HEADER LIGASE 27-JAN-09 3G06 TITLE THE SALMONELLA VIRULENCE EFFECTOR SSPH2 FUNCTIONS AS A NOVEL E3 LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SSPH2 (LEUCINE-RICH REPEAT PROTEIN); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LRR + NEL DOMAIN, RESIDUES 166-783; COMPND 5 EC: 6.3.2.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 STRAIN: SALMONELLA LT2; SOURCE 5 GENE: SSPH2, STM2241; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF-DUET-1 KEYWDS E3 UBIQUITIN LIGASE, LEUCINE RICH REPEAT DOMAIN, TYPE THREE EFFECTOR, KEYWDS 2 SALMONELLA VIRULENCE FACTOR, SPI-2, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.M.QUEZADA,C.E.STEBBINS REVDAT 2 21-FEB-24 3G06 1 REMARK REVDAT 1 07-APR-09 3G06 0 JRNL AUTH C.M.QUEZADA,S.W.HICKS,J.E.GALAN,C.E.STEBBINS JRNL TITL A FAMILY OF SALMONELLA VIRULENCE FACTORS FUNCTIONS AS A JRNL TITL 2 DISTINCT CLASS OF AUTOREGULATED E3 UBIQUITIN LIGASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 4864 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19273841 JRNL DOI 10.1073/PNAS.0811058106 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0063 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 63141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3369 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4468 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.4480 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.5280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4663 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.850 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4753 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6468 ; 1.936 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 598 ; 7.277 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;38.898 ;24.378 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 822 ;16.067 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.021 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 757 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3548 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3008 ; 1.040 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4849 ; 1.876 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1745 ; 3.420 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1619 ; 5.595 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN TEH RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63141 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-10% PEG5K, 5% TACSIMATE, 0.1M HEPES REMARK 280 PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.52700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.44250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.44250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 210.79050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.44250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.44250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.26350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.44250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.44250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 210.79050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.44250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.44250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.26350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 140.52700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 162 REMARK 465 PRO A 163 REMARK 465 VAL A 164 REMARK 465 ASP A 165 REMARK 465 PRO A 166 REMARK 465 ALA A 167 REMARK 465 GLU A 168 REMARK 465 TYR A 169 REMARK 465 ASP A 170 REMARK 465 SER A 487 REMARK 465 ALA A 488 REMARK 465 PRO A 489 REMARK 465 ARG A 490 REMARK 465 ALA A 506 REMARK 465 ARG A 507 REMARK 465 GLU A 508 REMARK 465 GLY A 509 REMARK 465 GLU A 510 REMARK 465 PRO A 511 REMARK 465 ALA A 512 REMARK 465 PRO A 513 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 17 O HOH A 1012 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 325 CB CYS A 325 SG -0.148 REMARK 500 GLU A 581 CB GLU A 581 CG -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 VAL A 639 CB - CA - C ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG A 709 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 709 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 232 -154.88 -146.74 REMARK 500 LEU A 274 122.67 -39.45 REMARK 500 ASN A 292 -138.93 -115.73 REMARK 500 VAL A 309 26.37 -144.28 REMARK 500 ASN A 312 -157.85 -126.76 REMARK 500 ALA A 329 37.12 -157.91 REMARK 500 ASN A 332 -152.78 -117.32 REMARK 500 ASN A 352 -160.33 -122.02 REMARK 500 ALA A 369 44.34 -143.32 REMARK 500 ASN A 372 -154.33 -126.64 REMARK 500 ASN A 392 -155.85 -119.82 REMARK 500 ASN A 412 -161.09 -129.31 REMARK 500 ASN A 432 -158.72 -126.27 REMARK 500 ASP A 524 124.37 9.54 REMARK 500 ASN A 525 8.82 57.66 REMARK 500 SER A 579 -149.54 -153.71 REMARK 500 SER A 741 -141.86 -67.68 REMARK 500 LEU A 743 -0.49 178.10 REMARK 500 ASN A 746 103.20 -47.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 574 GLU A 575 133.94 REMARK 500 GLU A 575 ALA A 576 55.71 REMARK 500 SER A 741 GLY A 742 59.70 REMARK 500 REMARK 500 REMARK: NULL DBREF 3G06 A 166 783 UNP Q9RPH0 Q9RPH0_SALTY 166 783 SEQADV 3G06 GLY A 162 UNP Q9RPH0 EXPRESSION TAG SEQADV 3G06 PRO A 163 UNP Q9RPH0 EXPRESSION TAG SEQADV 3G06 VAL A 164 UNP Q9RPH0 EXPRESSION TAG SEQADV 3G06 ASP A 165 UNP Q9RPH0 EXPRESSION TAG SEQRES 1 A 622 GLY PRO VAL ASP PRO ALA GLU TYR ASP ALA VAL TRP SER SEQRES 2 A 622 ALA TRP ARG ARG ALA ALA PRO ALA GLU GLU SER ARG GLY SEQRES 3 A 622 ARG ALA ALA VAL VAL GLN LYS MET ARG ALA CYS LEU ASN SEQRES 4 A 622 ASN GLY ASN ALA VAL LEU ASN VAL GLY GLU SER GLY LEU SEQRES 5 A 622 THR THR LEU PRO ASP CYS LEU PRO ALA HIS ILE THR THR SEQRES 6 A 622 LEU VAL ILE PRO ASP ASN ASN LEU THR SER LEU PRO ALA SEQRES 7 A 622 LEU PRO PRO GLU LEU ARG THR LEU GLU VAL SER GLY ASN SEQRES 8 A 622 GLN LEU THR SER LEU PRO VAL LEU PRO PRO GLY LEU LEU SEQRES 9 A 622 GLU LEU SER ILE PHE SER ASN PRO LEU THR HIS LEU PRO SEQRES 10 A 622 ALA LEU PRO SER GLY LEU CYS LYS LEU TRP ILE PHE GLY SEQRES 11 A 622 ASN GLN LEU THR SER LEU PRO VAL LEU PRO PRO GLY LEU SEQRES 12 A 622 GLN GLU LEU SER VAL SER ASP ASN GLN LEU ALA SER LEU SEQRES 13 A 622 PRO ALA LEU PRO SER GLU LEU CYS LYS LEU TRP ALA TYR SEQRES 14 A 622 ASN ASN GLN LEU THR SER LEU PRO MET LEU PRO SER GLY SEQRES 15 A 622 LEU GLN GLU LEU SER VAL SER ASP ASN GLN LEU ALA SER SEQRES 16 A 622 LEU PRO THR LEU PRO SER GLU LEU TYR LYS LEU TRP ALA SEQRES 17 A 622 TYR ASN ASN ARG LEU THR SER LEU PRO ALA LEU PRO SER SEQRES 18 A 622 GLY LEU LYS GLU LEU ILE VAL SER GLY ASN ARG LEU THR SEQRES 19 A 622 SER LEU PRO VAL LEU PRO SER GLU LEU LYS GLU LEU MET SEQRES 20 A 622 VAL SER GLY ASN ARG LEU THR SER LEU PRO MET LEU PRO SEQRES 21 A 622 SER GLY LEU LEU SER LEU SER VAL TYR ARG ASN GLN LEU SEQRES 22 A 622 THR ARG LEU PRO GLU SER LEU ILE HIS LEU SER SER GLU SEQRES 23 A 622 THR THR VAL ASN LEU GLU GLY ASN PRO LEU SER GLU ARG SEQRES 24 A 622 THR LEU GLN ALA LEU ARG GLU ILE THR SER ALA PRO GLY SEQRES 25 A 622 TYR SER GLY PRO ILE ILE ARG PHE ASP MET ALA GLY ALA SEQRES 26 A 622 SER ALA PRO ARG GLU THR ARG ALA LEU HIS LEU ALA ALA SEQRES 27 A 622 ALA ASP TRP LEU VAL PRO ALA ARG GLU GLY GLU PRO ALA SEQRES 28 A 622 PRO ALA ASP ARG TRP HIS MET PHE GLY GLN GLU ASP ASN SEQRES 29 A 622 ALA ASP ALA PHE SER LEU PHE LEU ASP ARG LEU SER GLU SEQRES 30 A 622 THR GLU ASN PHE ILE LYS ASP ALA GLY PHE LYS ALA GLN SEQRES 31 A 622 ILE SER SER TRP LEU ALA GLN LEU ALA GLU ASP GLU ALA SEQRES 32 A 622 LEU ARG ALA ASN THR PHE ALA MET ALA THR GLU ALA THR SEQRES 33 A 622 SER SER CYS GLU ASP ARG VAL THR PHE PHE LEU HIS GLN SEQRES 34 A 622 MET LYS ASN VAL GLN LEU VAL HIS ASN ALA GLU LYS GLY SEQRES 35 A 622 GLN TYR ASP ASN ASP LEU ALA ALA LEU VAL ALA THR GLY SEQRES 36 A 622 ARG GLU MET PHE ARG LEU GLY LYS LEU GLU GLN ILE ALA SEQRES 37 A 622 ARG GLU LYS VAL ARG THR LEU ALA LEU VAL ASP GLU ILE SEQRES 38 A 622 GLU VAL TRP LEU ALA TYR GLN ASN LYS LEU LYS LYS SER SEQRES 39 A 622 LEU GLY LEU THR SER VAL THR SER GLU MET ARG PHE PHE SEQRES 40 A 622 ASP VAL SER GLY VAL THR VAL THR ASP LEU GLN ASP ALA SEQRES 41 A 622 GLU LEU GLN VAL LYS ALA ALA GLU LYS SER GLU PHE ARG SEQRES 42 A 622 GLU TRP ILE LEU GLN TRP GLY PRO LEU HIS ARG VAL LEU SEQRES 43 A 622 GLU ARG LYS ALA PRO GLU ARG VAL ASN ALA LEU ARG GLU SEQRES 44 A 622 LYS GLN ILE SER ASP TYR GLU GLU THR TYR ARG MET LEU SEQRES 45 A 622 SER ASP THR GLU LEU ARG PRO SER GLY LEU VAL GLY ASN SEQRES 46 A 622 THR ASP ALA GLU ARG THR ILE GLY ALA ARG ALA MET GLU SEQRES 47 A 622 SER ALA LYS LYS THR PHE LEU ASP GLY LEU ARG PRO LEU SEQRES 48 A 622 VAL GLU GLU MET LEU GLY SER TYR LEU ASN VAL FORMUL 2 HOH *406(H2 O) HELIX 1 1 ALA A 171 ALA A 179 1 9 HELIX 2 2 ALA A 180 GLU A 183 5 4 HELIX 3 3 GLU A 184 GLY A 202 1 19 HELIX 4 4 PRO A 438 LEU A 444 5 7 HELIX 5 5 SER A 458 ALA A 471 1 14 HELIX 6 6 ALA A 494 ASP A 501 1 8 HELIX 7 7 ALA A 514 GLY A 521 1 8 HELIX 8 8 ASN A 525 SER A 537 1 13 HELIX 9 9 THR A 539 ASP A 545 1 7 HELIX 10 10 GLY A 547 GLU A 561 1 15 HELIX 11 11 ASP A 562 ALA A 573 1 12 HELIX 12 12 CYS A 580 GLY A 603 1 24 HELIX 13 13 ASP A 608 THR A 635 1 28 HELIX 14 14 ASP A 640 LEU A 652 1 13 HELIX 15 15 PHE A 667 SER A 671 5 5 HELIX 16 16 THR A 674 GLN A 699 1 26 HELIX 17 17 TRP A 700 ALA A 711 1 12 HELIX 18 18 ALA A 711 GLU A 737 1 27 HELIX 19 19 ASN A 746 GLY A 778 1 33 HELIX 20 20 SER A 779 LEU A 781 5 3 SHEET 1 A15 VAL A 205 ASN A 207 0 SHEET 2 A15 THR A 226 ILE A 229 1 O VAL A 228 N LEU A 206 SHEET 3 A15 THR A 246 VAL A 249 1 O GLU A 248 N ILE A 229 SHEET 4 A15 GLU A 266 ILE A 269 1 O SER A 268 N LEU A 247 SHEET 5 A15 LYS A 286 TRP A 288 1 O TRP A 288 N LEU A 267 SHEET 6 A15 GLU A 306 SER A 308 1 O SER A 308 N LEU A 287 SHEET 7 A15 LYS A 326 TRP A 328 1 O TRP A 328 N LEU A 307 SHEET 8 A15 GLU A 346 SER A 348 1 O SER A 348 N LEU A 327 SHEET 9 A15 LYS A 366 TRP A 368 1 O TRP A 368 N LEU A 347 SHEET 10 A15 GLU A 386 ILE A 388 1 O ILE A 388 N LEU A 367 SHEET 11 A15 GLU A 406 MET A 408 1 O MET A 408 N LEU A 387 SHEET 12 A15 SER A 426 SER A 428 1 O SER A 428 N LEU A 407 SHEET 13 A15 THR A 449 ASN A 451 1 O THR A 449 N LEU A 427 SHEET 14 A15 ILE A 478 ARG A 480 1 O ARG A 480 N VAL A 450 SHEET 15 A15 LEU A 638 VAL A 639 1 O VAL A 639 N ILE A 479 CISPEP 1 GLY A 742 LEU A 743 0 -12.91 CRYST1 76.885 76.885 281.054 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013006 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003558 0.00000