HEADER TRANSFERASE 31-JAN-09 3G2P TITLE CRYSTAL STRUCTURE OF THE GLYCOPEPTIDE N-METHYLTRANSFERASE MTFA TITLE 2 COMPLEXED WITH (S)-ADENOSYL-L-HOMOCYSTEINE (SAH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PCZA361.24; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS; SOURCE 3 ORGANISM_TAXID: 31958; SOURCE 4 GENE: MTFA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SAM-DEPENDENT METHYLTRANSFERASE, GLYCOPEPTIDE ANTIBIOTICS KEYWDS 2 BIOSYNTHESIS, STRUCTURAL GENOMICS, MONTREAL-KINGSTON BACTERIAL KEYWDS 3 STRUCTURAL GENOMICS INITIATIVE, BSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SHI,A.MATTE,M.CYGLER,MONTREAL-KINGSTON BACTERIAL STRUCTURAL AUTHOR 2 GENOMICS INITIATIVE (BSGI) REVDAT 4 06-SEP-23 3G2P 1 REMARK SEQADV REVDAT 3 01-NOV-17 3G2P 1 REMARK REVDAT 2 13-JUL-11 3G2P 1 VERSN REVDAT 1 05-MAY-09 3G2P 0 JRNL AUTH R.SHI,S.S.LAMB,B.ZAKERI,A.PROTEAU,Q.CUI,T.SULEA,A.MATTE, JRNL AUTH 2 G.D.WRIGHT,M.CYGLER JRNL TITL STRUCTURE AND FUNCTION OF THE GLYCOPEPTIDE JRNL TITL 2 N-METHYLTRANSFERASE MTFA, A TOOL FOR THE BIOSYNTHESIS OF JRNL TITL 3 MODIFIED GLYCOPEPTIDE ANTIBIOTICS. JRNL REF CHEM.BIOL. V. 16 401 2009 JRNL REFN ISSN 1074-5521 JRNL PMID 19389626 JRNL DOI 10.1016/J.CHEMBIOL.2009.02.007 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 13628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 684 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 881 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3703 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 76.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.82000 REMARK 3 B22 (A**2) : 3.65000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.424 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.303 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.846 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3821 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5176 ; 1.490 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 481 ; 6.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;37.165 ;22.485 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 613 ;18.691 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;20.240 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 592 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2900 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1693 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2544 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 133 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.160 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.073 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2490 ; 0.628 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3873 ; 1.089 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1474 ; 1.304 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1302 ; 2.226 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 175 REMARK 3 RESIDUE RANGE : A 235 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4226 65.2342 34.8358 REMARK 3 T TENSOR REMARK 3 T11: -0.0676 T22: -0.0713 REMARK 3 T33: -0.0222 T12: -0.0216 REMARK 3 T13: -0.0067 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 3.0756 L22: 1.9192 REMARK 3 L33: 1.3771 L12: -0.1826 REMARK 3 L13: 0.3302 L23: 0.2069 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.0247 S13: 0.1836 REMARK 3 S21: 0.0704 S22: -0.0192 S23: -0.2250 REMARK 3 S31: -0.0849 S32: 0.0437 S33: 0.0454 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 32 REMARK 3 RESIDUE RANGE : B 206 B 234 REMARK 3 RESIDUE RANGE : A 176 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6566 76.6584 17.8068 REMARK 3 T TENSOR REMARK 3 T11: 0.1066 T22: 0.0525 REMARK 3 T33: 0.2498 T12: 0.1081 REMARK 3 T13: -0.0042 T23: 0.0723 REMARK 3 L TENSOR REMARK 3 L11: 8.8977 L22: 2.7326 REMARK 3 L33: 0.9780 L12: -3.0984 REMARK 3 L13: -0.3993 L23: -0.3742 REMARK 3 S TENSOR REMARK 3 S11: 0.1646 S12: 0.1945 S13: 1.4121 REMARK 3 S21: 0.0053 S22: -0.0510 S23: 0.2914 REMARK 3 S31: -0.5421 S32: -0.2087 S33: -0.1136 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 37 REMARK 3 RESIDUE RANGE : A 206 A 234 REMARK 3 RESIDUE RANGE : B 176 B 205 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9474 52.9200 9.7304 REMARK 3 T TENSOR REMARK 3 T11: 0.1168 T22: 0.0976 REMARK 3 T33: 0.0368 T12: 0.1551 REMARK 3 T13: 0.0644 T23: 0.0545 REMARK 3 L TENSOR REMARK 3 L11: 4.9115 L22: 1.1626 REMARK 3 L33: 4.6536 L12: -0.5069 REMARK 3 L13: -3.0768 L23: 2.0573 REMARK 3 S TENSOR REMARK 3 S11: -0.3533 S12: -0.3262 S13: -0.4192 REMARK 3 S21: 0.3257 S22: 0.2281 S23: -0.1844 REMARK 3 S31: 0.8806 S32: 0.7226 S33: 0.1252 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 47 B 175 REMARK 3 RESIDUE RANGE : B 235 B 273 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3234 50.9460 16.3421 REMARK 3 T TENSOR REMARK 3 T11: -0.0046 T22: -0.0069 REMARK 3 T33: -0.0711 T12: -0.0251 REMARK 3 T13: 0.0191 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 3.2246 L22: 0.3538 REMARK 3 L33: 1.3204 L12: 0.1912 REMARK 3 L13: -0.2438 L23: -0.0687 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: 0.0732 S13: -0.2378 REMARK 3 S21: -0.0022 S22: -0.0299 S23: -0.0627 REMARK 3 S31: 0.1224 S32: -0.1334 S33: 0.0427 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G2P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13628 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1240 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3G2M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 18% PEG-MONOMETHYL REMARK 280 ETHER 5K, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.23450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.22550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.23450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.22550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 ASP A 38 REMARK 465 THR A 39 REMARK 465 TYR A 40 REMARK 465 ARG A 41 REMARK 465 ASP A 42 REMARK 465 LEU A 43 REMARK 465 ILE A 44 REMARK 465 GLN A 45 REMARK 465 ASP A 46 REMARK 465 GLY A 61 REMARK 465 PRO A 62 REMARK 465 SER A 192 REMARK 465 GLY A 193 REMARK 465 ARG A 194 REMARK 465 ARG A 195 REMARK 465 GLY A 274 REMARK 465 ALA A 275 REMARK 465 THR A 276 REMARK 465 ALA A 277 REMARK 465 ASP A 278 REMARK 465 ALA A 279 REMARK 465 ARG A 280 REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 GLN B 4 REMARK 465 LEU B 5 REMARK 465 GLU B 6 REMARK 465 ARG B 7 REMARK 465 GLY B 26 REMARK 465 VAL B 27 REMARK 465 LEU B 28 REMARK 465 ASP B 33 REMARK 465 GLU B 34 REMARK 465 GLY B 35 REMARK 465 ALA B 36 REMARK 465 ALA B 37 REMARK 465 ASP B 38 REMARK 465 THR B 39 REMARK 465 TYR B 40 REMARK 465 ARG B 41 REMARK 465 ASP B 42 REMARK 465 LEU B 43 REMARK 465 ILE B 44 REMARK 465 GLN B 45 REMARK 465 ASP B 46 REMARK 465 ARG B 191 REMARK 465 SER B 192 REMARK 465 ALA B 216 REMARK 465 ASP B 217 REMARK 465 GLU B 218 REMARK 465 THR B 219 REMARK 465 THR B 220 REMARK 465 ASP B 221 REMARK 465 PRO B 222 REMARK 465 PHE B 223 REMARK 465 VAL B 224 REMARK 465 VAL B 225 REMARK 465 GLY B 274 REMARK 465 ALA B 275 REMARK 465 THR B 276 REMARK 465 ALA B 277 REMARK 465 ASP B 278 REMARK 465 ALA B 279 REMARK 465 ARG B 280 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 LEU A 188 CG CD1 CD2 REMARK 470 ARG B 11 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 17 CG1 CG2 REMARK 470 LEU B 18 CG CD1 CD2 REMARK 470 ARG B 25 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 213 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 9 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 PRO B 62 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 24 100.62 58.20 REMARK 500 ARG A 25 -87.36 49.21 REMARK 500 PHE A 31 3.09 -66.12 REMARK 500 ASP A 33 -133.74 -80.35 REMARK 500 ALA A 36 -38.95 -33.40 REMARK 500 PRO A 109 121.30 -30.48 REMARK 500 ALA A 125 79.05 -162.01 REMARK 500 LYS A 130 136.51 177.20 REMARK 500 ASP A 146 -169.98 -74.44 REMARK 500 ASP A 217 -124.54 -83.18 REMARK 500 GLU A 218 -25.31 173.27 REMARK 500 THR A 219 -94.65 -64.14 REMARK 500 THR A 220 -74.42 54.32 REMARK 500 ASP A 221 104.18 56.72 REMARK 500 PRO B 9 137.69 -18.64 REMARK 500 SER B 21 29.94 -77.47 REMARK 500 VAL B 22 -24.00 -154.54 REMARK 500 PRO B 62 -84.80 -8.20 REMARK 500 ALA B 71 66.29 62.06 REMARK 500 TRP B 86 159.92 -49.22 REMARK 500 ALA B 125 104.62 -166.55 REMARK 500 ASP B 129 -23.64 66.22 REMARK 500 GLU B 159 -14.57 -43.17 REMARK 500 GLN B 186 120.26 177.27 REMARK 500 ALA B 205 -52.24 -147.23 REMARK 500 HIS B 214 116.20 -166.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SAH B 500 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G2M RELATED DB: PDB REMARK 900 MTFA APO STRUCTURE REMARK 900 RELATED ID: 3G2O RELATED DB: PDB REMARK 900 MTFA-SAM COMPLEX STRUCTURE REMARK 900 RELATED ID: 3G2Q RELATED DB: PDB REMARK 900 MTFA-SFG COMPLEX STRUCTURE REMARK 900 RELATED ID: MTFA_AMYOR RELATED DB: TARGETDB DBREF 3G2P A 1 280 UNP O52805 O52805_AMYOR 1 280 DBREF 3G2P B 1 280 UNP O52805 O52805_AMYOR 1 280 SEQADV 3G2P MET A -18 UNP O52805 EXPRESSION TAG SEQADV 3G2P GLY A -17 UNP O52805 EXPRESSION TAG SEQADV 3G2P SER A -16 UNP O52805 EXPRESSION TAG SEQADV 3G2P SER A -15 UNP O52805 EXPRESSION TAG SEQADV 3G2P HIS A -14 UNP O52805 EXPRESSION TAG SEQADV 3G2P HIS A -13 UNP O52805 EXPRESSION TAG SEQADV 3G2P HIS A -12 UNP O52805 EXPRESSION TAG SEQADV 3G2P HIS A -11 UNP O52805 EXPRESSION TAG SEQADV 3G2P HIS A -10 UNP O52805 EXPRESSION TAG SEQADV 3G2P HIS A -9 UNP O52805 EXPRESSION TAG SEQADV 3G2P SER A -8 UNP O52805 EXPRESSION TAG SEQADV 3G2P GLY A -7 UNP O52805 EXPRESSION TAG SEQADV 3G2P GLY A -6 UNP O52805 EXPRESSION TAG SEQADV 3G2P LEU A -5 UNP O52805 EXPRESSION TAG SEQADV 3G2P VAL A -4 UNP O52805 EXPRESSION TAG SEQADV 3G2P PRO A -3 UNP O52805 EXPRESSION TAG SEQADV 3G2P ARG A -2 UNP O52805 EXPRESSION TAG SEQADV 3G2P GLY A -1 UNP O52805 EXPRESSION TAG SEQADV 3G2P SER A 0 UNP O52805 EXPRESSION TAG SEQADV 3G2P MET B -18 UNP O52805 EXPRESSION TAG SEQADV 3G2P GLY B -17 UNP O52805 EXPRESSION TAG SEQADV 3G2P SER B -16 UNP O52805 EXPRESSION TAG SEQADV 3G2P SER B -15 UNP O52805 EXPRESSION TAG SEQADV 3G2P HIS B -14 UNP O52805 EXPRESSION TAG SEQADV 3G2P HIS B -13 UNP O52805 EXPRESSION TAG SEQADV 3G2P HIS B -12 UNP O52805 EXPRESSION TAG SEQADV 3G2P HIS B -11 UNP O52805 EXPRESSION TAG SEQADV 3G2P HIS B -10 UNP O52805 EXPRESSION TAG SEQADV 3G2P HIS B -9 UNP O52805 EXPRESSION TAG SEQADV 3G2P SER B -8 UNP O52805 EXPRESSION TAG SEQADV 3G2P GLY B -7 UNP O52805 EXPRESSION TAG SEQADV 3G2P GLY B -6 UNP O52805 EXPRESSION TAG SEQADV 3G2P LEU B -5 UNP O52805 EXPRESSION TAG SEQADV 3G2P VAL B -4 UNP O52805 EXPRESSION TAG SEQADV 3G2P PRO B -3 UNP O52805 EXPRESSION TAG SEQADV 3G2P ARG B -2 UNP O52805 EXPRESSION TAG SEQADV 3G2P GLY B -1 UNP O52805 EXPRESSION TAG SEQADV 3G2P SER B 0 UNP O52805 EXPRESSION TAG SEQRES 1 A 299 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLY GLY SEQRES 2 A 299 LEU VAL PRO ARG GLY SER MET SER ASN GLN LEU GLU ARG SEQRES 3 A 299 GLY PRO VAL ARG THR PRO HIS ALA ASP VAL LEU LEU ALA SEQRES 4 A 299 SER VAL GLY GLU ARG GLY VAL LEU CYS ASP PHE TYR ASP SEQRES 5 A 299 GLU GLY ALA ALA ASP THR TYR ARG ASP LEU ILE GLN ASP SEQRES 6 A 299 ALA ASP GLY THR SER GLU ALA ARG GLU PHE ALA THR ARG SEQRES 7 A 299 THR GLY PRO VAL SER GLY PRO VAL LEU GLU LEU ALA ALA SEQRES 8 A 299 GLY MET GLY ARG LEU THR PHE PRO PHE LEU ASP LEU GLY SEQRES 9 A 299 TRP GLU VAL THR ALA LEU GLU LEU SER THR SER VAL LEU SEQRES 10 A 299 ALA ALA PHE ARG LYS ARG LEU ALA GLU ALA PRO ALA ASP SEQRES 11 A 299 VAL ARG ASP ARG CYS THR LEU VAL GLN GLY ASP MET SER SEQRES 12 A 299 ALA PHE ALA LEU ASP LYS ARG PHE GLY THR VAL VAL ILE SEQRES 13 A 299 SER SER GLY SER ILE ASN GLU LEU ASP GLU ALA ASP ARG SEQRES 14 A 299 ARG GLY LEU TYR ALA SER VAL ARG GLU HIS LEU GLU PRO SEQRES 15 A 299 GLY GLY LYS PHE LEU LEU SER LEU ALA MET SER GLU ALA SEQRES 16 A 299 ALA GLU SER GLU PRO LEU GLU ARG LYS GLN GLU LEU PRO SEQRES 17 A 299 GLY ARG SER GLY ARG ARG TYR VAL LEU HIS VAL ARG HIS SEQRES 18 A 299 LEU PRO ALA GLU GLU ILE GLN GLU ILE THR ILE HIS PRO SEQRES 19 A 299 ALA ASP GLU THR THR ASP PRO PHE VAL VAL CYS THR HIS SEQRES 20 A 299 ARG ARG ARG LEU LEU ALA PRO ASP GLN VAL VAL ARG GLU SEQRES 21 A 299 LEU VAL ARG SER GLY PHE ASP VAL ILE ALA GLN THR PRO SEQRES 22 A 299 PHE ALA SER GLY GLY ALA GLY ARG LYS ASP MET VAL LEU SEQRES 23 A 299 VAL GLU ALA VAL MET PRO GLY ALA THR ALA ASP ALA ARG SEQRES 1 B 299 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLY GLY SEQRES 2 B 299 LEU VAL PRO ARG GLY SER MET SER ASN GLN LEU GLU ARG SEQRES 3 B 299 GLY PRO VAL ARG THR PRO HIS ALA ASP VAL LEU LEU ALA SEQRES 4 B 299 SER VAL GLY GLU ARG GLY VAL LEU CYS ASP PHE TYR ASP SEQRES 5 B 299 GLU GLY ALA ALA ASP THR TYR ARG ASP LEU ILE GLN ASP SEQRES 6 B 299 ALA ASP GLY THR SER GLU ALA ARG GLU PHE ALA THR ARG SEQRES 7 B 299 THR GLY PRO VAL SER GLY PRO VAL LEU GLU LEU ALA ALA SEQRES 8 B 299 GLY MET GLY ARG LEU THR PHE PRO PHE LEU ASP LEU GLY SEQRES 9 B 299 TRP GLU VAL THR ALA LEU GLU LEU SER THR SER VAL LEU SEQRES 10 B 299 ALA ALA PHE ARG LYS ARG LEU ALA GLU ALA PRO ALA ASP SEQRES 11 B 299 VAL ARG ASP ARG CYS THR LEU VAL GLN GLY ASP MET SER SEQRES 12 B 299 ALA PHE ALA LEU ASP LYS ARG PHE GLY THR VAL VAL ILE SEQRES 13 B 299 SER SER GLY SER ILE ASN GLU LEU ASP GLU ALA ASP ARG SEQRES 14 B 299 ARG GLY LEU TYR ALA SER VAL ARG GLU HIS LEU GLU PRO SEQRES 15 B 299 GLY GLY LYS PHE LEU LEU SER LEU ALA MET SER GLU ALA SEQRES 16 B 299 ALA GLU SER GLU PRO LEU GLU ARG LYS GLN GLU LEU PRO SEQRES 17 B 299 GLY ARG SER GLY ARG ARG TYR VAL LEU HIS VAL ARG HIS SEQRES 18 B 299 LEU PRO ALA GLU GLU ILE GLN GLU ILE THR ILE HIS PRO SEQRES 19 B 299 ALA ASP GLU THR THR ASP PRO PHE VAL VAL CYS THR HIS SEQRES 20 B 299 ARG ARG ARG LEU LEU ALA PRO ASP GLN VAL VAL ARG GLU SEQRES 21 B 299 LEU VAL ARG SER GLY PHE ASP VAL ILE ALA GLN THR PRO SEQRES 22 B 299 PHE ALA SER GLY GLY ALA GLY ARG LYS ASP MET VAL LEU SEQRES 23 B 299 VAL GLU ALA VAL MET PRO GLY ALA THR ALA ASP ALA ARG HET SAH A 500 26 HET SAH B 500 19 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 5 HOH *9(H2 O) HELIX 1 1 THR A 12 GLY A 23 1 12 HELIX 2 2 GLY A 49 ARG A 59 1 11 HELIX 3 3 LEU A 77 LEU A 84 1 8 HELIX 4 4 SER A 94 GLU A 107 1 14 HELIX 5 5 PRO A 109 ARG A 115 1 7 HELIX 6 6 SER A 138 ASN A 143 1 6 HELIX 7 7 ASP A 146 GLU A 159 1 14 HELIX 8 8 SER A 174 SER A 179 1 6 HELIX 9 9 ALA A 234 SER A 245 1 12 HELIX 10 10 THR B 12 ALA B 20 1 9 HELIX 11 11 GLY B 49 ARG B 59 1 11 HELIX 12 12 LEU B 77 LEU B 84 1 8 HELIX 13 13 SER B 94 ALA B 108 1 15 HELIX 14 14 PRO B 109 ASP B 114 1 6 HELIX 15 15 SER B 138 ASN B 143 1 6 HELIX 16 16 ASP B 146 HIS B 160 1 15 HELIX 17 17 SER B 174 SER B 179 1 6 HELIX 18 18 ALA B 234 ARG B 244 1 11 CISPEP 1 GLU A 24 ARG A 25 0 -13.79 CISPEP 2 GLU A 34 GLY A 35 0 3.45 CISPEP 3 ASP A 221 PRO A 222 0 2.86 CISPEP 4 PRO B 62 VAL B 63 0 -11.21 SITE 1 AC1 14 GLU A 69 ALA A 71 GLY A 73 ARG A 76 SITE 2 AC1 14 LEU A 77 GLU A 92 LEU A 93 GLY A 121 SITE 3 AC1 14 ASP A 122 MET A 123 SER A 138 SER A 141 SITE 4 AC1 14 GLU A 144 HOH A 285 SITE 1 AC2 8 ALA B 71 GLY B 73 GLU B 92 LEU B 93 SITE 2 AC2 8 GLY B 121 ASP B 122 MET B 123 GLU B 144 CRYST1 126.469 72.451 75.246 90.00 104.19 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007907 0.000000 0.001999 0.00000 SCALE2 0.000000 0.013802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013708 0.00000