HEADER TRANSFERASE 31-JAN-09 3G2M TITLE CRYSTAL STRUCTURE OF THE GLYCOPEPTIDE N-METHYLTRANSFERASE MTFA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PCZA361.24; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS; SOURCE 3 ORGANISM_TAXID: 31958; SOURCE 4 GENE: MTFA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SAM-DEPENDENT METHYLTRANSFERASE, GLYCOPEPTIDE ANTIBIOTICS KEYWDS 2 BIOSYNTHESIS, STRUCTURAL GENOMICS, MONTREAL-KINGSTON BACTERIAL KEYWDS 3 STRUCTURAL GENOMICS INITIATIVE, BSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SHI,A.MATTE,M.CYGLER,MONTREAL-KINGSTON BACTERIAL STRUCTURAL AUTHOR 2 GENOMICS INITIATIVE (BSGI) REVDAT 3 01-NOV-17 3G2M 1 REMARK REVDAT 2 13-JUL-11 3G2M 1 VERSN REVDAT 1 05-MAY-09 3G2M 0 JRNL AUTH R.SHI,S.S.LAMB,B.ZAKERI,A.PROTEAU,Q.CUI,T.SULEA,A.MATTE, JRNL AUTH 2 G.D.WRIGHT,M.CYGLER JRNL TITL STRUCTURE AND FUNCTION OF THE GLYCOPEPTIDE JRNL TITL 2 N-METHYLTRANSFERASE MTFA, A TOOL FOR THE BIOSYNTHESIS OF JRNL TITL 3 MODIFIED GLYCOPEPTIDE ANTIBIOTICS. JRNL REF CHEM.BIOL. V. 16 401 2009 JRNL REFN ISSN 1074-5521 JRNL PMID 19389626 JRNL DOI 10.1016/J.CHEMBIOL.2009.02.007 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 44333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2239 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2767 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3406 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.31000 REMARK 3 B22 (A**2) : 1.78000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.184 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3490 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4724 ; 1.054 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 5.224 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;33.653 ;22.468 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 581 ;14.524 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;17.386 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2639 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1407 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2319 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 215 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.172 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2315 ; 0.675 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3561 ; 0.908 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1314 ; 1.214 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1159 ; 1.830 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 175 REMARK 3 RESIDUE RANGE : A 235 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2707 64.9566 34.5536 REMARK 3 T TENSOR REMARK 3 T11: -0.1131 T22: -0.1056 REMARK 3 T33: -0.0402 T12: -0.0003 REMARK 3 T13: -0.0136 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.6132 L22: 1.7313 REMARK 3 L33: 1.3729 L12: -0.1750 REMARK 3 L13: 0.9261 L23: -0.5843 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.0320 S13: 0.1477 REMARK 3 S21: 0.0419 S22: -0.0845 S23: -0.2458 REMARK 3 S31: -0.0319 S32: 0.0566 S33: 0.1189 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 18 REMARK 3 RESIDUE RANGE : B 206 B 234 REMARK 3 RESIDUE RANGE : A 176 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1794 72.7561 17.8647 REMARK 3 T TENSOR REMARK 3 T11: -0.0847 T22: -0.0366 REMARK 3 T33: 0.2219 T12: 0.0846 REMARK 3 T13: 0.0279 T23: 0.0743 REMARK 3 L TENSOR REMARK 3 L11: 11.0352 L22: 7.3009 REMARK 3 L33: 1.7313 L12: 6.5040 REMARK 3 L13: -2.0554 L23: -1.5653 REMARK 3 S TENSOR REMARK 3 S11: 0.2414 S12: 0.4823 S13: 2.0443 REMARK 3 S21: 0.2104 S22: 0.0697 S23: 1.3597 REMARK 3 S31: -0.2284 S32: -0.2476 S33: -0.3111 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 32 REMARK 3 RESIDUE RANGE : A 206 A 234 REMARK 3 RESIDUE RANGE : B 176 B 205 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7331 53.4025 9.1499 REMARK 3 T TENSOR REMARK 3 T11: -0.0500 T22: 0.1143 REMARK 3 T33: -0.1379 T12: 0.1654 REMARK 3 T13: 0.0533 T23: 0.1093 REMARK 3 L TENSOR REMARK 3 L11: 0.0662 L22: 1.9569 REMARK 3 L33: 4.3099 L12: -0.1903 REMARK 3 L13: 0.3553 L23: 0.8193 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: 0.0934 S13: 0.2780 REMARK 3 S21: -0.0351 S22: -0.1242 S23: -0.3006 REMARK 3 S31: 0.5811 S32: 0.7194 S33: 0.1504 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 48 B 175 REMARK 3 RESIDUE RANGE : B 235 B 273 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7788 50.3317 16.7278 REMARK 3 T TENSOR REMARK 3 T11: -0.0446 T22: -0.0502 REMARK 3 T33: -0.1061 T12: -0.0260 REMARK 3 T13: 0.0235 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 3.1332 L22: 0.1847 REMARK 3 L33: 1.3553 L12: 0.3929 REMARK 3 L13: -0.0745 L23: -0.0615 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: 0.1452 S13: -0.3874 REMARK 3 S21: -0.0340 S22: 0.0543 S23: -0.0763 REMARK 3 S31: 0.2191 S32: -0.0721 S33: -0.0200 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45124 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5850 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.31500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 18% PEG-MONOMETHYL REMARK 280 ETHER 5K, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.72150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.84100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.72150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.84100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 23 REMARK 465 GLU A 24 REMARK 465 ARG A 25 REMARK 465 GLY A 26 REMARK 465 ASP A 33 REMARK 465 GLU A 34 REMARK 465 GLY A 35 REMARK 465 ALA A 36 REMARK 465 ALA A 37 REMARK 465 ASP A 38 REMARK 465 THR A 39 REMARK 465 TYR A 40 REMARK 465 ARG A 41 REMARK 465 ASP A 42 REMARK 465 LEU A 43 REMARK 465 ILE A 44 REMARK 465 GLN A 45 REMARK 465 ASP A 46 REMARK 465 LYS A 185 REMARK 465 GLN A 186 REMARK 465 GLU A 187 REMARK 465 LEU A 188 REMARK 465 PRO A 189 REMARK 465 GLY A 190 REMARK 465 ARG A 191 REMARK 465 SER A 192 REMARK 465 GLY A 193 REMARK 465 ARG A 194 REMARK 465 ARG A 195 REMARK 465 TYR A 196 REMARK 465 VAL A 197 REMARK 465 THR A 219 REMARK 465 THR A 220 REMARK 465 GLY A 274 REMARK 465 ALA A 275 REMARK 465 THR A 276 REMARK 465 ALA A 277 REMARK 465 ASP A 278 REMARK 465 ALA A 279 REMARK 465 ARG A 280 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 GLN B 4 REMARK 465 LEU B 5 REMARK 465 GLU B 6 REMARK 465 ARG B 7 REMARK 465 GLY B 8 REMARK 465 PRO B 9 REMARK 465 VAL B 10 REMARK 465 ARG B 11 REMARK 465 LEU B 19 REMARK 465 ALA B 20 REMARK 465 SER B 21 REMARK 465 VAL B 22 REMARK 465 GLY B 23 REMARK 465 GLU B 24 REMARK 465 ARG B 25 REMARK 465 GLY B 26 REMARK 465 VAL B 27 REMARK 465 LEU B 28 REMARK 465 CYS B 29 REMARK 465 ASP B 30 REMARK 465 PHE B 31 REMARK 465 TYR B 32 REMARK 465 ASP B 33 REMARK 465 GLU B 34 REMARK 465 GLY B 35 REMARK 465 ALA B 36 REMARK 465 ALA B 37 REMARK 465 ASP B 38 REMARK 465 THR B 39 REMARK 465 TYR B 40 REMARK 465 ARG B 41 REMARK 465 ASP B 42 REMARK 465 LEU B 43 REMARK 465 ILE B 44 REMARK 465 GLN B 45 REMARK 465 ASP B 46 REMARK 465 ALA B 47 REMARK 465 PRO B 62 REMARK 465 GLY B 190 REMARK 465 ARG B 191 REMARK 465 SER B 192 REMARK 465 GLY B 193 REMARK 465 ILE B 213 REMARK 465 HIS B 214 REMARK 465 PRO B 215 REMARK 465 ALA B 216 REMARK 465 ASP B 217 REMARK 465 GLU B 218 REMARK 465 THR B 219 REMARK 465 THR B 220 REMARK 465 ASP B 221 REMARK 465 PRO B 222 REMARK 465 PHE B 223 REMARK 465 VAL B 224 REMARK 465 VAL B 225 REMARK 465 CYS B 226 REMARK 465 GLY B 274 REMARK 465 ALA B 275 REMARK 465 THR B 276 REMARK 465 ALA B 277 REMARK 465 ASP B 278 REMARK 465 ALA B 279 REMARK 465 ARG B 280 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 184 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 VAL B 17 CG1 CG2 REMARK 470 LEU B 18 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 147 O HOH B 317 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 62 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 11 70.22 -104.67 REMARK 500 ASP A 48 61.19 -152.14 REMARK 500 PRO A 62 -106.94 -13.14 REMARK 500 ALA A 125 84.72 -163.66 REMARK 500 ASP A 129 46.11 -88.89 REMARK 500 ALA A 205 -53.95 -127.72 REMARK 500 ASP A 217 -70.62 -63.30 REMARK 500 ALA B 125 93.75 -164.74 REMARK 500 ASP B 129 -7.44 64.99 REMARK 500 ALA B 205 -56.14 -133.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MTFA_AMYOR RELATED DB: TARGETDB REMARK 900 RELATED ID: 3G2O RELATED DB: PDB REMARK 900 MTFA-SAM COMPLEX STRUCTURE REMARK 900 RELATED ID: 3G2P RELATED DB: PDB REMARK 900 MTFA-SAH COMPLEX STRUCTURE REMARK 900 RELATED ID: 3G2Q RELATED DB: PDB REMARK 900 MTFA-SFG COMPLEX STRUCTURE DBREF 3G2M A 1 280 UNP O52805 O52805_AMYOR 1 280 DBREF 3G2M B 1 280 UNP O52805 O52805_AMYOR 1 280 SEQADV 3G2M MSE A -18 UNP O52805 EXPRESSION TAG SEQADV 3G2M GLY A -17 UNP O52805 EXPRESSION TAG SEQADV 3G2M SER A -16 UNP O52805 EXPRESSION TAG SEQADV 3G2M SER A -15 UNP O52805 EXPRESSION TAG SEQADV 3G2M HIS A -14 UNP O52805 EXPRESSION TAG SEQADV 3G2M HIS A -13 UNP O52805 EXPRESSION TAG SEQADV 3G2M HIS A -12 UNP O52805 EXPRESSION TAG SEQADV 3G2M HIS A -11 UNP O52805 EXPRESSION TAG SEQADV 3G2M HIS A -10 UNP O52805 EXPRESSION TAG SEQADV 3G2M HIS A -9 UNP O52805 EXPRESSION TAG SEQADV 3G2M SER A -8 UNP O52805 EXPRESSION TAG SEQADV 3G2M GLY A -7 UNP O52805 EXPRESSION TAG SEQADV 3G2M GLY A -6 UNP O52805 EXPRESSION TAG SEQADV 3G2M LEU A -5 UNP O52805 EXPRESSION TAG SEQADV 3G2M VAL A -4 UNP O52805 EXPRESSION TAG SEQADV 3G2M PRO A -3 UNP O52805 EXPRESSION TAG SEQADV 3G2M ARG A -2 UNP O52805 EXPRESSION TAG SEQADV 3G2M GLY A -1 UNP O52805 EXPRESSION TAG SEQADV 3G2M SER A 0 UNP O52805 EXPRESSION TAG SEQADV 3G2M MSE B -18 UNP O52805 EXPRESSION TAG SEQADV 3G2M GLY B -17 UNP O52805 EXPRESSION TAG SEQADV 3G2M SER B -16 UNP O52805 EXPRESSION TAG SEQADV 3G2M SER B -15 UNP O52805 EXPRESSION TAG SEQADV 3G2M HIS B -14 UNP O52805 EXPRESSION TAG SEQADV 3G2M HIS B -13 UNP O52805 EXPRESSION TAG SEQADV 3G2M HIS B -12 UNP O52805 EXPRESSION TAG SEQADV 3G2M HIS B -11 UNP O52805 EXPRESSION TAG SEQADV 3G2M HIS B -10 UNP O52805 EXPRESSION TAG SEQADV 3G2M HIS B -9 UNP O52805 EXPRESSION TAG SEQADV 3G2M SER B -8 UNP O52805 EXPRESSION TAG SEQADV 3G2M GLY B -7 UNP O52805 EXPRESSION TAG SEQADV 3G2M GLY B -6 UNP O52805 EXPRESSION TAG SEQADV 3G2M LEU B -5 UNP O52805 EXPRESSION TAG SEQADV 3G2M VAL B -4 UNP O52805 EXPRESSION TAG SEQADV 3G2M PRO B -3 UNP O52805 EXPRESSION TAG SEQADV 3G2M ARG B -2 UNP O52805 EXPRESSION TAG SEQADV 3G2M GLY B -1 UNP O52805 EXPRESSION TAG SEQADV 3G2M SER B 0 UNP O52805 EXPRESSION TAG SEQRES 1 A 299 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER GLY GLY SEQRES 2 A 299 LEU VAL PRO ARG GLY SER MSE SER ASN GLN LEU GLU ARG SEQRES 3 A 299 GLY PRO VAL ARG THR PRO HIS ALA ASP VAL LEU LEU ALA SEQRES 4 A 299 SER VAL GLY GLU ARG GLY VAL LEU CYS ASP PHE TYR ASP SEQRES 5 A 299 GLU GLY ALA ALA ASP THR TYR ARG ASP LEU ILE GLN ASP SEQRES 6 A 299 ALA ASP GLY THR SER GLU ALA ARG GLU PHE ALA THR ARG SEQRES 7 A 299 THR GLY PRO VAL SER GLY PRO VAL LEU GLU LEU ALA ALA SEQRES 8 A 299 GLY MSE GLY ARG LEU THR PHE PRO PHE LEU ASP LEU GLY SEQRES 9 A 299 TRP GLU VAL THR ALA LEU GLU LEU SER THR SER VAL LEU SEQRES 10 A 299 ALA ALA PHE ARG LYS ARG LEU ALA GLU ALA PRO ALA ASP SEQRES 11 A 299 VAL ARG ASP ARG CYS THR LEU VAL GLN GLY ASP MSE SER SEQRES 12 A 299 ALA PHE ALA LEU ASP LYS ARG PHE GLY THR VAL VAL ILE SEQRES 13 A 299 SER SER GLY SER ILE ASN GLU LEU ASP GLU ALA ASP ARG SEQRES 14 A 299 ARG GLY LEU TYR ALA SER VAL ARG GLU HIS LEU GLU PRO SEQRES 15 A 299 GLY GLY LYS PHE LEU LEU SER LEU ALA MSE SER GLU ALA SEQRES 16 A 299 ALA GLU SER GLU PRO LEU GLU ARG LYS GLN GLU LEU PRO SEQRES 17 A 299 GLY ARG SER GLY ARG ARG TYR VAL LEU HIS VAL ARG HIS SEQRES 18 A 299 LEU PRO ALA GLU GLU ILE GLN GLU ILE THR ILE HIS PRO SEQRES 19 A 299 ALA ASP GLU THR THR ASP PRO PHE VAL VAL CYS THR HIS SEQRES 20 A 299 ARG ARG ARG LEU LEU ALA PRO ASP GLN VAL VAL ARG GLU SEQRES 21 A 299 LEU VAL ARG SER GLY PHE ASP VAL ILE ALA GLN THR PRO SEQRES 22 A 299 PHE ALA SER GLY GLY ALA GLY ARG LYS ASP MSE VAL LEU SEQRES 23 A 299 VAL GLU ALA VAL MSE PRO GLY ALA THR ALA ASP ALA ARG SEQRES 1 B 299 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER GLY GLY SEQRES 2 B 299 LEU VAL PRO ARG GLY SER MSE SER ASN GLN LEU GLU ARG SEQRES 3 B 299 GLY PRO VAL ARG THR PRO HIS ALA ASP VAL LEU LEU ALA SEQRES 4 B 299 SER VAL GLY GLU ARG GLY VAL LEU CYS ASP PHE TYR ASP SEQRES 5 B 299 GLU GLY ALA ALA ASP THR TYR ARG ASP LEU ILE GLN ASP SEQRES 6 B 299 ALA ASP GLY THR SER GLU ALA ARG GLU PHE ALA THR ARG SEQRES 7 B 299 THR GLY PRO VAL SER GLY PRO VAL LEU GLU LEU ALA ALA SEQRES 8 B 299 GLY MSE GLY ARG LEU THR PHE PRO PHE LEU ASP LEU GLY SEQRES 9 B 299 TRP GLU VAL THR ALA LEU GLU LEU SER THR SER VAL LEU SEQRES 10 B 299 ALA ALA PHE ARG LYS ARG LEU ALA GLU ALA PRO ALA ASP SEQRES 11 B 299 VAL ARG ASP ARG CYS THR LEU VAL GLN GLY ASP MSE SER SEQRES 12 B 299 ALA PHE ALA LEU ASP LYS ARG PHE GLY THR VAL VAL ILE SEQRES 13 B 299 SER SER GLY SER ILE ASN GLU LEU ASP GLU ALA ASP ARG SEQRES 14 B 299 ARG GLY LEU TYR ALA SER VAL ARG GLU HIS LEU GLU PRO SEQRES 15 B 299 GLY GLY LYS PHE LEU LEU SER LEU ALA MSE SER GLU ALA SEQRES 16 B 299 ALA GLU SER GLU PRO LEU GLU ARG LYS GLN GLU LEU PRO SEQRES 17 B 299 GLY ARG SER GLY ARG ARG TYR VAL LEU HIS VAL ARG HIS SEQRES 18 B 299 LEU PRO ALA GLU GLU ILE GLN GLU ILE THR ILE HIS PRO SEQRES 19 B 299 ALA ASP GLU THR THR ASP PRO PHE VAL VAL CYS THR HIS SEQRES 20 B 299 ARG ARG ARG LEU LEU ALA PRO ASP GLN VAL VAL ARG GLU SEQRES 21 B 299 LEU VAL ARG SER GLY PHE ASP VAL ILE ALA GLN THR PRO SEQRES 22 B 299 PHE ALA SER GLY GLY ALA GLY ARG LYS ASP MSE VAL LEU SEQRES 23 B 299 VAL GLU ALA VAL MSE PRO GLY ALA THR ALA ASP ALA ARG MODRES 3G2M MSE A 74 MET SELENOMETHIONINE MODRES 3G2M MSE A 123 MET SELENOMETHIONINE MODRES 3G2M MSE A 173 MET SELENOMETHIONINE MODRES 3G2M MSE A 265 MET SELENOMETHIONINE MODRES 3G2M MSE A 272 MET SELENOMETHIONINE MODRES 3G2M MSE B 74 MET SELENOMETHIONINE MODRES 3G2M MSE B 123 MET SELENOMETHIONINE MODRES 3G2M MSE B 173 MET SELENOMETHIONINE MODRES 3G2M MSE B 265 MET SELENOMETHIONINE MODRES 3G2M MSE B 272 MET SELENOMETHIONINE HET MSE A 74 8 HET MSE A 123 8 HET MSE A 173 8 HET MSE A 265 8 HET MSE A 272 8 HET MSE B 74 8 HET MSE B 123 8 HET MSE B 173 8 HET MSE B 265 8 HET MSE B 272 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 HOH *143(H2 O) HELIX 1 1 THR A 12 VAL A 22 1 11 HELIX 2 2 GLY A 49 GLY A 61 1 13 HELIX 3 3 LEU A 77 ASP A 83 1 7 HELIX 4 4 SER A 94 GLU A 107 1 14 HELIX 5 5 PRO A 109 ASP A 114 1 6 HELIX 6 6 SER A 138 ASN A 143 1 6 HELIX 7 7 ASP A 146 HIS A 160 1 15 HELIX 8 8 SER A 174 SER A 179 1 6 HELIX 9 9 ALA A 234 SER A 245 1 12 HELIX 10 10 THR B 12 LEU B 18 1 7 HELIX 11 11 GLY B 49 ARG B 59 1 11 HELIX 12 12 LEU B 77 ASP B 83 1 7 HELIX 13 13 SER B 94 ALA B 108 1 15 HELIX 14 14 PRO B 109 ASP B 114 1 6 HELIX 15 15 SER B 138 ASN B 143 1 6 HELIX 16 16 ASP B 146 HIS B 160 1 15 HELIX 17 17 SER B 174 SER B 179 1 6 HELIX 18 18 ALA B 234 SER B 245 1 12 SHEET 1 A 5 LEU A 28 ASP A 30 0 SHEET 2 A 5 VAL A 225 LEU A 233 1 O VAL A 225 N CYS A 29 SHEET 3 A 5 HIS A 199 PRO A 215 -1 N ILE A 213 O CYS A 226 SHEET 4 A 5 TYR B 196 THR B 212 -1 O ILE B 208 N LEU A 203 SHEET 5 A 5 ARG B 184 LEU B 188 -1 N LEU B 188 O TYR B 196 SHEET 1 B 5 LEU A 28 ASP A 30 0 SHEET 2 B 5 VAL A 225 LEU A 233 1 O VAL A 225 N CYS A 29 SHEET 3 B 5 HIS A 199 PRO A 215 -1 N ILE A 213 O CYS A 226 SHEET 4 B 5 TYR B 196 THR B 212 -1 O ILE B 208 N LEU A 203 SHEET 5 B 5 HIS B 228 LEU B 233 -1 O ARG B 230 N GLN B 209 SHEET 1 C 7 CYS A 116 GLN A 120 0 SHEET 2 C 7 VAL A 88 GLU A 92 1 N VAL A 88 O THR A 117 SHEET 3 C 7 VAL A 67 LEU A 70 1 N GLU A 69 O THR A 89 SHEET 4 C 7 PHE A 132 ILE A 137 1 O VAL A 136 N LEU A 68 SHEET 5 C 7 LEU A 161 ALA A 172 1 O LEU A 168 N VAL A 135 SHEET 6 C 7 MSE A 265 VAL A 271 -1 O VAL A 268 N LEU A 169 SHEET 7 C 7 ASP A 248 PHE A 255 -1 N ASP A 248 O VAL A 271 SHEET 1 D 7 CYS B 116 GLN B 120 0 SHEET 2 D 7 VAL B 88 GLU B 92 1 N ALA B 90 O THR B 117 SHEET 3 D 7 VAL B 67 LEU B 70 1 N VAL B 67 O THR B 89 SHEET 4 D 7 PHE B 132 ILE B 137 1 O VAL B 136 N LEU B 68 SHEET 5 D 7 LEU B 161 ALA B 172 1 O LEU B 168 N VAL B 135 SHEET 6 D 7 MSE B 265 VAL B 271 -1 O VAL B 268 N LEU B 169 SHEET 7 D 7 ASP B 248 PHE B 255 -1 N ASP B 248 O VAL B 271 LINK C GLY A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N GLY A 75 1555 1555 1.33 LINK C ASP A 122 N MSE A 123 1555 1555 1.34 LINK C MSE A 123 N SER A 124 1555 1555 1.33 LINK C ALA A 172 N MSE A 173 1555 1555 1.34 LINK C MSE A 173 N SER A 174 1555 1555 1.33 LINK C ASP A 264 N MSE A 265 1555 1555 1.33 LINK C MSE A 265 N VAL A 266 1555 1555 1.33 LINK C VAL A 271 N MSE A 272 1555 1555 1.33 LINK C MSE A 272 N PRO A 273 1555 1555 1.35 LINK C GLY B 73 N MSE B 74 1555 1555 1.33 LINK C MSE B 74 N GLY B 75 1555 1555 1.33 LINK C ASP B 122 N MSE B 123 1555 1555 1.34 LINK C MSE B 123 N SER B 124 1555 1555 1.33 LINK C ALA B 172 N MSE B 173 1555 1555 1.33 LINK C MSE B 173 N SER B 174 1555 1555 1.33 LINK C ASP B 264 N MSE B 265 1555 1555 1.33 LINK C MSE B 265 N VAL B 266 1555 1555 1.33 LINK C VAL B 271 N MSE B 272 1555 1555 1.33 LINK C MSE B 272 N PRO B 273 1555 1555 1.35 CISPEP 1 PRO A 62 VAL A 63 0 -8.13 CISPEP 2 ASP A 221 PRO A 222 0 -4.93 CRYST1 127.443 71.682 75.189 90.00 103.02 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007847 0.000000 0.001814 0.00000 SCALE2 0.000000 0.013951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013651 0.00000