HEADER HYDROLASE 27-JAN-09 3FZZ TITLE STRUCTURE OF GRC COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRANZYME C; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYTOTOXIC CELL PROTEASE 2, CCP2, B10; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HYDROLASE, CYTOLYSIS, PROTEASE, SERINE PROTEASE, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR A.M.BUCKLE,D.KAISERMAN,J.C.WHISSTOCK REVDAT 4 01-NOV-23 3FZZ 1 REMARK REVDAT 3 13-JUL-11 3FZZ 1 VERSN REVDAT 2 12-MAY-09 3FZZ 1 JRNL REVDAT 1 17-MAR-09 3FZZ 0 JRNL AUTH D.KAISERMAN,A.M.BUCKLE,P.VAN DAMME,J.A.IRVING,R.H.P.LAW, JRNL AUTH 2 A.Y.MATTHEWS,T.BASHTANNYK-PUHALOVICH,C.LANGENDORF, JRNL AUTH 3 P.THOMPSON,J.VANDEKERCKHOVE,K.GEVAERT,J.C.WHISSTOCK,P.I.BIRD JRNL TITL STRUCTURE OF GRANZYME C REVEALS AN UNUSUAL MECHANISM OF JRNL TITL 2 PROTEASE AUTOINHIBITION JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 5587 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19299505 JRNL DOI 10.1073/PNAS.0811968106 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1015 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1460 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.4430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3374 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.73000 REMARK 3 B22 (A**2) : 4.73000 REMARK 3 B33 (A**2) : -7.09000 REMARK 3 B12 (A**2) : 2.36000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.420 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.276 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.228 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.342 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3484 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4744 ; 1.456 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 7.033 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;33.092 ;23.577 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 527 ;17.031 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.787 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2646 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2258 ; 1.340 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3608 ; 2.404 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1226 ; 4.213 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1136 ; 5.934 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 21 A 40 1 REMARK 3 1 B 21 B 40 1 REMARK 3 2 A 45 A 246 1 REMARK 3 2 B 45 B 246 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1647 ; 0.020 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 1647 ; 0.050 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2190 -19.8970 -6.8330 REMARK 3 T TENSOR REMARK 3 T11: -0.1917 T22: -0.1735 REMARK 3 T33: -0.0282 T12: 0.0411 REMARK 3 T13: 0.0483 T23: -0.0742 REMARK 3 L TENSOR REMARK 3 L11: 3.1428 L22: 3.3983 REMARK 3 L33: 8.7032 L12: -0.0597 REMARK 3 L13: 0.2781 L23: 1.2327 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: -0.0623 S13: -0.0914 REMARK 3 S21: 0.1752 S22: -0.0140 S23: 0.0045 REMARK 3 S31: 0.4968 S32: 0.3868 S33: 0.0616 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1250 -43.9740 -27.5670 REMARK 3 T TENSOR REMARK 3 T11: -0.1553 T22: -0.2505 REMARK 3 T33: -0.0236 T12: 0.0261 REMARK 3 T13: 0.0590 T23: -0.0901 REMARK 3 L TENSOR REMARK 3 L11: 3.2495 L22: 3.6568 REMARK 3 L33: 8.9751 L12: -0.5350 REMARK 3 L13: -1.2573 L23: 0.0517 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: 0.0376 S13: -0.0348 REMARK 3 S21: -0.1150 S22: -0.1020 S23: 0.0103 REMARK 3 S31: -0.5375 S32: -0.2141 S33: 0.0623 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3FZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20641 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 61.911 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4840 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1A1U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.25G/ML PEG REMARK 280 3350, 0.1M SODIUM CACODYLATE. CRYSTALS WERE GROWN BY MIXING 2 REMARK 280 MICRO-L OF RESERVOIR SOLUTION WITH 2 MICRO-L OF PROTEIN SOLUTION REMARK 280 (20MG/ML IN 50MM HEPES PH 6.8, 200MM NACL), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K, PH 6.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.89867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 137.79733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 103.34800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 172.24667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.44933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 136 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 154 CG OD1 OD2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 LYS A 159 CE NZ REMARK 470 LYS A 170 CD CE NZ REMARK 470 GLN A 179 CG CD OE1 NE2 REMARK 470 SER A 180 OG REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 THR A 223 OG1 CG2 REMARK 470 ASP A 224 CG OD1 OD2 REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS B 42 CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 133 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 136 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 154 CG OD1 OD2 REMARK 470 LYS B 159 CE NZ REMARK 470 LYS B 170 CD CE NZ REMARK 470 GLN B 179 CG CD OE1 NE2 REMARK 470 SER B 180 OG REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 LYS B 211 CD CE NZ REMARK 470 ASP B 224 CG OD1 OD2 REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 LYS B 246 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 78 -56.41 -123.40 REMARK 500 ARG A 133 -35.45 -33.41 REMARK 500 ALA A 135 104.06 -43.16 REMARK 500 GLN A 179 120.46 -17.01 REMARK 500 GLU A 201 -74.99 73.34 REMARK 500 LYS A 211 54.19 32.36 REMARK 500 ALA A 214 88.14 -68.64 REMARK 500 SER A 219 -64.72 -120.29 REMARK 500 THR A 223 -60.42 -24.56 REMARK 500 SER A 226 -28.66 58.88 REMARK 500 HIS B 78 -56.32 -121.35 REMARK 500 ARG B 133 -36.04 -30.76 REMARK 500 ALA B 135 103.59 -41.65 REMARK 500 GLN B 179 120.51 -17.03 REMARK 500 GLU B 201 -76.11 73.16 REMARK 500 LYS B 211 52.95 33.06 REMARK 500 SER B 219 -64.05 -122.43 REMARK 500 THR B 223 -59.26 -25.94 REMARK 500 SER B 226 -28.80 59.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 200 GLU B 201 -149.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 7 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN IS BASED ON REFERENCE 3 OF UNIPROTKB/ REMARK 999 SWISS-PROT P08882 (GRAC_MOUSE). DBREF 3FZZ A 21 247 UNP P08882 GRAC_MOUSE 21 247 DBREF 3FZZ B 21 247 UNP P08882 GRAC_MOUSE 21 247 SEQADV 3FZZ ARG A 69 UNP P08882 SER 69 SEE REMARK 999 SEQADV 3FZZ ARG B 69 UNP P08882 SER 69 SEE REMARK 999 SEQRES 1 A 227 ILE ILE GLY GLY ASN GLU ILE SER PRO HIS SER ARG PRO SEQRES 2 A 227 TYR MET ALA TYR TYR GLU PHE LEU LYS VAL GLY GLY LYS SEQRES 3 A 227 LYS MET PHE CYS GLY GLY PHE LEU VAL ARG ASP LYS PHE SEQRES 4 A 227 VAL LEU THR ALA ALA HIS CYS LYS GLY ARG SER MET THR SEQRES 5 A 227 VAL THR LEU GLY ALA HIS ASN ILE LYS ALA LYS GLU GLU SEQRES 6 A 227 THR GLN GLN ILE ILE PRO VAL ALA LYS ALA ILE PRO HIS SEQRES 7 A 227 PRO ASP TYR ASN PRO ASP ASP ARG SER ASN ASP ILE MET SEQRES 8 A 227 LEU LEU LYS LEU VAL ARG ASN ALA LYS ARG THR ARG ALA SEQRES 9 A 227 VAL ARG PRO LEU ASN LEU PRO ARG ARG ASN ALA HIS VAL SEQRES 10 A 227 LYS PRO GLY ASP GLU CYS TYR VAL ALA GLY TRP GLY LYS SEQRES 11 A 227 VAL THR PRO ASP GLY GLU PHE PRO LYS THR LEU HIS GLU SEQRES 12 A 227 VAL LYS LEU THR VAL GLN LYS ASP GLN VAL CYS GLU SER SEQRES 13 A 227 GLN PHE GLN SER SER TYR ASN ARG ALA ASN GLU ILE CYS SEQRES 14 A 227 VAL GLY ASP SER LYS ILE LYS GLY ALA SER PHE GLU GLU SEQRES 15 A 227 ASP SER GLY GLY PRO LEU VAL CYS LYS ARG ALA ALA ALA SEQRES 16 A 227 GLY ILE VAL SER TYR GLY GLN THR ASP GLY SER ALA PRO SEQRES 17 A 227 GLN VAL PHE THR ARG VAL LEU SER PHE VAL SER TRP ILE SEQRES 18 A 227 LYS LYS THR MET LYS HIS SEQRES 1 B 227 ILE ILE GLY GLY ASN GLU ILE SER PRO HIS SER ARG PRO SEQRES 2 B 227 TYR MET ALA TYR TYR GLU PHE LEU LYS VAL GLY GLY LYS SEQRES 3 B 227 LYS MET PHE CYS GLY GLY PHE LEU VAL ARG ASP LYS PHE SEQRES 4 B 227 VAL LEU THR ALA ALA HIS CYS LYS GLY ARG SER MET THR SEQRES 5 B 227 VAL THR LEU GLY ALA HIS ASN ILE LYS ALA LYS GLU GLU SEQRES 6 B 227 THR GLN GLN ILE ILE PRO VAL ALA LYS ALA ILE PRO HIS SEQRES 7 B 227 PRO ASP TYR ASN PRO ASP ASP ARG SER ASN ASP ILE MET SEQRES 8 B 227 LEU LEU LYS LEU VAL ARG ASN ALA LYS ARG THR ARG ALA SEQRES 9 B 227 VAL ARG PRO LEU ASN LEU PRO ARG ARG ASN ALA HIS VAL SEQRES 10 B 227 LYS PRO GLY ASP GLU CYS TYR VAL ALA GLY TRP GLY LYS SEQRES 11 B 227 VAL THR PRO ASP GLY GLU PHE PRO LYS THR LEU HIS GLU SEQRES 12 B 227 VAL LYS LEU THR VAL GLN LYS ASP GLN VAL CYS GLU SER SEQRES 13 B 227 GLN PHE GLN SER SER TYR ASN ARG ALA ASN GLU ILE CYS SEQRES 14 B 227 VAL GLY ASP SER LYS ILE LYS GLY ALA SER PHE GLU GLU SEQRES 15 B 227 ASP SER GLY GLY PRO LEU VAL CYS LYS ARG ALA ALA ALA SEQRES 16 B 227 GLY ILE VAL SER TYR GLY GLN THR ASP GLY SER ALA PRO SEQRES 17 B 227 GLN VAL PHE THR ARG VAL LEU SER PHE VAL SER TRP ILE SEQRES 18 B 227 LYS LYS THR MET LYS HIS HET SO4 A 2 5 HET SO4 A 4 5 HET SO4 A 6 5 HET SO4 B 1 5 HET SO4 B 3 5 HET SO4 B 5 5 HET SO4 B 7 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 7(O4 S 2-) FORMUL 10 HOH *27(H2 O) HELIX 1 1 LYS A 170 GLN A 179 1 10 HELIX 2 2 PHE A 237 LYS A 246 1 10 HELIX 3 3 LYS B 170 GLN B 179 1 10 HELIX 4 4 PHE B 237 LYS B 246 1 10 SHEET 1 A 7 ASN A 25 GLU A 26 0 SHEET 2 A 7 HIS A 162 THR A 167 -1 O GLU A 163 N ASN A 25 SHEET 3 A 7 GLU A 142 GLY A 147 -1 N CYS A 143 O LEU A 166 SHEET 4 A 7 PRO A 207 CYS A 210 -1 O VAL A 209 N TYR A 144 SHEET 5 A 7 ALA A 213 TYR A 220 -1 O ALA A 213 N CYS A 210 SHEET 6 A 7 GLN A 229 ARG A 233 -1 O VAL A 230 N TYR A 220 SHEET 7 A 7 GLU A 187 VAL A 190 -1 N ILE A 188 O PHE A 231 SHEET 1 B 7 MET A 35 LEU A 41 0 SHEET 2 B 7 LYS A 47 ARG A 56 -1 O MET A 48 N PHE A 40 SHEET 3 B 7 PHE A 59 THR A 62 -1 O LEU A 61 N PHE A 53 SHEET 4 B 7 MET A 111 LEU A 115 -1 O LEU A 113 N VAL A 60 SHEET 5 B 7 GLN A 88 PRO A 97 -1 N ALA A 93 O LYS A 114 SHEET 6 B 7 ARG A 69 LEU A 75 -1 N VAL A 73 O ILE A 90 SHEET 7 B 7 MET A 35 LEU A 41 -1 N GLU A 39 O THR A 72 SHEET 1 C 7 ASN B 25 GLU B 26 0 SHEET 2 C 7 HIS B 162 THR B 167 -1 O GLU B 163 N ASN B 25 SHEET 3 C 7 GLU B 142 GLY B 147 -1 N CYS B 143 O LEU B 166 SHEET 4 C 7 PRO B 207 CYS B 210 -1 O VAL B 209 N TYR B 144 SHEET 5 C 7 ALA B 213 TYR B 220 -1 O ALA B 213 N CYS B 210 SHEET 6 C 7 GLN B 229 ARG B 233 -1 O VAL B 230 N TYR B 220 SHEET 7 C 7 GLU B 187 VAL B 190 -1 N ILE B 188 O PHE B 231 SHEET 1 D 7 MET B 35 LEU B 41 0 SHEET 2 D 7 LYS B 47 ARG B 56 -1 O MET B 48 N PHE B 40 SHEET 3 D 7 PHE B 59 THR B 62 -1 O LEU B 61 N PHE B 53 SHEET 4 D 7 MET B 111 LEU B 115 -1 O LEU B 113 N VAL B 60 SHEET 5 D 7 GLN B 88 PRO B 97 -1 N ILE B 96 O LEU B 112 SHEET 6 D 7 ARG B 69 LEU B 75 -1 N VAL B 73 O ILE B 90 SHEET 7 D 7 MET B 35 LEU B 41 -1 N LEU B 41 O ARG B 69 SSBOND 1 CYS A 50 CYS A 66 1555 1555 2.04 SSBOND 2 CYS A 143 CYS A 210 1555 1555 2.04 SSBOND 3 CYS A 174 CYS A 189 1555 1555 2.08 SSBOND 4 CYS B 50 CYS B 66 1555 1555 2.04 SSBOND 5 CYS B 143 CYS B 210 1555 1555 2.04 SSBOND 6 CYS B 174 CYS B 189 1555 1555 2.07 CISPEP 1 ASP A 224 GLY A 225 0 -0.34 CISPEP 2 ALA A 227 PRO A 228 0 -8.47 CISPEP 3 VAL B 43 GLY B 44 0 -7.97 CISPEP 4 ASP B 224 GLY B 225 0 0.86 CISPEP 5 ALA B 227 PRO B 228 0 -7.67 SITE 1 AC1 2 THR A 122 ARG A 123 SITE 1 AC2 3 PRO A 158 LYS A 159 THR A 160 SITE 1 AC3 2 ARG A 132 ARG A 133 SITE 1 AC4 4 ARG A 132 ARG A 212 ARG B 132 ARG B 212 SITE 1 AC5 2 THR B 122 ARG B 123 SITE 1 AC6 3 PRO B 158 LYS B 159 THR B 160 SITE 1 AC7 2 ARG B 132 ARG B 133 CRYST1 71.488 71.488 206.696 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013988 0.008076 0.000000 0.00000 SCALE2 0.000000 0.016152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004838 0.00000