HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JAN-09 3G16 TITLE CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION WITH CYSTATIN-LIKE TITLE 2 FOLD (YP_001022489.1) FROM METHYLOBIUM PETROLEOPHILUM PM1 AT 1.45 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN WITH CYSTATIN-LIKE FOLD; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLIBIUM PETROLEIPHILUM PM1; SOURCE 3 ORGANISM_TAXID: 420662; SOURCE 4 GENE: MPE_A3301, YP_001022489.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_001022489.1, PROTEIN OF UNKNOWN FUNCTION WITH CYSTATIN-LIKE FOLD, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3G16 1 REMARK SEQADV REVDAT 4 24-JUL-19 3G16 1 REMARK LINK REVDAT 3 25-OCT-17 3G16 1 REMARK REVDAT 2 13-JUL-11 3G16 1 VERSN REVDAT 1 17-FEB-09 3G16 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION WITH JRNL TITL 2 CYSTATIN-LIKE FOLD (YP_001022489.1) FROM METHYLOBIUM JRNL TITL 3 PETROLEOPHILUM PM1 AT 1.45 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 63622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3217 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4345 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 234 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.695 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2564 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1803 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3485 ; 1.664 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4321 ; 0.926 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 4.535 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;31.429 ;21.680 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 412 ;10.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;13.977 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2937 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 608 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 454 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1950 ; 0.214 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1242 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1433 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 267 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.309 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.197 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1666 ; 1.421 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 643 ; 0.344 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2504 ; 1.911 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1119 ; 1.700 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 968 ; 2.631 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8196 53.4375 12.7363 REMARK 3 T TENSOR REMARK 3 T11: -0.0225 T22: -0.0274 REMARK 3 T33: -0.0308 T12: 0.0026 REMARK 3 T13: -0.0008 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.3110 L22: 0.5852 REMARK 3 L33: 0.4579 L12: 0.0599 REMARK 3 L13: 0.0527 L23: 0.1840 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.0017 S13: -0.0062 REMARK 3 S21: -0.0049 S22: -0.0119 S23: -0.0280 REMARK 3 S31: 0.0436 S32: -0.0194 S33: -0.0062 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 155 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5126 67.6002 18.5767 REMARK 3 T TENSOR REMARK 3 T11: -0.0346 T22: -0.0124 REMARK 3 T33: -0.0064 T12: 0.0210 REMARK 3 T13: -0.0127 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.4239 L22: 1.1988 REMARK 3 L33: 0.6645 L12: 0.2876 REMARK 3 L13: 0.2003 L23: 0.4724 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: -0.0193 S13: 0.1263 REMARK 3 S21: -0.0333 S22: -0.0962 S23: 0.1821 REMARK 3 S31: -0.0764 S32: -0.1345 S33: 0.0941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.CHLORIDE REMARK 3 (CL) FROM THE CRYSTALLIZATION AND GLYCEROL (GOL) FROM THE REMARK 3 CRYOPROTECTION CONDITION HAVE BEEN MODELED IN THE SOLVENT REMARK 3 STRUCTURE. 5.AN UNIDENTIFIED LIGAND (UNL) HAS BEEN MODELED IN REMARK 3 THE PUTATIVE ACTIVE SITE IN BOTH PROTEIN MOLECULES. IT IS REMARK 3 POSSIBLE THAT THIS UNL IS ACTUALLY A PARTIALLY OCCUPIED MES REMARK 3 MOLECULE FROM THE CRYSTALLIZATION BUFFER. THIS INFERENCE IS REMARK 3 BASED ON THE LOWER B-FACTOR OF ATOM O7 OF UNL-1 WHICH SUGGESTS REMARK 3 THAT THIS MAY BE A HEAVIER ATOM (LIKE SULFUR). 6.RESIDUES 45-48 REMARK 3 IN CHAIN B HAVE POOR ELECTRON DENSITY AND AND HAVE BEEN MODELED REMARK 3 BASED ON THE CORRESPONDING REGION OF CHAIN A. REMARK 4 REMARK 4 3G16 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97864,0.97817 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63677 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 27.973 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0000M LICL, 20.0000% PEG-6000, 0.1M REMARK 280 MES PH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.28000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.73000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.73000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.28000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS AND ANALYTICAL SIZE REMARK 300 EXCLUSION CHROMATOGRAPHY SUGGEST THAT A DIMER IS THE REMARK 300 STABLE OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 129 CD OE1 OE2 REMARK 470 LYS B 13 CE NZ REMARK 470 GLU B 129 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 GOL A 160 O HOH A 308 4465 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 147 CG - CD - NE ANGL. DEV. = -19.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 157 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391024 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3G16 A 1 155 UNP A2SL15 A2SL15_METPP 1 155 DBREF 3G16 B 1 155 UNP A2SL15 A2SL15_METPP 1 155 SEQADV 3G16 GLY A 0 UNP A2SL15 EXPRESSION TAG SEQADV 3G16 GLY B 0 UNP A2SL15 EXPRESSION TAG SEQRES 1 A 156 GLY MSE THR ALA PRO THR LEU SER ARG ALA ALA MSE GLU SEQRES 2 A 156 LYS VAL ILE ARG THR TYR TYR ASP GLY CYS ASN GLU ALA SEQRES 3 A 156 ASP GLU ALA LYS MSE ILE ALA CYS PHE VAL PRO GLU ALA SEQRES 4 A 156 VAL HIS TYR PHE PRO ALA GLY MSE TYR GLY GLY ALA PHE SEQRES 5 A 156 ARG GLY ALA ALA GLN ILE ALA HIS ARG TRP ARG THR ALA SEQRES 6 A 156 VAL GLU THR LEU GLY SER TYR TRP THR ILE ASP ALA LEU SEQRES 7 A 156 VAL ILE ASP ALA GLU THR ALA GLU ALA ALA ILE GLU TRP SEQRES 8 A 156 THR HIS PHE LYS THR ASN GLN ASP LYS VAL LEU ARG GLY SEQRES 9 A 156 ALA GLU CYS VAL GLU PHE ASP ARG ALA SER GLY LEU ILE SEQRES 10 A 156 ARG GLU ILE ARG ALA PHE TYR ALA SER PRO GLN ALA GLU SEQRES 11 A 156 GLY ILE ALA ARG LEU GLU LEU GLY ASP PHE ASP TYR ALA SEQRES 12 A 156 GLY ARG GLY TYR ARG VAL THR SER PRO ARG LYS PRO ALA SEQRES 1 B 156 GLY MSE THR ALA PRO THR LEU SER ARG ALA ALA MSE GLU SEQRES 2 B 156 LYS VAL ILE ARG THR TYR TYR ASP GLY CYS ASN GLU ALA SEQRES 3 B 156 ASP GLU ALA LYS MSE ILE ALA CYS PHE VAL PRO GLU ALA SEQRES 4 B 156 VAL HIS TYR PHE PRO ALA GLY MSE TYR GLY GLY ALA PHE SEQRES 5 B 156 ARG GLY ALA ALA GLN ILE ALA HIS ARG TRP ARG THR ALA SEQRES 6 B 156 VAL GLU THR LEU GLY SER TYR TRP THR ILE ASP ALA LEU SEQRES 7 B 156 VAL ILE ASP ALA GLU THR ALA GLU ALA ALA ILE GLU TRP SEQRES 8 B 156 THR HIS PHE LYS THR ASN GLN ASP LYS VAL LEU ARG GLY SEQRES 9 B 156 ALA GLU CYS VAL GLU PHE ASP ARG ALA SER GLY LEU ILE SEQRES 10 B 156 ARG GLU ILE ARG ALA PHE TYR ALA SER PRO GLN ALA GLU SEQRES 11 B 156 GLY ILE ALA ARG LEU GLU LEU GLY ASP PHE ASP TYR ALA SEQRES 12 B 156 GLY ARG GLY TYR ARG VAL THR SER PRO ARG LYS PRO ALA MODRES 3G16 MSE A 1 MET SELENOMETHIONINE MODRES 3G16 MSE A 11 MET SELENOMETHIONINE MODRES 3G16 MSE A 30 MET SELENOMETHIONINE MODRES 3G16 MSE A 46 MET SELENOMETHIONINE MODRES 3G16 MSE B 11 MET SELENOMETHIONINE MODRES 3G16 MSE B 30 MET SELENOMETHIONINE MODRES 3G16 MSE B 46 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 11 8 HET MSE A 30 8 HET MSE A 46 8 HET MSE B 11 13 HET MSE B 30 8 HET MSE B 46 8 HET UNL A 156 9 HET CL A 157 1 HET CL A 158 1 HET CL A 159 1 HET GOL A 160 6 HET GOL A 161 6 HET UNL B 156 9 HET CL B 157 1 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 4 CL 4(CL 1-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 11 HOH *372(H2 O) HELIX 1 1 SER A 7 GLU A 24 1 18 HELIX 2 2 ASP A 26 ALA A 32 1 7 HELIX 3 3 GLY A 53 GLY A 69 1 17 HELIX 4 4 ASN A 96 ASP A 98 5 3 HELIX 5 5 SER B 7 GLU B 24 1 18 HELIX 6 6 ASP B 26 ALA B 32 1 7 HELIX 7 7 GLY B 53 GLY B 69 1 17 HELIX 8 8 ASN B 96 ASP B 98 5 3 SHEET 1 A 6 PHE A 51 ARG A 52 0 SHEET 2 A 6 PHE A 34 TYR A 41 -1 N HIS A 40 O PHE A 51 SHEET 3 A 6 ILE A 116 TYR A 123 1 O ILE A 119 N TYR A 41 SHEET 4 A 6 LYS A 99 PHE A 109 -1 N ALA A 104 O PHE A 122 SHEET 5 A 6 GLU A 85 LYS A 94 -1 N HIS A 92 O LEU A 101 SHEET 6 A 6 SER A 70 ASP A 80 -1 N TYR A 71 O PHE A 93 SHEET 1 B 5 PHE A 51 ARG A 52 0 SHEET 2 B 5 PHE A 34 TYR A 41 -1 N HIS A 40 O PHE A 51 SHEET 3 B 5 ILE A 116 TYR A 123 1 O ILE A 119 N TYR A 41 SHEET 4 B 5 LYS A 99 PHE A 109 -1 N ALA A 104 O PHE A 122 SHEET 5 B 5 ARG B 133 LEU B 134 1 O LEU B 134 N VAL A 100 SHEET 1 C 5 ARG A 133 LEU A 134 0 SHEET 2 C 5 LYS B 99 ASP B 110 1 O VAL B 100 N LEU A 134 SHEET 3 C 5 LEU B 115 TYR B 123 -1 O PHE B 122 N ALA B 104 SHEET 4 C 5 PHE B 34 TYR B 41 1 N TYR B 41 O ILE B 119 SHEET 5 C 5 PHE B 51 ARG B 52 -1 O PHE B 51 N HIS B 40 SHEET 1 D 4 ARG A 133 LEU A 134 0 SHEET 2 D 4 LYS B 99 ASP B 110 1 O VAL B 100 N LEU A 134 SHEET 3 D 4 GLU B 85 LYS B 94 -1 N HIS B 92 O LEU B 101 SHEET 4 D 4 SER B 70 ASP B 80 -1 N ASP B 80 O GLU B 85 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C ALA A 10 N MSE A 11 1555 1555 1.32 LINK C MSE A 11 N GLU A 12 1555 1555 1.33 LINK C LYS A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N ILE A 31 1555 1555 1.33 LINK C GLY A 45 N MSE A 46 1555 1555 1.33 LINK C MSE A 46 N TYR A 47 1555 1555 1.34 LINK C ALA B 10 N MSE B 11 1555 1555 1.33 LINK C MSE B 11 N GLU B 12 1555 1555 1.33 LINK C LYS B 29 N MSE B 30 1555 1555 1.33 LINK C MSE B 30 N ILE B 31 1555 1555 1.33 LINK C GLY B 45 N MSE B 46 1555 1555 1.34 LINK C MSE B 46 N TYR B 47 1555 1555 1.33 SITE 1 AC1 11 TYR A 19 CYS A 22 PHE A 42 TYR A 47 SITE 2 AC1 11 TRP A 61 TRP A 72 TRP A 90 HIS A 92 SITE 3 AC1 11 GLU A 105 TYR A 123 HOH A 194 SITE 1 AC2 3 ARG A 147 VAL A 148 THR A 149 SITE 1 AC3 3 SER A 150 LYS A 153 GOL A 161 SITE 1 AC4 4 SER A 7 ARG A 8 HOH A 204 HOH B 258 SITE 1 AC5 8 ALA A 32 ASP A 75 HOH A 208 HOH A 308 SITE 2 AC5 8 HOH A 372 ARG B 144 GLY B 145 TYR B 146 SITE 1 AC6 6 ARG A 133 LYS A 153 CL A 158 HOH A 300 SITE 2 AC6 6 HOH A 344 ASP B 98 SITE 1 AC7 11 HOH A 371 TYR B 19 CYS B 22 TYR B 47 SITE 2 AC7 11 TRP B 61 TRP B 72 TRP B 90 HIS B 92 SITE 3 AC7 11 GLU B 105 TYR B 123 HOH B 211 SITE 1 AC8 4 LYS A 13 VAL B 148 THR B 149 HOH B 247 CRYST1 48.560 68.450 107.460 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009306 0.00000