOLD' (MS) DOMAIN OF STE5 THAT TITLE 2 COCATALYZES FUS3 PHOSPHORYLATION BY STE7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN STE5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 593-786; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NUL3, STE5, YD8557.12, YDR103W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS CELLS (NOVAGEN) KEYWDS ALPHA/BETA/ALPHA, VWA-LIKE FOLD (SCOP), CYTOPLASM, PHEROMONE KEYWDS 2 RESPONSE, PHOSPHOPROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.C.GOOD,G.TANG,J.SINGLETON,A.REMENYI,W.A.LIM REVDAT 3 21-FEB-24 3FZE 1 SEQADV REVDAT 2 23-AUG-17 3FZE 1 REMARK REVDAT 1 31-MAR-09 3FZE 0 JRNL AUTH M.GOOD,G.TANG,J.SINGLETON,A.REMENYI,W.A.LIM JRNL TITL THE STE5 SCAFFOLD DIRECTS MATING SIGNALING BY CATALYTICALLY JRNL TITL 2 UNLOCKING THE FUS3 MAP KINASE FOR ACTIVATION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 136 1085 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19303851 JRNL DOI 10.1016/J.CELL.2009.01.049 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 24227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.1667 - 3.3268 0.66 2043 109 0.1884 0.1873 REMARK 3 2 3.3268 - 2.6420 0.99 2960 152 0.1982 0.2382 REMARK 3 3 2.6420 - 2.3084 0.97 2861 146 0.2014 0.2556 REMARK 3 4 2.3084 - 2.0975 0.81 2368 130 0.2095 0.2428 REMARK 3 5 2.0975 - 1.9473 0.93 2725 137 0.2169 0.2312 REMARK 3 6 1.9473 - 1.8325 0.83 2376 144 0.2779 0.3179 REMARK 3 7 1.8325 - 1.7408 0.92 2640 157 0.2011 0.2154 REMARK 3 8 1.7408 - 1.6650 0.90 2595 132 0.2146 0.2498 REMARK 3 9 1.6650 - 1.6010 0.83 2435 117 0.2176 0.2766 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 64.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 12.2571 10.9675 11.0925 REMARK 3 T TENSOR REMARK 3 T11: 0.0518 T22: 0.1182 REMARK 3 T33: 0.0927 T12: 0.0273 REMARK 3 T13: -0.0031 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.8206 L22: 1.4543 REMARK 3 L33: 1.9614 L12: -0.1174 REMARK 3 L13: 0.4430 L23: -0.6455 REMARK 3 S TENSOR REMARK 3 S11: -0.1275 S12: -0.0399 S13: 0.0849 REMARK 3 S21: 0.1819 S22: 0.1698 S23: 0.0764 REMARK 3 S31: -0.1019 S32: -0.3003 S33: -0.0668 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-06; 09-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.3.1; 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587; 1.00556, 1.00949, REMARK 200 1.04796 REMARK 200 MONOCHROMATOR : KHOZU DOUBLE FLAT CRYSTAL; KHOZU REMARK 200 DOUBLE FLAT CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q315R; ADSC QUANTUM REMARK 200 Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25696 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31100 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MIXED 10MG/ML PROTEIN 1:1 (VOL:VOL) REMARK 280 WITH SOLUTION OF 20% PEG3350, 0.1M CITRATE PH 5.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.40150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.54550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.78450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.54550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.40150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.78450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 730 REMARK 465 ARG A 731 REMARK 465 ARG A 732 REMARK 465 PRO A 733 REMARK 465 ASP A 749 REMARK 465 ASP A 781 REMARK 465 ASP A 782 REMARK 465 GLU A 783 REMARK 465 GLU A 784 REMARK 465 ASP A 785 REMARK 465 ASN A 786 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 622 CG CD CE NZ REMARK 470 ARG A 723 CG CD NE CZ NH1 NH2 REMARK 470 SER A 727 OG REMARK 470 ASN A 734 CG OD1 ND2 REMARK 470 SER A 748 OG REMARK 470 GLU A 777 CG CD OE1 OE2 REMARK 470 ASP A 779 CG OD1 OD2 REMARK 470 ASP A 780 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 679 140.30 -171.39 REMARK 500 ASN A 696 162.68 78.94 REMARK 500 ASN A 696 162.68 78.93 REMARK 500 ARG A 723 -67.70 -7.75 REMARK 500 SER A 727 75.00 -158.87 REMARK 500 ASP A 752 -102.12 -60.76 REMARK 500 REMARK 500 REMARK: NULL DBREF 3FZE A 593 786 UNP P32917 STE5_YEAST 593 786 SEQADV 3FZE GLY A 591 UNP P32917 EXPRESSION TAG SEQADV 3FZE SER A 592 UNP P32917 EXPRESSION TAG SEQRES 1 A 196 GLY SER LEU THR THR ILE SER SER ILE LEU SER LEU LYS SEQRES 2 A 196 ARG GLU LYS PRO ASP ASN LEU ALA ILE ILE LEU GLN ILE SEQRES 3 A 196 ASP PHE THR LYS LEU LYS GLU GLU ASP SER LEU ILE VAL SEQRES 4 A 196 VAL TYR ASN SER LEU LYS ALA LEU THR ILE LYS PHE ALA SEQRES 5 A 196 ARG LEU GLN PHE CYS PHE VAL ASP ARG ASN ASN TYR VAL SEQRES 6 A 196 LEU ASP TYR GLY SER VAL LEU HIS LYS ILE ASP SER LEU SEQRES 7 A 196 ASP SER ILE SER ASN LEU LYS SER LYS SER SER SER THR SEQRES 8 A 196 GLN PHE SER PRO ILE TRP LEU LYS ASN THR LEU TYR PRO SEQRES 9 A 196 GLU ASN ILE HIS GLU HIS LEU GLY ILE VAL ALA VAL SER SEQRES 10 A 196 ASN SER ASN MET GLU ALA LYS LYS SER ILE LEU PHE GLN SEQRES 11 A 196 ASP TYR ARG CYS PHE THR SER PHE GLY ARG ARG ARG PRO SEQRES 12 A 196 ASN GLU LEU LYS ILE LYS VAL GLY TYR LEU ASN VAL ASP SEQRES 13 A 196 TYR SER ASP LYS ILE ASP GLU LEU VAL GLU ALA SER SER SEQRES 14 A 196 TRP THR PHE VAL LEU GLU THR LEU CYS TYR SER PHE GLY SEQRES 15 A 196 LEU SER PHE ASP GLU HIS ASP ASP ASP ASP GLU GLU ASP SEQRES 16 A 196 ASN FORMUL 2 HOH *122(H2 O) HELIX 1 1 GLY A 591 GLU A 605 1 15 HELIX 2 2 ASP A 617 LEU A 621 5 5 HELIX 3 3 GLU A 624 PHE A 641 1 18 HELIX 4 4 VAL A 661 ILE A 665 1 5 HELIX 5 5 SER A 667 ASN A 673 1 7 HELIX 6 6 LEU A 674 LYS A 677 5 4 HELIX 7 7 SER A 684 TYR A 693 1 10 HELIX 8 8 SER A 716 GLN A 720 5 5 HELIX 9 9 TYR A 722 THR A 726 5 5 HELIX 10 10 SER A 759 PHE A 771 1 13 SHEET 1 A 6 VAL A 655 SER A 660 0 SHEET 2 A 6 GLN A 645 ASP A 650 -1 N PHE A 648 O LEU A 656 SHEET 3 A 6 ASN A 609 ILE A 616 1 N ILE A 612 O GLN A 645 SHEET 4 A 6 LEU A 701 SER A 707 1 O VAL A 704 N ILE A 613 SHEET 5 A 6 GLU A 735 VAL A 740 1 O LEU A 736 N ALA A 705 SHEET 6 A 6 VAL A 755 ALA A 757 1 O VAL A 755 N LYS A 739 CISPEP 1 PHE A 728 GLY A 729 0 -5.01 CRYST1 46.803 63.569 69.091 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021366 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014474 0.00000