HEADER TRANSCRIPTION 28-JAN-09 3G0J TITLE CRYSTAL STRUCTURE OF THE FIFTH BROMODOMAIN OF HUMAN POLY-BROMODOMAIN TITLE 2 CONTAINING PROTEIN 1 (PB1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN POLYBROMO-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 645-766; COMPND 5 SYNONYM: HPB1, POLYBROMO-1D, BRG1-ASSOCIATED FACTOR 180, BAF180; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PBRM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS PB1, POLYBROMO 1 ISOFORM 1, BAF180, POLYBROMO-1D, PBRM1, BRG1- KEYWDS 2 ASSOCIATED FACTOR 180, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,T.KEATES,S.PICAUD,F.VON DELFT,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 3 01-NOV-23 3G0J 1 REMARK SEQADV REVDAT 2 13-JUL-11 3G0J 1 VERSN REVDAT 1 10-FEB-09 3G0J 0 JRNL AUTH P.FILIPPAKOPOULOS,T.KEATES,S.PICAUD,F.VON DELFT, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF THE FIFTH BROMODOMAIN OF HUMAN JRNL TITL 2 POLY-BROMODOMAIN CONTAINING PROTEIN 1 (PB1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 28246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1428 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2018 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.4000 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.4560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1870 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.317 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1947 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1383 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2614 ; 1.373 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3373 ; 0.926 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 5.187 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;31.468 ;23.626 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 383 ;14.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.520 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 292 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2067 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 381 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1158 ; 2.808 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 445 ; 1.266 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1889 ; 3.557 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 789 ; 5.210 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 725 ; 6.667 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 623 A 654 4 REMARK 3 1 B 623 B 654 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 462 ; 0.530 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 462 ; 1.290 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 673 A 700 4 REMARK 3 1 B 673 B 700 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 393 ; 0.420 ; 0.500 REMARK 3 MEDIUM THERMAL 2 A (A**2): 393 ; 1.330 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 711 A 731 4 REMARK 3 1 B 711 B 731 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 A (A): 269 ; 0.310 ; 0.500 REMARK 3 MEDIUM THERMAL 3 A (A**2): 269 ; 1.220 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 615 A 621 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3000 -18.0105 -10.0370 REMARK 3 T TENSOR REMARK 3 T11: 0.5183 T22: 0.5293 REMARK 3 T33: 0.5011 T12: -0.0475 REMARK 3 T13: 0.1339 T23: 0.0747 REMARK 3 L TENSOR REMARK 3 L11: 4.5982 L22: 3.3303 REMARK 3 L33: 0.1423 L12: 1.7139 REMARK 3 L13: -0.7926 L23: -0.3457 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: -0.1985 S13: 0.2243 REMARK 3 S21: 0.0853 S22: 0.1391 S23: 0.6795 REMARK 3 S31: 0.0616 S32: -0.0020 S33: -0.0219 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 622 A 641 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4762 -14.1286 -6.8810 REMARK 3 T TENSOR REMARK 3 T11: 0.0695 T22: 0.0773 REMARK 3 T33: 0.0135 T12: -0.0115 REMARK 3 T13: -0.0022 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.1033 L22: 9.6457 REMARK 3 L33: 4.1096 L12: 2.8864 REMARK 3 L13: -1.4555 L23: -4.4989 REMARK 3 S TENSOR REMARK 3 S11: 0.1187 S12: -0.3114 S13: 0.1320 REMARK 3 S21: 0.4935 S22: -0.0504 S23: 0.0270 REMARK 3 S31: -0.1728 S32: 0.0451 S33: -0.0684 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 642 A 671 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2188 -6.7464 -25.5926 REMARK 3 T TENSOR REMARK 3 T11: 0.0487 T22: 0.0517 REMARK 3 T33: 0.0481 T12: 0.0001 REMARK 3 T13: 0.0356 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 2.3882 L22: 2.2299 REMARK 3 L33: 2.6049 L12: 0.8261 REMARK 3 L13: 1.8789 L23: 1.4083 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: -0.0222 S13: 0.0841 REMARK 3 S21: 0.0493 S22: -0.0246 S23: -0.0114 REMARK 3 S31: -0.0717 S32: 0.0323 S33: -0.0096 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 672 A 731 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1566 -13.8406 -19.6787 REMARK 3 T TENSOR REMARK 3 T11: 0.0056 T22: 0.0031 REMARK 3 T33: 0.0065 T12: 0.0015 REMARK 3 T13: -0.0057 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 3.1375 L22: 4.4954 REMARK 3 L33: 5.3140 L12: 1.7043 REMARK 3 L13: -2.3665 L23: -3.1203 REMARK 3 S TENSOR REMARK 3 S11: 0.0518 S12: -0.0333 S13: -0.0457 REMARK 3 S21: 0.0967 S22: -0.0521 S23: -0.1171 REMARK 3 S31: 0.0197 S32: 0.1138 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 621 B 642 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5169 13.8639 -11.4481 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.1033 REMARK 3 T33: 0.0203 T12: -0.0210 REMARK 3 T13: 0.0297 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.7315 L22: 7.6115 REMARK 3 L33: 3.9875 L12: 3.2195 REMARK 3 L13: 2.1065 L23: 5.1420 REMARK 3 S TENSOR REMARK 3 S11: 0.1169 S12: -0.2180 S13: -0.0054 REMARK 3 S21: 0.5149 S22: -0.1611 S23: 0.1001 REMARK 3 S31: 0.3734 S32: -0.0900 S33: 0.0442 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 643 B 658 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9196 1.9681 -24.6156 REMARK 3 T TENSOR REMARK 3 T11: 0.0944 T22: 0.0052 REMARK 3 T33: 0.0088 T12: 0.0097 REMARK 3 T13: -0.0106 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 6.7208 L22: 6.2361 REMARK 3 L33: 2.6048 L12: 4.8137 REMARK 3 L13: -1.1500 L23: -1.4592 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: 0.0105 S13: -0.1642 REMARK 3 S21: -0.0498 S22: -0.1044 S23: -0.0843 REMARK 3 S31: 0.2313 S32: 0.0084 S33: 0.0113 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 659 B 707 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9754 15.7401 -26.2971 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: 0.0082 REMARK 3 T33: 0.0367 T12: -0.0056 REMARK 3 T13: 0.0095 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.2933 L22: 0.7215 REMARK 3 L33: 4.6648 L12: -0.1445 REMARK 3 L13: -1.2605 L23: 0.5385 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: -0.0140 S13: 0.0830 REMARK 3 S21: -0.0463 S22: 0.0163 S23: -0.1133 REMARK 3 S31: -0.1286 S32: 0.1708 S33: 0.0242 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 708 B 731 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2163 9.4817 -26.8291 REMARK 3 T TENSOR REMARK 3 T11: 0.0191 T22: 0.0423 REMARK 3 T33: 0.0513 T12: -0.0088 REMARK 3 T13: -0.0015 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 5.1918 L22: 5.9126 REMARK 3 L33: 10.1996 L12: -2.0489 REMARK 3 L13: -2.1448 L23: 4.7760 REMARK 3 S TENSOR REMARK 3 S11: 0.0442 S12: -0.1505 S13: 0.0800 REMARK 3 S21: 0.0633 S22: -0.1381 S23: 0.3475 REMARK 3 S31: -0.1643 S32: -0.3700 S33: 0.0939 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3G0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28304 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 30.831 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.07900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.70300 REMARK 200 R SYM FOR SHELL (I) : 0.70300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ENSEMBLE OF 3DWY, 3DAI, 3D7C, 2OUO, 2OSS, 2OO1, REMARK 200 2NXB, 2GRC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NA_NITRATE, 25% W/V PEG 3350, 5% REMARK 280 V/V ETHYLENE GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.68500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.65000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.68500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 611 REMARK 465 MET A 612 REMARK 465 SER A 613 REMARK 465 GLY A 614 REMARK 465 GLU A 732 REMARK 465 GLY A 733 REMARK 465 ASP A 734 REMARK 465 SER B 611 REMARK 465 MET B 612 REMARK 465 SER B 613 REMARK 465 GLY B 614 REMARK 465 ILE B 615 REMARK 465 SER B 616 REMARK 465 PRO B 617 REMARK 465 LYS B 618 REMARK 465 LYS B 619 REMARK 465 SER B 620 REMARK 465 GLU B 732 REMARK 465 GLY B 733 REMARK 465 ASP B 734 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 618 CG CD CE NZ REMARK 470 LYS A 619 CG CD CE NZ REMARK 470 LYS A 621 CD CE NZ REMARK 470 LYS A 643 CE NZ REMARK 470 LYS A 669 CE NZ REMARK 470 LYS B 621 CG CD CE NZ REMARK 470 LYS B 629 CE NZ REMARK 470 GLU B 660 CG CD OE1 OE2 REMARK 470 LYS B 722 CE NZ REMARK 470 ARG B 729 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 669 O HOH B 182 1.98 REMARK 500 NH1 ARG B 647 O HOH B 88 1.99 REMARK 500 O HOH A 213 O HOH B 241 2.01 REMARK 500 OE1 GLU B 694 O HOH B 171 2.10 REMARK 500 O HOH A 223 O HOH A 239 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 660 30.07 74.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 735 DBREF 3G0J A 613 734 UNP Q86U86 PB1_HUMAN 645 766 DBREF 3G0J B 613 734 UNP Q86U86 PB1_HUMAN 645 766 SEQADV 3G0J SER A 611 UNP Q86U86 EXPRESSION TAG SEQADV 3G0J MET A 612 UNP Q86U86 EXPRESSION TAG SEQADV 3G0J SER B 611 UNP Q86U86 EXPRESSION TAG SEQADV 3G0J MET B 612 UNP Q86U86 EXPRESSION TAG SEQRES 1 A 124 SER MET SER GLY ILE SER PRO LYS LYS SER LYS TYR MET SEQRES 2 A 124 THR PRO MET GLN GLN LYS LEU ASN GLU VAL TYR GLU ALA SEQRES 3 A 124 VAL LYS ASN TYR THR ASP LYS ARG GLY ARG ARG LEU SER SEQRES 4 A 124 ALA ILE PHE LEU ARG LEU PRO SER ARG SER GLU LEU PRO SEQRES 5 A 124 ASP TYR TYR LEU THR ILE LYS LYS PRO MET ASP MET GLU SEQRES 6 A 124 LYS ILE ARG SER HIS MET MET ALA ASN LYS TYR GLN ASP SEQRES 7 A 124 ILE ASP SER MET VAL GLU ASP PHE VAL MET MET PHE ASN SEQRES 8 A 124 ASN ALA CYS THR TYR ASN GLU PRO GLU SER LEU ILE TYR SEQRES 9 A 124 LYS ASP ALA LEU VAL LEU HIS LYS VAL LEU LEU GLU THR SEQRES 10 A 124 ARG ARG ASP LEU GLU GLY ASP SEQRES 1 B 124 SER MET SER GLY ILE SER PRO LYS LYS SER LYS TYR MET SEQRES 2 B 124 THR PRO MET GLN GLN LYS LEU ASN GLU VAL TYR GLU ALA SEQRES 3 B 124 VAL LYS ASN TYR THR ASP LYS ARG GLY ARG ARG LEU SER SEQRES 4 B 124 ALA ILE PHE LEU ARG LEU PRO SER ARG SER GLU LEU PRO SEQRES 5 B 124 ASP TYR TYR LEU THR ILE LYS LYS PRO MET ASP MET GLU SEQRES 6 B 124 LYS ILE ARG SER HIS MET MET ALA ASN LYS TYR GLN ASP SEQRES 7 B 124 ILE ASP SER MET VAL GLU ASP PHE VAL MET MET PHE ASN SEQRES 8 B 124 ASN ALA CYS THR TYR ASN GLU PRO GLU SER LEU ILE TYR SEQRES 9 B 124 LYS ASP ALA LEU VAL LEU HIS LYS VAL LEU LEU GLU THR SEQRES 10 B 124 ARG ARG ASP LEU GLU GLY ASP HET EDO A 2 4 HET EDO B 1 4 HET EDO B 3 4 HET EDO B 4 4 HET NO3 B 735 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM NO3 NITRATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 NO3 N O3 1- FORMUL 8 HOH *263(H2 O) HELIX 1 1 THR A 624 TYR A 640 1 17 HELIX 2 2 ARG A 647 LEU A 653 5 7 HELIX 3 3 ASP A 663 THR A 667 5 5 HELIX 4 4 ASP A 673 ALA A 683 1 11 HELIX 5 5 ASP A 688 ASN A 707 1 20 HELIX 6 6 SER A 711 LEU A 731 1 21 HELIX 7 7 THR B 624 TYR B 640 1 17 HELIX 8 8 ARG B 647 LEU B 653 5 7 HELIX 9 9 ASP B 663 ILE B 668 1 6 HELIX 10 10 ASP B 673 ALA B 683 1 11 HELIX 11 11 ASP B 688 TYR B 706 1 19 HELIX 12 12 SER B 711 LEU B 731 1 21 CISPEP 1 LEU B 655 PRO B 656 0 0.67 SITE 1 AC1 6 HOH A 183 HOH A 214 MET A 672 LYS A 676 SITE 2 AC1 6 HIS A 680 ASP A 695 SITE 1 AC2 5 TYR A 714 HOH B 182 LEU B 666 THR B 667 SITE 2 AC2 5 LYS B 669 SITE 1 AC3 8 EDO B 4 HOH B 165 PRO B 656 SER B 657 SITE 2 AC3 8 ARG B 658 LEU B 661 TYR B 706 NO3 B 735 SITE 1 AC4 6 EDO B 3 LEU B 655 SER B 657 ASN B 707 SITE 2 AC4 6 ILE B 713 NO3 B 735 SITE 1 AC5 7 EDO B 3 EDO B 4 HOH B 19 PRO B 656 SITE 2 AC5 7 TYR B 664 ASN B 702 ALA B 703 CRYST1 36.570 57.370 137.300 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017431 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007283 0.00000