HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JAN-09 3G16 TITLE CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION WITH CYSTATIN-LIKE TITLE 2 FOLD (YP_001022489.1) FROM METHYLOBIUM PETROLEOPHILUM PM1 AT 1.45 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN WITH CYSTATIN-LIKE FOLD; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLIBIUM PETROLEIPHILUM PM1; SOURCE 3 ORGANISM_TAXID: 420662; SOURCE 4 GENE: MPE_A3301, YP_001022489.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_001022489.1, PROTEIN OF UNKNOWN FUNCTION WITH CYSTATIN-LIKE FOLD, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 20-NOV-24 3G16 1 REMARK REVDAT 5 01-FEB-23 3G16 1 REMARK SEQADV REVDAT 4 24-JUL-19 3G16 1 REMARK LINK REVDAT 3 25-OCT-17 3G16 1 REMARK REVDAT 2 13-JUL-11 3G16 1 VERSN REVDAT 1 17-FEB-09 3G16 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION WITH JRNL TITL 2 CYSTATIN-LIKE FOLD (YP_001022489.1) FROM METHYLOBIUM JRNL TITL 3 PETROLEOPHILUM PM1 AT 1.45 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 63622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3217 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4345 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 234 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.695 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2564 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1803 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3485 ; 1.664 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4321 ; 0.926 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 4.535 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;31.429 ;21.680 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 412 ;10.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;13.977 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2937 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 608 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 454 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1950 ; 0.214 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1242 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1433 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 267 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.309 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.197 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1666 ; 1.421 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 643 ; 0.344 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2504 ; 1.911 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1119 ; 1.700 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 968 ; 2.631 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8196 53.4375 12.7363 REMARK 3 T TENSOR REMARK 3 T11: -0.0225 T22: -0.0274 REMARK 3 T33: -0.0308 T12: 0.0026 REMARK 3 T13: -0.0008 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.3110 L22: 0.5852 REMARK 3 L33: 0.4579 L12: 0.0599 REMARK 3 L13: 0.0527 L23: 0.1840 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.0017 S13: -0.0062 REMARK 3 S21: -0.0049 S22: -0.0119 S23: -0.0280 REMARK 3 S31: 0.0436 S32: -0.0194 S33: -0.0062 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 155 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5126 67.6002 18.5767 REMARK 3 T TENSOR REMARK 3 T11: -0.0346 T22: -0.0124 REMARK 3 T33: -0.0064 T12: 0.0210 REMARK 3 T13: -0.0127 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.4239 L22: 1.1988 REMARK 3 L33: 0.6645 L12: 0.2876 REMARK 3 L13: 0.2003 L23: 0.4724 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: -0.0193 S13: 0.1263 REMARK 3 S21: -0.0333 S22: -0.0962 S23: 0.1821 REMARK 3 S31: -0.0764 S32: -0.1345 S33: 0.0941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.CHLORIDE REMARK 3 (CL) FROM THE CRYSTALLIZATION AND GLYCEROL (GOL) FROM THE REMARK 3 CRYOPROTECTION CONDITION HAVE BEEN MODELED IN THE SOLVENT REMARK 3 STRUCTURE. 5.AN UNIDENTIFIED LIGAND (UNL) HAS BEEN MODELED IN REMARK 3 THE PUTATIVE ACTIVE SITE IN BOTH PROTEIN MOLECULES. IT IS REMARK 3 POSSIBLE THAT THIS UNL IS ACTUALLY A PARTIALLY OCCUPIED MES REMARK 3 MOLECULE FROM THE CRYSTALLIZATION BUFFER. THIS INFERENCE IS REMARK 3 BASED ON THE LOWER B-FACTOR OF ATOM O7 OF UNL-1 WHICH SUGGESTS REMARK 3 THAT THIS MAY BE A HEAVIER ATOM (LIKE SULFUR). 6.RESIDUES 45-48 REMARK 3 IN CHAIN B HAVE POOR ELECTRON DENSITY AND AND HAVE BEEN MODELED REMARK 3 BASED ON THE CORRESPONDING REGION OF CHAIN A. REMARK 4 REMARK 4 3G16 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97864,0.97817 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63677 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 27.973 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0000M LICL, 20.0000% PEG-6000, 0.1M REMARK 280 MES PH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.28000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.73000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.73000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.28000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS AND ANALYTICAL SIZE REMARK 300 EXCLUSION CHROMATOGRAPHY SUGGEST THAT A DIMER IS THE REMARK 300 STABLE OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 129 CD OE1 OE2 REMARK 470 LYS B 13 CE NZ REMARK 470 GLU B 129 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 GOL A 160 O HOH A 308 4465 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 147 CG - CD - NE ANGL. DEV. = -19.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 157 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391024 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3G16 A 1 155 UNP A2SL15 A2SL15_METPP 1 155 DBREF 3G16 B 1 155 UNP A2SL15 A2SL15_METPP 1 155 SEQADV 3G16 GLY A 0 UNP A2SL15 EXPRESSION TAG SEQADV 3G16 GLY B 0 UNP A2SL15 EXPRESSION TAG SEQRES 1 A 156 GLY MSE THR ALA PRO THR LEU SER ARG ALA ALA MSE GLU SEQRES 2 A 156 LYS VAL ILE ARG THR TYR TYR ASP GLY CYS ASN GLU ALA SEQRES 3 A 156 ASP GLU ALA LYS MSE ILE ALA CYS PHE VAL PRO GLU ALA SEQRES 4 A 156 VAL HIS TYR PHE PRO ALA GLY MSE TYR GLY GLY ALA PHE SEQRES 5 A 156 ARG GLY ALA ALA GLN ILE ALA HIS ARG TRP ARG THR ALA SEQRES 6 A 156 VAL GLU THR LEU GLY SER TYR TRP THR ILE ASP ALA LEU SEQRES 7 A 156 VAL ILE ASP ALA GLU THR ALA GLU ALA ALA ILE GLU TRP SEQRES 8 A 156 THR HIS PHE LYS THR ASN GLN ASP LYS VAL LEU ARG GLY SEQRES 9 A 156 ALA GLU CYS VAL GLU PHE ASP ARG ALA SER GLY LEU ILE SEQRES 10 A 156 ARG GLU ILE ARG ALA PHE TYR ALA SER PRO GLN ALA GLU SEQRES 11 A 156 GLY ILE ALA ARG LEU GLU LEU GLY ASP PHE ASP TYR ALA SEQRES 12 A 156 GLY ARG GLY TYR ARG VAL THR SER PRO ARG LYS PRO ALA SEQRES 1 B 156 GLY MSE THR ALA PRO THR LEU SER ARG ALA ALA MSE GLU SEQRES 2 B 156 LYS VAL ILE ARG THR TYR TYR ASP GLY CYS ASN GLU ALA SEQRES 3 B 156 ASP GLU ALA LYS MSE ILE ALA CYS PHE VAL PRO GLU ALA SEQRES 4 B 156 VAL HIS TYR PHE PRO ALA GLY MSE TYR GLY GLY ALA PHE SEQRES 5 B 156 ARG GLY ALA ALA GLN ILE ALA HIS ARG TRP ARG THR ALA SEQRES 6 B 156 VAL GLU THR LEU GLY SER TYR TRP THR ILE ASP ALA LEU SEQRES 7 B 156 VAL ILE ASP ALA GLU THR ALA GLU ALA ALA ILE GLU TRP SEQRES 8 B 156 THR HIS PHE LYS THR ASN GLN ASP LYS VAL LEU ARG GLY SEQRES 9 B 156 ALA GLU CYS VAL GLU PHE ASP ARG ALA SER GLY LEU ILE SEQRES 10 B 156 ARG GLU ILE ARG ALA PHE TYR ALA SER PRO GLN ALA GLU SEQRES 11 B 156 GLY ILE ALA ARG LEU GLU LEU GLY ASP PHE ASP TYR ALA SEQRES 12 B 156 GLY ARG GLY TYR ARG VAL THR SER PRO ARG LYS PRO ALA MODRES 3G16 MSE A 1 MET SELENOMETHIONINE MODRES 3G16 MSE A 11 MET SELENOMETHIONINE MODRES 3G16 MSE A 30 MET SELENOMETHIONINE MODRES 3G16 MSE A 46 MET SELENOMETHIONINE MODRES 3G16 MSE B 11 MET SELENOMETHIONINE MODRES 3G16 MSE B 30 MET SELENOMETHIONINE MODRES 3G16 MSE B 46 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 11 8 HET MSE A 30 8 HET MSE A 46 8 HET MSE B 11 13 HET MSE B 30 8 HET MSE B 46 8 HET UNL A 156 9 HET CL A 157 1 HET CL A 158 1 HET CL A 159 1 HET GOL A 160 6 HET GOL A 161 6 HET UNL B 156 9 HET CL B 157 1 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 4 CL 4(CL 1-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 11 HOH *372(H2 O) HELIX 1 1 SER A 7 GLU A 24 1 18 HELIX 2 2 ASP A 26 ALA A 32 1 7 HELIX 3 3 GLY A 53 GLY A 69 1 17 HELIX 4 4 ASN A 96 ASP A 98 5 3 HELIX 5 5 SER B 7 GLU B 24 1 18 HELIX 6 6 ASP B 26 ALA B 32 1 7 HELIX 7 7 GLY B 53 GLY B 69 1 17 HELIX 8 8 ASN B 96 ASP B 98 5 3 SHEET 1 A 6 PHE A 51 ARG A 52 0 SHEET 2 A 6 PHE A 34 TYR A 41 -1 N HIS A 40 O PHE A 51 SHEET 3 A 6 ILE A 116 TYR A 123 1 O ILE A 119 N TYR A 41 SHEET 4 A 6 LYS A 99 PHE A 109 -1 N ALA A 104 O PHE A 122 SHEET 5 A 6 GLU A 85 LYS A 94 -1 N HIS A 92 O LEU A 101 SHEET 6 A 6 SER A 70 ASP A 80 -1 N TYR A 71 O PHE A 93 SHEET 1 B 5 PHE A 51 ARG A 52 0 SHEET 2 B 5 PHE A 34 TYR A 41 -1 N HIS A 40 O PHE A 51 SHEET 3 B 5 ILE A 116 TYR A 123 1 O ILE A 119 N TYR A 41 SHEET 4 B 5 LYS A 99 PHE A 109 -1 N ALA A 104 O PHE A 122 SHEET 5 B 5 ARG B 133 LEU B 134 1 O LEU B 134 N VAL A 100 SHEET 1 C 5 ARG A 133 LEU A 134 0 SHEET 2 C 5 LYS B 99 ASP B 110 1 O VAL B 100 N LEU A 134 SHEET 3 C 5 LEU B 115 TYR B 123 -1 O PHE B 122 N ALA B 104 SHEET 4 C 5 PHE B 34 TYR B 41 1 N TYR B 41 O ILE B 119 SHEET 5 C 5 PHE B 51 ARG B 52 -1 O PHE B 51 N HIS B 40 SHEET 1 D 4 ARG A 133 LEU A 134 0 SHEET 2 D 4 LYS B 99 ASP B 110 1 O VAL B 100 N LEU A 134 SHEET 3 D 4 GLU B 85 LYS B 94 -1 N HIS B 92 O LEU B 101 SHEET 4 D 4 SER B 70 ASP B 80 -1 N ASP B 80 O GLU B 85 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C ALA A 10 N MSE A 11 1555 1555 1.32 LINK C MSE A 11 N GLU A 12 1555 1555 1.33 LINK C LYS A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N ILE A 31 1555 1555 1.33 LINK C GLY A 45 N MSE A 46 1555 1555 1.33 LINK C MSE A 46 N TYR A 47 1555 1555 1.34 LINK C ALA B 10 N MSE B 11 1555 1555 1.33 LINK C MSE B 11 N GLU B 12 1555 1555 1.33 LINK C LYS B 29 N MSE B 30 1555 1555 1.33 LINK C MSE B 30 N ILE B 31 1555 1555 1.33 LINK C GLY B 45 N MSE B 46 1555 1555 1.34 LINK C MSE B 46 N TYR B 47 1555 1555 1.33 SITE 1 AC1 11 TYR A 19 CYS A 22 PHE A 42 TYR A 47 SITE 2 AC1 11 TRP A 61 TRP A 72 TRP A 90 HIS A 92 SITE 3 AC1 11 GLU A 105 TYR A 123 HOH A 194 SITE 1 AC2 3 ARG A 147 VAL A 148 THR A 149 SITE 1 AC3 3 SER A 150 LYS A 153 GOL A 161 SITE 1 AC4 4 SER A 7 ARG A 8 HOH A 204 HOH B 258 SITE 1 AC5 8 ALA A 32 ASP A 75 HOH A 208 HOH A 308 SITE 2 AC5 8 HOH A 372 ARG B 144 GLY B 145 TYR B 146 SITE 1 AC6 6 ARG A 133 LYS A 153 CL A 158 HOH A 300 SITE 2 AC6 6 HOH A 344 ASP B 98 SITE 1 AC7 11 HOH A 371 TYR B 19 CYS B 22 TYR B 47 SITE 2 AC7 11 TRP B 61 TRP B 72 TRP B 90 HIS B 92 SITE 3 AC7 11 GLU B 105 TYR B 123 HOH B 211 SITE 1 AC8 4 LYS A 13 VAL B 148 THR B 149 HOH B 247 CRYST1 48.560 68.450 107.460 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009306 0.00000 CONECT 3 5 CONECT 5 3 6 CONECT 6 5 7 9 CONECT 7 6 8 13 CONECT 8 7 CONECT 9 6 10 CONECT 10 9 11 CONECT 11 10 12 CONECT 12 11 CONECT 13 7 CONECT 87 90 CONECT 90 87 91 CONECT 91 90 92 94 CONECT 92 91 93 98 CONECT 93 92 CONECT 94 91 95 CONECT 95 94 96 CONECT 96 95 97 CONECT 97 96 CONECT 98 92 CONECT 258 270 CONECT 270 258 271 CONECT 271 270 272 274 CONECT 272 271 273 278 CONECT 273 272 CONECT 274 271 275 CONECT 275 274 276 CONECT 276 275 277 CONECT 277 276 CONECT 278 272 CONECT 390 392 CONECT 392 390 393 CONECT 393 392 394 396 CONECT 394 393 395 400 CONECT 395 394 CONECT 396 393 397 CONECT 397 396 398 CONECT 398 397 399 CONECT 399 398 CONECT 400 394 CONECT 1315 1318 CONECT 1318 1315 1319 1320 CONECT 1319 1318 1321 1323 CONECT 1320 1318 1321 1324 CONECT 1321 1319 1320 1322 1331 CONECT 1322 1321 CONECT 1323 1319 1325 CONECT 1324 1320 1326 CONECT 1325 1323 1327 CONECT 1326 1324 1328 CONECT 1327 1325 1329 CONECT 1328 1326 1330 CONECT 1329 1327 CONECT 1330 1328 CONECT 1331 1321 CONECT 1469 1481 CONECT 1481 1469 1482 CONECT 1482 1481 1483 1485 CONECT 1483 1482 1484 1489 CONECT 1484 1483 CONECT 1485 1482 1486 CONECT 1486 1485 1487 CONECT 1487 1486 1488 CONECT 1488 1487 CONECT 1489 1483 CONECT 1601 1603 CONECT 1603 1601 1604 CONECT 1604 1603 1605 1607 CONECT 1605 1604 1606 1611 CONECT 1606 1605 CONECT 1607 1604 1608 CONECT 1608 1607 1609 CONECT 1609 1608 1610 CONECT 1610 1609 CONECT 1611 1605 CONECT 2498 2499 2500 CONECT 2499 2498 CONECT 2500 2498 2501 2502 CONECT 2501 2500 CONECT 2502 2500 2503 CONECT 2503 2502 CONECT 2504 2505 2506 CONECT 2505 2504 CONECT 2506 2504 2507 2508 CONECT 2507 2506 CONECT 2508 2506 2509 CONECT 2509 2508 MASTER 399 0 15 8 20 0 14 6 2806 2 87 24 END