HEADER LYASE 30-JAN-09 3G1P TITLE CRYSTALS STRUCTURE OF PHNP FROM E.COLI K-12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PHNP; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B4092, JW4053, PHNP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PHNP, C-P LYASE, PHOSPHODIESTERASE, PHOSPHONATE UTILIZATION, KEYWDS 2 ALKYLPHOSPHONATE UPTAKE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.PODZELINSKA,Z.JIA REVDAT 2 21-FEB-24 3G1P 1 REMARK SEQADV LINK REVDAT 1 03-MAR-09 3G1P 0 JRNL AUTH K.PODZELINSKA,S.HE,M.WATHIER,A.YAKUNIN,M.PROUDFTOOT, JRNL AUTH 2 B.HOVE-JENSEN,D.ZECHEL,Z.JIA JRNL TITL CRYSTALS STRUCTURE OF PHNP FROM E.COLI K-12 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 98152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5171 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4965 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 286 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3883 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 882 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.919 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4015 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5478 ; 1.316 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 497 ; 6.042 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;39.117 ;23.548 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 599 ;11.397 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;14.780 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 594 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3152 ; 0.007 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2490 ; 0.815 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4018 ; 1.489 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1525 ; 2.168 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1460 ; 3.368 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109380 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 67.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 8.30000 REMARK 200 FOR THE DATA SET : 31.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 25.7000 REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, TRIS, S-MALATE, PEG 8000, PEG REMARK 280 400, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.82500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.70250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.82500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.70250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 251 REMARK 465 ALA A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 MET B 1 REMARK 465 ALA B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 HIS B 258 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 2 OG REMARK 470 VAL B 251 CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MN MN B 403 O HOH B 623 1.61 REMARK 500 O HOH A 634 O HOH A 636 1.80 REMARK 500 O HOH A 420 O HOH B 617 1.85 REMARK 500 O HOH A 650 O HOH A 681 1.91 REMARK 500 O HOH A 658 O HOH A 681 1.94 REMARK 500 O HOH A 598 O HOH A 606 2.03 REMARK 500 O HOH B 374 O HOH B 528 2.07 REMARK 500 O HOH B 311 O HOH B 652 2.07 REMARK 500 O HOH B 394 O HOH B 613 2.08 REMARK 500 O HOH B 565 O HOH B 614 2.09 REMARK 500 O HOH A 603 O HOH A 610 2.09 REMARK 500 O HOH A 286 O HOH A 682 2.11 REMARK 500 O HOH A 534 O HOH A 645 2.12 REMARK 500 O HOH A 393 O HOH A 452 2.14 REMARK 500 ND2 ASN B 142 O ALA B 166 2.16 REMARK 500 O HOH B 508 O HOH B 615 2.16 REMARK 500 O HOH B 428 O HOH B 614 2.17 REMARK 500 O HOH A 341 O HOH A 550 2.17 REMARK 500 O HOH A 285 O HOH A 423 2.18 REMARK 500 O HOH A 421 O HOH A 467 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 47 -121.87 55.02 REMARK 500 ASP A 54 173.97 62.46 REMARK 500 ALA A 55 47.65 -150.22 REMARK 500 ASP A 108 -133.72 48.50 REMARK 500 ASP A 195 -125.96 -119.11 REMARK 500 ALA A 196 -135.63 41.28 REMARK 500 ASN B 47 -122.18 56.75 REMARK 500 ASP B 54 170.03 65.97 REMARK 500 ALA B 55 46.52 -147.80 REMARK 500 ASP B 108 -131.90 45.00 REMARK 500 HIS B 156 8.49 58.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 21 SG REMARK 620 2 CYS A 23 SG 110.7 REMARK 620 3 CYS A 26 SG 114.6 109.1 REMARK 620 4 HIS A 225 ND1 104.7 114.7 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 400 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 164 OD2 REMARK 620 2 MLT A 500 O3 90.7 REMARK 620 3 MLT A 500 O1 84.8 68.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 164 OD2 REMARK 620 2 HOH A 573 O 114.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 21 SG REMARK 620 2 CYS B 23 SG 110.2 REMARK 620 3 CYS B 26 SG 113.7 110.2 REMARK 620 4 HIS B 225 ND1 105.6 112.6 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 164 OD2 REMARK 620 2 MLT B 501 O1 84.6 REMARK 620 3 MLT B 501 O3 91.8 68.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLT A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLT B 501 DBREF 3G1P A 1 252 UNP P16692 PHNP_ECOLI 1 252 DBREF 3G1P B 1 252 UNP P16692 PHNP_ECOLI 1 252 SEQADV 3G1P HIS A 253 UNP P16692 EXPRESSION TAG SEQADV 3G1P HIS A 254 UNP P16692 EXPRESSION TAG SEQADV 3G1P HIS A 255 UNP P16692 EXPRESSION TAG SEQADV 3G1P HIS A 256 UNP P16692 EXPRESSION TAG SEQADV 3G1P HIS A 257 UNP P16692 EXPRESSION TAG SEQADV 3G1P HIS A 258 UNP P16692 EXPRESSION TAG SEQADV 3G1P HIS B 253 UNP P16692 EXPRESSION TAG SEQADV 3G1P HIS B 254 UNP P16692 EXPRESSION TAG SEQADV 3G1P HIS B 255 UNP P16692 EXPRESSION TAG SEQADV 3G1P HIS B 256 UNP P16692 EXPRESSION TAG SEQADV 3G1P HIS B 257 UNP P16692 EXPRESSION TAG SEQADV 3G1P HIS B 258 UNP P16692 EXPRESSION TAG SEQRES 1 A 258 MET SER LEU THR LEU THR LEU THR GLY THR GLY GLY ALA SEQRES 2 A 258 GLN GLY VAL PRO ALA TRP GLY CYS GLU CYS ALA ALA CYS SEQRES 3 A 258 ALA ARG ALA ARG ARG SER PRO GLN TYR ARG ARG GLN PRO SEQRES 4 A 258 CYS SER GLY VAL VAL LYS PHE ASN ASP ALA ILE THR LEU SEQRES 5 A 258 ILE ASP ALA GLY LEU HIS ASP LEU ALA ASP ARG TRP SER SEQRES 6 A 258 PRO GLY SER PHE GLN GLN PHE LEU LEU THR HIS TYR HIS SEQRES 7 A 258 MET ASP HIS VAL GLN GLY LEU PHE PRO LEU ARG TRP GLY SEQRES 8 A 258 VAL GLY ASP PRO ILE PRO VAL TYR GLY PRO PRO ASP GLU SEQRES 9 A 258 GLN GLY CYS ASP ASP LEU PHE LYS HIS PRO GLY LEU LEU SEQRES 10 A 258 ASP PHE SER HIS THR VAL GLU PRO PHE VAL VAL PHE ASP SEQRES 11 A 258 LEU GLN GLY LEU GLN VAL THR PRO LEU PRO LEU ASN HIS SEQRES 12 A 258 SER LYS LEU THR PHE GLY TYR LEU LEU GLU THR ALA HIS SEQRES 13 A 258 SER ARG VAL ALA TRP LEU SER ASP THR ALA GLY LEU PRO SEQRES 14 A 258 GLU LYS THR LEU LYS PHE LEU ARG ASN ASN GLN PRO GLN SEQRES 15 A 258 VAL MET VAL MET ASP CYS SER HIS PRO PRO ARG ALA ASP SEQRES 16 A 258 ALA PRO ARG ASN HIS CYS ASP LEU ASN THR VAL LEU ALA SEQRES 17 A 258 LEU ASN GLN VAL ILE ARG SER PRO ARG VAL ILE LEU THR SEQRES 18 A 258 HIS ILE SER HIS GLN PHE ASP ALA TRP LEU MET GLU ASN SEQRES 19 A 258 ALA LEU PRO SER GLY PHE GLU VAL GLY PHE ASP GLY MET SEQRES 20 A 258 GLU ILE GLY VAL ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 258 MET SER LEU THR LEU THR LEU THR GLY THR GLY GLY ALA SEQRES 2 B 258 GLN GLY VAL PRO ALA TRP GLY CYS GLU CYS ALA ALA CYS SEQRES 3 B 258 ALA ARG ALA ARG ARG SER PRO GLN TYR ARG ARG GLN PRO SEQRES 4 B 258 CYS SER GLY VAL VAL LYS PHE ASN ASP ALA ILE THR LEU SEQRES 5 B 258 ILE ASP ALA GLY LEU HIS ASP LEU ALA ASP ARG TRP SER SEQRES 6 B 258 PRO GLY SER PHE GLN GLN PHE LEU LEU THR HIS TYR HIS SEQRES 7 B 258 MET ASP HIS VAL GLN GLY LEU PHE PRO LEU ARG TRP GLY SEQRES 8 B 258 VAL GLY ASP PRO ILE PRO VAL TYR GLY PRO PRO ASP GLU SEQRES 9 B 258 GLN GLY CYS ASP ASP LEU PHE LYS HIS PRO GLY LEU LEU SEQRES 10 B 258 ASP PHE SER HIS THR VAL GLU PRO PHE VAL VAL PHE ASP SEQRES 11 B 258 LEU GLN GLY LEU GLN VAL THR PRO LEU PRO LEU ASN HIS SEQRES 12 B 258 SER LYS LEU THR PHE GLY TYR LEU LEU GLU THR ALA HIS SEQRES 13 B 258 SER ARG VAL ALA TRP LEU SER ASP THR ALA GLY LEU PRO SEQRES 14 B 258 GLU LYS THR LEU LYS PHE LEU ARG ASN ASN GLN PRO GLN SEQRES 15 B 258 VAL MET VAL MET ASP CYS SER HIS PRO PRO ARG ALA ASP SEQRES 16 B 258 ALA PRO ARG ASN HIS CYS ASP LEU ASN THR VAL LEU ALA SEQRES 17 B 258 LEU ASN GLN VAL ILE ARG SER PRO ARG VAL ILE LEU THR SEQRES 18 B 258 HIS ILE SER HIS GLN PHE ASP ALA TRP LEU MET GLU ASN SEQRES 19 B 258 ALA LEU PRO SER GLY PHE GLU VAL GLY PHE ASP GLY MET SEQRES 20 B 258 GLU ILE GLY VAL ALA HIS HIS HIS HIS HIS HIS HET ZN A 300 1 HET MN A 400 1 HET MN A 401 1 HET MLT A 500 9 HET ZN B 301 1 HET MN B 402 1 HET MN B 403 1 HET MLT B 501 9 HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION HETNAM MLT D-MALATE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MN 4(MN 2+) FORMUL 6 MLT 2(C4 H6 O5) FORMUL 11 HOH *882(H2 O) HELIX 1 1 CYS A 23 SER A 32 1 10 HELIX 2 2 PRO A 33 ARG A 36 5 4 HELIX 3 3 ASP A 59 TRP A 64 1 6 HELIX 4 4 HIS A 78 GLN A 83 1 6 HELIX 5 5 GLY A 84 PHE A 86 5 3 HELIX 6 6 PRO A 169 ASN A 179 1 11 HELIX 7 7 ASP A 202 ARG A 214 1 13 HELIX 8 8 SER A 224 MET A 232 1 9 HELIX 9 9 CYS B 23 SER B 32 1 10 HELIX 10 10 PRO B 33 ARG B 36 5 4 HELIX 11 11 ASP B 59 TRP B 64 1 6 HELIX 12 12 HIS B 78 GLN B 83 1 6 HELIX 13 13 GLY B 84 PHE B 86 5 3 HELIX 14 14 PRO B 169 ASN B 179 1 11 HELIX 15 15 ASP B 202 ARG B 214 1 13 HELIX 16 16 SER B 224 MET B 232 1 9 SHEET 1 A 7 LEU A 117 THR A 122 0 SHEET 2 A 7 ILE A 96 GLY A 100 1 N ILE A 96 O ASP A 118 SHEET 3 A 7 GLN A 71 LEU A 73 1 N PHE A 72 O TYR A 99 SHEET 4 A 7 ALA A 49 ILE A 53 1 N LEU A 52 O LEU A 73 SHEET 5 A 7 SER A 41 PHE A 46 -1 N VAL A 44 O THR A 51 SHEET 6 A 7 LEU A 3 GLY A 9 -1 N THR A 6 O VAL A 43 SHEET 7 A 7 MET A 247 ILE A 249 -1 O ILE A 249 N LEU A 5 SHEET 1 B 7 PHE A 129 LEU A 131 0 SHEET 2 B 7 LEU A 134 PRO A 140 -1 O VAL A 136 N PHE A 129 SHEET 3 B 7 PHE A 148 GLU A 153 -1 O GLY A 149 N LEU A 139 SHEET 4 B 7 ARG A 158 LEU A 162 -1 O VAL A 159 N LEU A 152 SHEET 5 B 7 VAL A 183 ASP A 187 1 O VAL A 185 N LEU A 162 SHEET 6 B 7 VAL A 218 THR A 221 1 O ILE A 219 N MET A 184 SHEET 7 B 7 PHE A 240 VAL A 242 1 O GLU A 241 N LEU A 220 SHEET 1 C 7 LEU B 117 THR B 122 0 SHEET 2 C 7 ILE B 96 GLY B 100 1 N ILE B 96 O ASP B 118 SHEET 3 C 7 GLN B 71 LEU B 73 1 N PHE B 72 O TYR B 99 SHEET 4 C 7 ALA B 49 ILE B 53 1 N LEU B 52 O LEU B 73 SHEET 5 C 7 SER B 41 PHE B 46 -1 N VAL B 44 O THR B 51 SHEET 6 C 7 LEU B 3 GLY B 9 -1 N THR B 4 O LYS B 45 SHEET 7 C 7 MET B 247 ILE B 249 -1 O ILE B 249 N LEU B 5 SHEET 1 D 7 PHE B 129 LEU B 131 0 SHEET 2 D 7 LEU B 134 PRO B 140 -1 O VAL B 136 N PHE B 129 SHEET 3 D 7 PHE B 148 THR B 154 -1 O GLY B 149 N LEU B 139 SHEET 4 D 7 SER B 157 LEU B 162 -1 O VAL B 159 N LEU B 152 SHEET 5 D 7 VAL B 183 ASP B 187 1 O VAL B 185 N LEU B 162 SHEET 6 D 7 VAL B 218 THR B 221 1 O ILE B 219 N MET B 184 SHEET 7 D 7 PHE B 240 VAL B 242 1 O GLU B 241 N LEU B 220 LINK SG CYS A 21 ZN ZN A 300 1555 1555 2.29 LINK SG CYS A 23 ZN ZN A 300 1555 1555 2.27 LINK SG CYS A 26 ZN ZN A 300 1555 1555 2.31 LINK OD2 ASP A 164 MN MN A 400 1555 1555 2.26 LINK OD2 ASP A 164 MN MN A 401 1555 1555 2.14 LINK ND1 HIS A 225 ZN ZN A 300 1555 1555 2.13 LINK MN MN A 400 O3 MLT A 500 1555 1555 2.21 LINK MN MN A 400 O1 MLT A 500 1555 1555 2.27 LINK MN MN A 401 O HOH A 573 1555 1555 1.77 LINK SG CYS B 21 ZN ZN B 301 1555 1555 2.31 LINK SG CYS B 23 ZN ZN B 301 1555 1555 2.32 LINK SG CYS B 26 ZN ZN B 301 1555 1555 2.30 LINK OD2 ASP B 164 MN MN B 402 1555 1555 2.27 LINK OD2 ASP B 164 MN MN B 403 1555 1555 2.00 LINK ND1 HIS B 225 ZN ZN B 301 1555 1555 2.08 LINK MN MN B 402 O1 MLT B 501 1555 1555 2.22 LINK MN MN B 402 O3 MLT B 501 1555 1555 2.28 CISPEP 1 VAL A 16 PRO A 17 0 1.61 CISPEP 2 SER A 163 ASP A 164 0 -2.92 CISPEP 3 ALA A 194 ASP A 195 0 -0.56 CISPEP 4 ALA A 196 PRO A 197 0 -1.28 CISPEP 5 VAL B 16 PRO B 17 0 0.54 CISPEP 6 SER B 163 ASP B 164 0 -4.98 SITE 1 AC1 4 CYS A 21 CYS A 23 CYS A 26 HIS A 225 SITE 1 AC2 6 HIS A 76 HIS A 78 HIS A 143 ASP A 164 SITE 2 AC2 6 MN A 401 MLT A 500 SITE 1 AC3 8 ASP A 80 HIS A 81 ASP A 164 HIS A 222 SITE 2 AC3 8 HOH A 320 MN A 400 MLT A 500 HOH A 573 SITE 1 AC4 14 HIS A 76 HIS A 78 ASP A 80 HIS A 143 SITE 2 AC4 14 ASP A 164 HIS A 200 HOH A 324 HOH A 391 SITE 3 AC4 14 MN A 400 MN A 401 HOH A 486 HOH A 573 SITE 4 AC4 14 HOH B 265 HOH B 509 SITE 1 AC5 4 CYS B 21 CYS B 23 CYS B 26 HIS B 225 SITE 1 AC6 6 HIS B 76 HIS B 78 HIS B 143 ASP B 164 SITE 2 AC6 6 MN B 403 MLT B 501 SITE 1 AC7 7 ASP B 80 HIS B 81 ASP B 164 HIS B 222 SITE 2 AC7 7 MN B 402 MLT B 501 HOH B 623 SITE 1 AC8 16 HOH A 338 HOH A 612 HIS B 76 HIS B 78 SITE 2 AC8 16 ASP B 80 HIS B 143 ASP B 164 HIS B 200 SITE 3 AC8 16 HOH B 339 HOH B 356 MN B 402 MN B 403 SITE 4 AC8 16 HOH B 529 HOH B 575 HOH B 613 HOH B 623 CRYST1 111.650 75.405 83.228 90.00 126.33 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008957 0.000000 0.006586 0.00000 SCALE2 0.000000 0.013262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014914 0.00000