HEADER TRANSPORT PROTEIN 30-JAN-09 3G1W TITLE CRYSTAL STRUCTURE OF SUGAR ABC TRANSPORTER (SUGAR-BINDING PROTEIN) TITLE 2 FROM BACILLUS HALODURANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR ABC TRANSPORTER; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 42-333; COMPND 5 SYNONYM: SUGAR-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS C-125; SOURCE 3 ORGANISM_TAXID: 272558; SOURCE 4 STRAIN: C-125 / DSM 18197 / FERM 7344 / JCM 9153; SOURCE 5 ATCC: BAA-125; SOURCE 6 GENE: BH3448; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3 KEYWDS SUGAR ABC TRANSPORTER, SUGAR-BINDING PROTEIN, BACILLUS HALODURANS, KEYWDS 2 TARGET 11229F, TRANSPORT PROTEIN, STRUCTURAL GENOMICS, PSI-2, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 4 STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,S.ESWARAMOORTHY,S.SWAMINATHAN,S.K.BURLEY,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 3 10-FEB-21 3G1W 1 AUTHOR JRNL SEQADV LINK REVDAT 2 13-JUL-11 3G1W 1 VERSN REVDAT 1 17-FEB-09 3G1W 0 JRNL AUTH Z.ZHANG,S.ESWARAMOORTHY,S.SWAMINATHAN,S.K.BURLEY JRNL TITL THE CRYSTAL STRUCTURE OF SUGAR ABC TRANSPORTER JRNL TITL 2 (SUGAR-BINDING PROTEIN) FROM BACILLUS HALODURANS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1760 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4470 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.227 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.949 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4558 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6210 ; 1.805 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 578 ; 7.232 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;35.526 ;25.516 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 712 ;16.739 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.387 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 704 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3527 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2184 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3170 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 269 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2955 ; 1.315 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4607 ; 1.849 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1835 ; 3.315 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1603 ; 4.759 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 300 REMARK 3 RESIDUE RANGE : B 42 B 300 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3210 42.0200 54.0560 REMARK 3 T TENSOR REMARK 3 T11: 0.0111 T22: -0.1042 REMARK 3 T33: -0.0082 T12: 0.0052 REMARK 3 T13: -0.0098 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.5421 L22: 0.1666 REMARK 3 L33: 0.7358 L12: 0.1070 REMARK 3 L13: -0.1857 L23: 0.0545 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: 0.0571 S13: -0.0962 REMARK 3 S21: 0.0137 S22: 0.0251 S23: -0.0109 REMARK 3 S31: 0.0095 S32: 0.0044 S33: -0.0098 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. RESIDUES LISTED AS MISSING IN REMARK 465 REMARK 3 ARE DUE TO LACK OF ELECTRON DENSITY. RESIDUES WITH MISSING ATOMS REMARK 3 LISTED IN REMARK 470 ARE DUE TO LACK OF ELECTRON DENSITY FOR REMARK 3 SIDE CHAINS AND MODELED AS ALANINES. PROGRAM PHENIX.REFINE HAS REMARK 3 ALSO BEEN USED IN REFINEMENT. REMARK 4 REMARK 4 3G1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33281 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CALCIUM CHLORIDE DIHYDRATE, 0.1 REMARK 280 M BIS-TRIS PH 6.5, 30% V/V PEG 550, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.22850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.79100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.93200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.79100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.22850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.93200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 39 REMARK 465 SER A 40 REMARK 465 LEU A 41 REMARK 465 ASN A 42 REMARK 465 ALA A 334 REMARK 465 ASP A 335 REMARK 465 GLU A 336 REMARK 465 GLY A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 MSE B 39 REMARK 465 SER B 40 REMARK 465 LEU B 41 REMARK 465 GLN B 306 REMARK 465 THR B 307 REMARK 465 ALA B 334 REMARK 465 ASP B 335 REMARK 465 GLU B 336 REMARK 465 GLY B 337 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 305 CG CD1 CD2 REMARK 470 ARG B 308 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 315 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 327 NZ LYS B 262 2665 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 45 CD1 TYR B 45 CE1 0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 113 CA - CB - CG ANGL. DEV. = -19.4 DEGREES REMARK 500 LEU A 289 CA - CB - CG ANGL. DEV. = -17.6 DEGREES REMARK 500 LEU B 113 CB - CG - CD2 ANGL. DEV. = -14.9 DEGREES REMARK 500 LEU B 289 CA - CB - CG ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 131 -64.22 69.18 REMARK 500 ALA A 134 79.60 -158.05 REMARK 500 ARG A 206 18.85 50.95 REMARK 500 SER A 257 -165.05 -120.44 REMARK 500 ASP A 259 178.32 73.29 REMARK 500 ARG A 308 11.12 59.25 REMARK 500 THR B 49 -167.50 -127.67 REMARK 500 GLN B 51 60.59 38.80 REMARK 500 ASP B 131 -67.25 71.66 REMARK 500 SER B 141 160.70 169.06 REMARK 500 ALA B 201 138.49 175.73 REMARK 500 ARG B 206 11.26 58.00 REMARK 500 ALA B 250 36.72 -51.25 REMARK 500 ASP B 259 180.00 73.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 250 GLY A 251 -48.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11229F RELATED DB: TARGETDB DBREF 3G1W A 42 335 UNP Q9K7B8 Q9K7B8_BACHD 42 335 DBREF 3G1W B 42 335 UNP Q9K7B8 Q9K7B8_BACHD 42 335 SEQADV 3G1W MSE A 39 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W SER A 40 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W LEU A 41 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W GLU A 336 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W GLY A 337 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W HIS A 338 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W HIS A 339 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W HIS A 340 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W HIS A 341 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W HIS A 342 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W HIS A 343 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W MSE B 39 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W SER B 40 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W LEU B 41 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W GLU B 336 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W GLY B 337 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W HIS B 338 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W HIS B 339 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W HIS B 340 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W HIS B 341 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W HIS B 342 UNP Q9K7B8 EXPRESSION TAG SEQADV 3G1W HIS B 343 UNP Q9K7B8 EXPRESSION TAG SEQRES 1 A 305 MSE SER LEU ASN GLU THR TYR MSE MSE ILE THR PHE GLN SEQRES 2 A 305 SER GLY MSE ASP TYR TRP LYS ARG CYS LEU LYS GLY PHE SEQRES 3 A 305 GLU ASP ALA ALA GLN ALA LEU ASN VAL THR VAL GLU TYR SEQRES 4 A 305 ARG GLY ALA ALA GLN TYR ASP ILE GLN GLU GLN ILE THR SEQRES 5 A 305 VAL LEU GLU GLN ALA ILE ALA LYS ASN PRO ALA GLY ILE SEQRES 6 A 305 ALA ILE SER ALA ILE ASP PRO VAL GLU LEU THR ASP THR SEQRES 7 A 305 ILE ASN LYS ALA VAL ASP ALA GLY ILE PRO ILE VAL LEU SEQRES 8 A 305 PHE ASP SER GLY ALA PRO ASP SER HIS ALA HIS SER PHE SEQRES 9 A 305 LEU GLY THR ASN ASN TYR ASN ALA GLY MSE ASN ALA ALA SEQRES 10 A 305 TYR LYS MSE ALA GLU LEU LEU ASP GLY GLU GLY GLU VAL SEQRES 11 A 305 ALA VAL ILE THR LEU PRO ASN GLN LEU ASN HIS GLN GLU SEQRES 12 A 305 ARG THR THR GLY PHE LYS GLU THR LEU GLU ALA GLU PHE SEQRES 13 A 305 PRO ALA ILE GLU VAL ILE ALA VAL GLU ASP GLY ARG GLY SEQRES 14 A 305 ASP SER LEU HIS SER ARG ARG VAL ALA HIS GLN LEU LEU SEQRES 15 A 305 GLU ASP TYR PRO ASN LEU ALA GLY ILE PHE ALA THR GLU SEQRES 16 A 305 ALA ASN GLY GLY VAL GLY VAL GLY ASP ALA VAL ARG LEU SEQRES 17 A 305 GLU SER ARG ALA GLY GLU ILE GLN ILE ILE SER PHE ASP SEQRES 18 A 305 THR ASP LYS GLY THR LEU ASP LEU VAL ASP GLU GLY ILE SEQRES 19 A 305 ILE SER ALA THR LEU ALA GLN GLY THR TRP ASN MSE GLY SEQRES 20 A 305 TYR TRP SER LEU THR TYR LEU PHE HIS LEU HIS HIS GLY SEQRES 21 A 305 LEU THR GLU PRO GLN ILE LEU GLN THR ARG GLU GLU ALA SEQRES 22 A 305 PRO LEU PRO LEU TYR VAL ASP THR GLY ILE THR ILE VAL SEQRES 23 A 305 THR ASP GLU ASN VAL ASP TYR TYR TYR ALA ASP GLU GLY SEQRES 24 A 305 HIS HIS HIS HIS HIS HIS SEQRES 1 B 305 MSE SER LEU ASN GLU THR TYR MSE MSE ILE THR PHE GLN SEQRES 2 B 305 SER GLY MSE ASP TYR TRP LYS ARG CYS LEU LYS GLY PHE SEQRES 3 B 305 GLU ASP ALA ALA GLN ALA LEU ASN VAL THR VAL GLU TYR SEQRES 4 B 305 ARG GLY ALA ALA GLN TYR ASP ILE GLN GLU GLN ILE THR SEQRES 5 B 305 VAL LEU GLU GLN ALA ILE ALA LYS ASN PRO ALA GLY ILE SEQRES 6 B 305 ALA ILE SER ALA ILE ASP PRO VAL GLU LEU THR ASP THR SEQRES 7 B 305 ILE ASN LYS ALA VAL ASP ALA GLY ILE PRO ILE VAL LEU SEQRES 8 B 305 PHE ASP SER GLY ALA PRO ASP SER HIS ALA HIS SER PHE SEQRES 9 B 305 LEU GLY THR ASN ASN TYR ASN ALA GLY MSE ASN ALA ALA SEQRES 10 B 305 TYR LYS MSE ALA GLU LEU LEU ASP GLY GLU GLY GLU VAL SEQRES 11 B 305 ALA VAL ILE THR LEU PRO ASN GLN LEU ASN HIS GLN GLU SEQRES 12 B 305 ARG THR THR GLY PHE LYS GLU THR LEU GLU ALA GLU PHE SEQRES 13 B 305 PRO ALA ILE GLU VAL ILE ALA VAL GLU ASP GLY ARG GLY SEQRES 14 B 305 ASP SER LEU HIS SER ARG ARG VAL ALA HIS GLN LEU LEU SEQRES 15 B 305 GLU ASP TYR PRO ASN LEU ALA GLY ILE PHE ALA THR GLU SEQRES 16 B 305 ALA ASN GLY GLY VAL GLY VAL GLY ASP ALA VAL ARG LEU SEQRES 17 B 305 GLU SER ARG ALA GLY GLU ILE GLN ILE ILE SER PHE ASP SEQRES 18 B 305 THR ASP LYS GLY THR LEU ASP LEU VAL ASP GLU GLY ILE SEQRES 19 B 305 ILE SER ALA THR LEU ALA GLN GLY THR TRP ASN MSE GLY SEQRES 20 B 305 TYR TRP SER LEU THR TYR LEU PHE HIS LEU HIS HIS GLY SEQRES 21 B 305 LEU THR GLU PRO GLN ILE LEU GLN THR ARG GLU GLU ALA SEQRES 22 B 305 PRO LEU PRO LEU TYR VAL ASP THR GLY ILE THR ILE VAL SEQRES 23 B 305 THR ASP GLU ASN VAL ASP TYR TYR TYR ALA ASP GLU GLY SEQRES 24 B 305 HIS HIS HIS HIS HIS HIS MODRES 3G1W MSE A 46 MET SELENOMETHIONINE MODRES 3G1W MSE A 47 MET SELENOMETHIONINE MODRES 3G1W MSE A 54 MET SELENOMETHIONINE MODRES 3G1W MSE A 152 MET SELENOMETHIONINE MODRES 3G1W MSE A 158 MET SELENOMETHIONINE MODRES 3G1W MSE A 284 MET SELENOMETHIONINE MODRES 3G1W MSE B 46 MET SELENOMETHIONINE MODRES 3G1W MSE B 47 MET SELENOMETHIONINE MODRES 3G1W MSE B 54 MET SELENOMETHIONINE MODRES 3G1W MSE B 152 MET SELENOMETHIONINE MODRES 3G1W MSE B 158 MET SELENOMETHIONINE MODRES 3G1W MSE B 284 MET SELENOMETHIONINE HET MSE A 46 8 HET MSE A 47 8 HET MSE A 54 8 HET MSE A 152 8 HET MSE A 158 8 HET MSE A 284 8 HET MSE B 46 8 HET MSE B 47 8 HET MSE B 54 8 HET MSE B 152 8 HET MSE B 158 8 HET MSE B 284 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HOH *229(H2 O) HELIX 1 1 ASP A 55 ASN A 72 1 18 HELIX 2 2 ASP A 84 ASN A 99 1 16 HELIX 3 3 LEU A 113 ALA A 123 1 11 HELIX 4 4 ASN A 146 LEU A 162 1 17 HELIX 5 5 GLN A 176 PHE A 194 1 19 HELIX 6 6 ASP A 208 TYR A 223 1 16 HELIX 7 7 GLU A 233 GLU A 247 1 15 HELIX 8 8 ASP A 261 GLU A 270 1 10 HELIX 9 9 GLY A 280 HIS A 297 1 18 HELIX 10 10 ASN A 328 TYR A 333 5 6 HELIX 11 11 ASP B 55 ASN B 72 1 18 HELIX 12 12 ASP B 84 ASN B 99 1 16 HELIX 13 13 LEU B 113 ALA B 123 1 11 HELIX 14 14 ASN B 146 LEU B 162 1 17 HELIX 15 15 GLN B 176 PHE B 194 1 19 HELIX 16 16 ASP B 208 TYR B 223 1 16 HELIX 17 17 GLU B 233 GLU B 247 1 15 HELIX 18 18 ASP B 261 GLU B 270 1 10 HELIX 19 19 GLY B 280 HIS B 297 1 18 HELIX 20 20 ASN B 328 TYR B 333 5 6 SHEET 1 A12 THR A 74 GLY A 79 0 SHEET 2 A12 THR A 44 THR A 49 1 N TYR A 45 O THR A 74 SHEET 3 A12 GLY A 102 ILE A 105 1 O ALA A 104 N ILE A 48 SHEET 4 A12 ILE A 127 PHE A 130 1 O VAL A 128 N ILE A 103 SHEET 5 A12 PHE A 142 GLY A 144 1 O LEU A 143 N LEU A 129 SHEET 6 A12 TYR A 316 ASP A 318 1 O VAL A 317 N PHE A 142 SHEET 7 A12 TYR B 316 ASP B 318 -1 O ASP B 318 N TYR A 316 SHEET 8 A12 PHE B 142 GLY B 144 1 N PHE B 142 O VAL B 317 SHEET 9 A12 ILE B 127 PHE B 130 1 N LEU B 129 O LEU B 143 SHEET 10 A12 GLY B 102 ILE B 105 1 N ILE B 105 O VAL B 128 SHEET 11 A12 THR B 44 PHE B 50 1 N MSE B 46 O GLY B 102 SHEET 12 A12 THR B 74 ALA B 80 1 O ARG B 78 N MSE B 47 SHEET 1 B 6 ILE A 197 ASP A 204 0 SHEET 2 B 6 GLY A 166 THR A 172 1 N THR A 172 O GLU A 203 SHEET 3 B 6 LEU A 226 ALA A 231 1 O ALA A 227 N GLU A 167 SHEET 4 B 6 GLN A 254 PHE A 258 1 O ILE A 256 N ALA A 231 SHEET 5 B 6 ALA A 275 GLN A 279 1 O ALA A 275 N SER A 257 SHEET 6 B 6 ILE A 321 VAL A 324 -1 O THR A 322 N ALA A 278 SHEET 1 C 2 GLN A 303 ILE A 304 0 SHEET 2 C 2 GLU A 310 ALA A 311 -1 O ALA A 311 N GLN A 303 SHEET 1 D 6 ILE B 197 ASP B 204 0 SHEET 2 D 6 GLY B 166 THR B 172 1 N THR B 172 O GLU B 203 SHEET 3 D 6 LEU B 226 ALA B 231 1 O ALA B 227 N GLU B 167 SHEET 4 D 6 GLN B 254 PHE B 258 1 O GLN B 254 N ALA B 227 SHEET 5 D 6 ALA B 275 GLN B 279 1 O ALA B 275 N SER B 257 SHEET 6 D 6 ILE B 321 VAL B 324 -1 O THR B 322 N ALA B 278 LINK C TYR A 45 N MSE A 46 1555 1555 1.31 LINK C MSE A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N ILE A 48 1555 1555 1.34 LINK C GLY A 53 N MSE A 54 1555 1555 1.33 LINK C MSE A 54 N ASP A 55 1555 1555 1.35 LINK C GLY A 151 N MSE A 152 1555 1555 1.32 LINK C MSE A 152 N ASN A 153 1555 1555 1.33 LINK C LYS A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N ALA A 159 1555 1555 1.33 LINK C ASN A 283 N MSE A 284 1555 1555 1.34 LINK C MSE A 284 N GLY A 285 1555 1555 1.33 LINK C TYR B 45 N MSE B 46 1555 1555 1.31 LINK C MSE B 46 N MSE B 47 1555 1555 1.32 LINK C MSE B 47 N ILE B 48 1555 1555 1.33 LINK C GLY B 53 N MSE B 54 1555 1555 1.33 LINK C MSE B 54 N ASP B 55 1555 1555 1.34 LINK C GLY B 151 N MSE B 152 1555 1555 1.34 LINK C MSE B 152 N ASN B 153 1555 1555 1.34 LINK C LYS B 157 N MSE B 158 1555 1555 1.33 LINK C MSE B 158 N ALA B 159 1555 1555 1.33 LINK C ASN B 283 N MSE B 284 1555 1555 1.33 LINK C MSE B 284 N GLY B 285 1555 1555 1.34 CRYST1 60.457 87.864 113.582 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016541 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008804 0.00000