HEADER PROTEIN TRANSPORT 01-FEB-09 3G2S TITLE VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH SORLA C-TERMINAL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR-BINDING PROTEIN GGA1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: VHS DOMAIN (N-TERMINAL DOMAIN); COMPND 5 SYNONYM: GOLGI-LOCALIZED, GAMMA EAR-CONTAINING, ARF-BINDING PROTEIN COMPND 6 1, GAMMA-ADAPTIN-RELATED PROTEIN 1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: C-TERMINAL FRAGMENT OF SORTILIN-RELATED RECEPTOR; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: SORTING PROTEIN-RELATED RECEPTOR CONTAINING LDLR CLASS A COMPND 12 REPEATS, SORLA, SORLA-1, LOW-DENSITY LIPOPROTEIN RECEPTOR RELATIVE COMPND 13 WITH 11 LIGAND-BINDING REPEATS, LDLR RELATIVE WITH 11 LIGAND-BINDING COMPND 14 REPEATS, LR11; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODONPLUS-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED KEYWDS ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA1, VHS, ACIDIC-CLUSTER KEYWDS 2 DILEUCINE SIGNAL, SORLA, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.F.CRAMER,M.A.BEHRENS,C.GUSTAFSEN,C.L.P.OLIVEIRA,J.S.PEDERSEN, AUTHOR 2 P.MADSEN,C.M.PETERSEN,S.S.THIRUP REVDAT 3 01-NOV-23 3G2S 1 REMARK SEQADV REVDAT 2 05-FEB-14 3G2S 1 JRNL VERSN REVDAT 1 15-DEC-09 3G2S 0 JRNL AUTH J.F.CRAMER,C.GUSTAFSEN,M.A.BEHRENS,C.L.P.OLIVEIRA, JRNL AUTH 2 J.S.PEDERSEN,P.MADSEN,C.M.PETERSEN,S.S.THIRUP JRNL TITL GGA AUTOINHIBITION REVISITED JRNL REF TRAFFIC V. 11 259 2010 JRNL REFN ISSN 1398-9219 JRNL PMID 20015111 JRNL DOI 10.1111/J.1600-0854.2009.01017.X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3310 - 3.8910 0.99 2924 154 0.1800 0.1860 REMARK 3 2 3.8910 - 3.0890 1.00 2787 146 0.1820 0.2020 REMARK 3 3 3.0890 - 2.6980 1.00 2763 146 0.2040 0.2400 REMARK 3 4 2.6980 - 2.4520 1.00 2752 145 0.1970 0.2210 REMARK 3 5 2.4520 - 2.2760 1.00 2715 143 0.1830 0.2380 REMARK 3 6 2.2760 - 2.1420 1.00 2729 143 0.1930 0.2140 REMARK 3 7 2.1420 - 2.0350 1.00 2689 142 0.1860 0.2460 REMARK 3 8 2.0350 - 1.9460 1.00 2723 143 0.1930 0.2450 REMARK 3 9 1.9460 - 1.8710 1.00 2719 143 0.2110 0.2320 REMARK 3 10 1.8710 - 1.8060 1.00 2710 143 0.2100 0.2310 REMARK 3 11 1.8060 - 1.7500 1.00 2665 140 0.2220 0.2710 REMARK 3 12 1.7500 - 1.7000 1.00 2662 140 0.2350 0.2660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 43.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46700 REMARK 3 B22 (A**2) : -0.55100 REMARK 3 B33 (A**2) : 0.08400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2565 REMARK 3 ANGLE : 1.224 3469 REMARK 3 CHIRALITY : 0.095 391 REMARK 3 PLANARITY : 0.018 443 REMARK 3 DIHEDRAL : 18.866 994 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 12.3843 -10.9475 -25.5608 REMARK 3 T TENSOR REMARK 3 T11: 0.0631 T22: 0.0808 REMARK 3 T33: 0.0699 T12: -0.0208 REMARK 3 T13: 0.0038 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.9921 L22: 1.3826 REMARK 3 L33: 1.4631 L12: -0.0796 REMARK 3 L13: -0.9057 L23: -0.0615 REMARK 3 S TENSOR REMARK 3 S11: -0.1067 S12: 0.1219 S13: -0.0712 REMARK 3 S21: -0.0439 S22: -0.0178 S23: -0.0165 REMARK 3 S31: 0.1020 S32: -0.0692 S33: 0.0871 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 5.9378 7.3497 -9.8610 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.0960 REMARK 3 T33: 0.0625 T12: 0.0018 REMARK 3 T13: 0.0180 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.1795 L22: 2.9808 REMARK 3 L33: 1.2284 L12: 0.2545 REMARK 3 L13: -0.7160 L23: 0.0510 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: -0.0073 S13: 0.0181 REMARK 3 S21: 0.2829 S22: -0.0357 S23: 0.1565 REMARK 3 S31: 0.0072 S32: 0.0013 S33: -0.0009 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 15.7936 3.0211 -37.2976 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.1767 REMARK 3 T33: 0.1072 T12: -0.0241 REMARK 3 T13: -0.0188 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.2878 L22: 1.9141 REMARK 3 L33: -0.3852 L12: -0.2980 REMARK 3 L13: -0.4327 L23: -0.2530 REMARK 3 S TENSOR REMARK 3 S11: 0.0714 S12: 0.2230 S13: 0.0972 REMARK 3 S21: -0.4611 S22: -0.0130 S23: 0.0033 REMARK 3 S31: 0.1604 S32: 0.0576 S33: -0.0639 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 20.6519 12.4015 -13.4341 REMARK 3 T TENSOR REMARK 3 T11: 0.1312 T22: 0.2734 REMARK 3 T33: 0.1064 T12: 0.0224 REMARK 3 T13: 0.0029 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.0364 L22: 0.3760 REMARK 3 L33: -0.1467 L12: -0.0374 REMARK 3 L13: -0.1825 L23: 0.2269 REMARK 3 S TENSOR REMARK 3 S11: -0.0662 S12: -0.2334 S13: 0.1806 REMARK 3 S21: 0.1534 S22: 0.0301 S23: -0.1022 REMARK 3 S31: -0.2656 S32: 0.2719 S33: -0.1297 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : HIGH RESOLUTION SI(311) CUT AND REMARK 200 A LOWER RESOLUTION SI(111) CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34575 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.210 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.26 REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JWF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15%(W/V) PEG 5000 MME, 0.2M NH4I, 0.3M REMARK 280 1,6-HEXANEDIOL, 0.1M MES-NAOH, PH 6.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.21500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.17500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.44500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.17500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.21500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.44500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 4 REMARK 465 MET B 5 REMARK 465 SER B 147 REMARK 465 ILE C 1 REMARK 465 THR C 2 REMARK 465 ILE D 1 REMARK 465 THR D 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 7 O - C - N ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 102 -99.98 -124.61 REMARK 500 GLU B 39 84.98 -172.69 REMARK 500 ASP B 40 172.83 171.59 REMARK 500 TYR B 102 -101.62 -121.07 REMARK 500 PHE D 4 9.26 -49.31 REMARK 500 ASP D 6 135.18 -8.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY D 3 PHE D 4 74.88 REMARK 500 SER D 5 ASP D 6 149.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ B 148 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G2T RELATED DB: PDB REMARK 900 RELATED ID: 3G2U RELATED DB: PDB REMARK 900 RELATED ID: 3G2V RELATED DB: PDB REMARK 900 RELATED ID: 3G2W RELATED DB: PDB DBREF 3G2S A 1 147 UNP Q9UJY5 GGA1_HUMAN 1 147 DBREF 3G2S B 1 147 UNP Q9UJY5 GGA1_HUMAN 1 147 DBREF 3G2S C 1 13 UNP Q92673 SORL_HUMAN 2202 2214 DBREF 3G2S D 1 13 UNP Q92673 SORL_HUMAN 2202 2214 SEQADV 3G2S GLY A -1 UNP Q9UJY5 EXPRESSION TAG SEQADV 3G2S SER A 0 UNP Q9UJY5 EXPRESSION TAG SEQADV 3G2S GLY B -1 UNP Q9UJY5 EXPRESSION TAG SEQADV 3G2S SER B 0 UNP Q9UJY5 EXPRESSION TAG SEQRES 1 A 149 GLY SER MET GLU PRO ALA MET GLU PRO GLU THR LEU GLU SEQRES 2 A 149 ALA ARG ILE ASN ARG ALA THR ASN PRO LEU ASN LYS GLU SEQRES 3 A 149 LEU ASP TRP ALA SER ILE ASN GLY PHE CYS GLU GLN LEU SEQRES 4 A 149 ASN GLU ASP PHE GLU GLY PRO PRO LEU ALA THR ARG LEU SEQRES 5 A 149 LEU ALA HIS LYS ILE GLN SER PRO GLN GLU TRP GLU ALA SEQRES 6 A 149 ILE GLN ALA LEU THR VAL LEU GLU THR CYS MET LYS SER SEQRES 7 A 149 CYS GLY LYS ARG PHE HIS ASP GLU VAL GLY LYS PHE ARG SEQRES 8 A 149 PHE LEU ASN GLU LEU ILE LYS VAL VAL SER PRO LYS TYR SEQRES 9 A 149 LEU GLY SER ARG THR SER GLU LYS VAL LYS ASN LYS ILE SEQRES 10 A 149 LEU GLU LEU LEU TYR SER TRP THR VAL GLY LEU PRO GLU SEQRES 11 A 149 GLU VAL LYS ILE ALA GLU ALA TYR GLN MET LEU LYS LYS SEQRES 12 A 149 GLN GLY ILE VAL LYS SER SEQRES 1 B 149 GLY SER MET GLU PRO ALA MET GLU PRO GLU THR LEU GLU SEQRES 2 B 149 ALA ARG ILE ASN ARG ALA THR ASN PRO LEU ASN LYS GLU SEQRES 3 B 149 LEU ASP TRP ALA SER ILE ASN GLY PHE CYS GLU GLN LEU SEQRES 4 B 149 ASN GLU ASP PHE GLU GLY PRO PRO LEU ALA THR ARG LEU SEQRES 5 B 149 LEU ALA HIS LYS ILE GLN SER PRO GLN GLU TRP GLU ALA SEQRES 6 B 149 ILE GLN ALA LEU THR VAL LEU GLU THR CYS MET LYS SER SEQRES 7 B 149 CYS GLY LYS ARG PHE HIS ASP GLU VAL GLY LYS PHE ARG SEQRES 8 B 149 PHE LEU ASN GLU LEU ILE LYS VAL VAL SER PRO LYS TYR SEQRES 9 B 149 LEU GLY SER ARG THR SER GLU LYS VAL LYS ASN LYS ILE SEQRES 10 B 149 LEU GLU LEU LEU TYR SER TRP THR VAL GLY LEU PRO GLU SEQRES 11 B 149 GLU VAL LYS ILE ALA GLU ALA TYR GLN MET LEU LYS LYS SEQRES 12 B 149 GLN GLY ILE VAL LYS SER SEQRES 1 C 13 ILE THR GLY PHE SER ASP ASP VAL PRO MET VAL ILE ALA SEQRES 1 D 13 ILE THR GLY PHE SER ASP ASP VAL PRO MET VAL ILE ALA HET HEZ B 148 8 HETNAM HEZ HEXANE-1,6-DIOL FORMUL 5 HEZ C6 H14 O2 FORMUL 6 HOH *275(H2 O) HELIX 1 1 THR A 9 THR A 18 1 10 HELIX 2 2 ASP A 26 LEU A 37 1 12 HELIX 3 3 ASN A 38 ASP A 40 5 3 HELIX 4 4 GLU A 42 GLN A 56 1 15 HELIX 5 5 GLN A 59 CYS A 77 1 19 HELIX 6 6 GLY A 78 GLY A 86 1 9 HELIX 7 7 LYS A 87 SER A 99 1 13 HELIX 8 8 LEU A 103 THR A 107 5 5 HELIX 9 9 SER A 108 LEU A 126 1 19 HELIX 10 10 GLU A 129 GLN A 142 1 14 HELIX 11 11 THR B 9 THR B 18 1 10 HELIX 12 12 ASP B 26 ASN B 38 1 13 HELIX 13 13 GLU B 42 GLN B 56 1 15 HELIX 14 14 GLN B 59 CYS B 77 1 19 HELIX 15 15 GLY B 78 GLY B 86 1 9 HELIX 16 16 LYS B 87 SER B 99 1 13 HELIX 17 17 LEU B 103 THR B 107 5 5 HELIX 18 18 SER B 108 LEU B 126 1 19 HELIX 19 19 GLU B 129 GLN B 142 1 14 SSBOND 1 CYS A 34 CYS A 73 1555 1555 2.04 SSBOND 2 CYS B 34 CYS B 73 1555 1555 2.07 SITE 1 AC1 6 PRO A 20 HOH A 223 THR B 9 GLU B 11 SITE 2 AC1 6 HOH B 159 HOH B 200 CRYST1 42.430 52.890 136.350 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023568 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018907 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007334 0.00000