HEADER NUCLEAR PROTEIN 02-FEB-09 3G36 TITLE CRYSTAL STRUCTURE OF THE HUMAN DPY-30-LIKE C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DPY-30 HOMOLOG; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNI RESIDUES 45-99; COMPND 5 SYNONYM: DPY-30-LIKE PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DPY-30-LIKE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS X-TYPE FOUR-HELIX BUNDLE, NUCLEUS, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,Z.LOU,M.BARTLAM,Z.RAO REVDAT 5 10-NOV-21 3G36 1 REMARK SEQADV REVDAT 4 04-DEC-19 3G36 1 REMARK LINK REVDAT 3 13-JUL-11 3G36 1 VERSN REVDAT 2 07-JUL-09 3G36 1 JRNL REVDAT 1 30-JUN-09 3G36 0 JRNL AUTH X.WANG,Z.LOU,X.DONG,W.YANG,Y.PENG,B.YIN,Y.GONG,J.YUAN, JRNL AUTH 2 W.ZHOU,M.BARTLAM,X.PENG,Z.RAO JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN JRNL TITL 2 DPY-30-LIKE PROTEIN: A COMPONENT OF THE HISTONE JRNL TITL 3 METHYLTRANSFERASE COMPLEX JRNL REF J.MOL.BIOL. V. 390 530 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19481096 JRNL DOI 10.1016/J.JMB.2009.05.061 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.1 REMARK 3 NUMBER OF REFLECTIONS : 49236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2449 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 505 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 11.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.3580 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1624 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 361 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.682 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1684 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2285 ; 1.353 ; 2.035 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 201 ; 5.181 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;38.443 ;25.362 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 293 ;11.651 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.140 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 275 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1224 ; 0.008 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1037 ; 0.873 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1688 ; 1.638 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 647 ; 2.333 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 597 ; 3.781 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0968 13.6046 16.7101 REMARK 3 T TENSOR REMARK 3 T11: 0.0031 T22: 0.0012 REMARK 3 T33: 0.0054 T12: 0.0001 REMARK 3 T13: 0.0006 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.3617 L22: 0.1956 REMARK 3 L33: 0.0777 L12: 0.0791 REMARK 3 L13: -0.0031 L23: -0.0094 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: -0.0071 S13: 0.0123 REMARK 3 S21: 0.0085 S22: 0.0087 S23: 0.0146 REMARK 3 S31: -0.0097 S32: 0.0044 S33: 0.0074 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 46 B 96 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2520 -1.1689 13.8030 REMARK 3 T TENSOR REMARK 3 T11: 0.0007 T22: 0.0003 REMARK 3 T33: 0.0008 T12: 0.0004 REMARK 3 T13: 0.0001 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.2060 L22: 0.0541 REMARK 3 L33: 0.1853 L12: 0.0050 REMARK 3 L13: 0.0409 L23: 0.0455 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.0034 S13: 0.0101 REMARK 3 S21: 0.0033 S22: 0.0007 S23: 0.0045 REMARK 3 S31: -0.0051 S32: -0.0055 S33: 0.0046 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 46 C 96 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1771 19.9418 9.5333 REMARK 3 T TENSOR REMARK 3 T11: 0.0176 T22: 0.0016 REMARK 3 T33: 0.0088 T12: -0.0052 REMARK 3 T13: -0.0101 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.0938 L22: 0.2107 REMARK 3 L33: 0.1088 L12: 0.0475 REMARK 3 L13: -0.0759 L23: -0.0120 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.0028 S13: 0.0196 REMARK 3 S21: -0.0371 S22: 0.0125 S23: 0.0184 REMARK 3 S31: -0.0177 S32: 0.0053 S33: -0.0017 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 46 D 96 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8562 -7.5060 9.3029 REMARK 3 T TENSOR REMARK 3 T11: 0.0013 T22: 0.0001 REMARK 3 T33: 0.0015 T12: -0.0001 REMARK 3 T13: 0.0002 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.2126 L22: 0.1066 REMARK 3 L33: 0.1243 L12: 0.1024 REMARK 3 L13: -0.0249 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: -0.0016 S13: -0.0121 REMARK 3 S21: -0.0018 S22: 0.0006 S23: -0.0124 REMARK 3 S31: 0.0117 S32: 0.0003 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 1 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2585 4.0454 16.8801 REMARK 3 T TENSOR REMARK 3 T11: 0.0621 T22: 0.0992 REMARK 3 T33: 0.0530 T12: 0.0257 REMARK 3 T13: -0.0364 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 11.9787 L22: 23.4189 REMARK 3 L33: 1.2536 L12: -15.5474 REMARK 3 L13: -0.2844 L23: 2.3789 REMARK 3 S TENSOR REMARK 3 S11: 0.3268 S12: 0.1706 S13: -0.0553 REMARK 3 S21: -0.1458 S22: -0.0717 S23: -0.3410 REMARK 3 S31: 0.1653 S32: 0.0890 S33: -0.2550 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4733 3.7692 7.0321 REMARK 3 T TENSOR REMARK 3 T11: 0.0254 T22: 0.0268 REMARK 3 T33: 0.0150 T12: -0.0005 REMARK 3 T13: 0.0007 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 58.4000 L22: 8.2386 REMARK 3 L33: 19.4661 L12: -3.4586 REMARK 3 L13: -10.4417 L23: 12.5090 REMARK 3 S TENSOR REMARK 3 S11: 0.9167 S12: 0.7498 S13: 0.4694 REMARK 3 S21: 0.1845 S22: -0.4079 S23: -0.3147 REMARK 3 S31: 0.1892 S32: -0.6717 S33: -0.5088 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1381 11.4401 7.9435 REMARK 3 T TENSOR REMARK 3 T11: 0.0430 T22: 0.1340 REMARK 3 T33: 0.1318 T12: -0.0647 REMARK 3 T13: 0.0503 T23: -0.0723 REMARK 3 L TENSOR REMARK 3 L11: 68.2856 L22: 113.8862 REMARK 3 L33: 69.9221 L12: 47.2058 REMARK 3 L13: -20.5042 L23: 57.8050 REMARK 3 S TENSOR REMARK 3 S11: 1.1765 S12: -1.3645 S13: 2.6997 REMARK 3 S21: 1.1165 S22: -1.2277 S23: 2.8442 REMARK 3 S31: -0.0904 S32: 0.1682 S33: 0.0512 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 1 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8191 1.0476 5.6932 REMARK 3 T TENSOR REMARK 3 T11: 0.3537 T22: 0.4976 REMARK 3 T33: 0.6485 T12: 0.0020 REMARK 3 T13: -0.0434 T23: 0.2545 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0001 REMARK 3 L33: 0.0002 L12: -0.0000 REMARK 3 L13: -0.0001 L23: 0.0001 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.0023 S13: -0.0001 REMARK 3 S21: -0.0049 S22: 0.0012 S23: 0.0006 REMARK 3 S31: -0.0048 S32: -0.0064 S33: -0.0036 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 465 REMARK 3 RESIDUE RANGE : C 8 C 464 REMARK 3 RESIDUE RANGE : B 4 B 451 REMARK 3 RESIDUE RANGE : D 2 D 466 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2685 5.6927 13.1860 REMARK 3 T TENSOR REMARK 3 T11: 0.0001 T22: 0.0004 REMARK 3 T33: 0.0006 T12: 0.0001 REMARK 3 T13: 0.0001 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.1475 L22: 0.2437 REMARK 3 L33: 0.1149 L12: 0.1145 REMARK 3 L13: 0.0365 L23: 0.0370 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0017 S13: 0.0038 REMARK 3 S21: 0.0036 S22: 0.0059 S23: 0.0031 REMARK 3 S31: -0.0010 S32: 0.0026 S33: -0.0062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3G36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51431 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 28% PEG-MME 2000, 3% REMARK 280 1,6 HEXANEDIOL (ADDITIVE), PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.70050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.69400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.70050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.69400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 45 REMARK 465 ARG A 98 REMARK 465 ASN A 99 REMARK 465 LYS B 45 REMARK 465 ASP B 97 REMARK 465 ARG B 98 REMARK 465 ASN B 99 REMARK 465 LYS C 45 REMARK 465 ASP C 97 REMARK 465 ARG C 98 REMARK 465 ASN C 99 REMARK 465 LYS D 45 REMARK 465 ASP D 97 REMARK 465 ARG D 98 REMARK 465 ASN D 99 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASN B 79 O HOH B 345 1.78 REMARK 500 O HOH D 202 O HOH D 329 2.04 REMARK 500 O HOH A 359 O HOH C 458 2.08 REMARK 500 O HOH B 31 O HOH B 345 2.11 REMARK 500 O HOH B 154 O HOH B 285 2.12 REMARK 500 O ALA B 70 O HOH B 450 2.17 REMARK 500 O ALA B 93 O HOH B 275 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 128 O HOH D 128 2556 1.74 REMARK 500 OD1 ASP A 97 O HOH B 122 4556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 60 -53.06 -120.50 REMARK 500 GLU A 96 -2.34 111.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTU A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTV C 1 DBREF 3G36 A 45 99 UNP Q9C005 DPY30_HUMAN 45 99 DBREF 3G36 B 45 99 UNP Q9C005 DPY30_HUMAN 45 99 DBREF 3G36 C 45 99 UNP Q9C005 DPY30_HUMAN 45 99 DBREF 3G36 D 45 99 UNP Q9C005 DPY30_HUMAN 45 99 SEQADV 3G36 MSE A 69 UNP Q9C005 LEU 69 ENGINEERED MUTATION SEQADV 3G36 MSE B 69 UNP Q9C005 LEU 69 ENGINEERED MUTATION SEQADV 3G36 MSE C 69 UNP Q9C005 LEU 69 ENGINEERED MUTATION SEQADV 3G36 MSE D 69 UNP Q9C005 LEU 69 ENGINEERED MUTATION SEQRES 1 A 55 LYS VAL ASP LEU GLN SER LEU PRO THR ARG ALA TYR LEU SEQRES 2 A 55 ASP GLN THR VAL VAL PRO ILE LEU LEU GLN GLY MSE ALA SEQRES 3 A 55 VAL LEU ALA LYS GLU ARG PRO PRO ASN PRO ILE GLU PHE SEQRES 4 A 55 LEU ALA SER TYR LEU LEU LYS ASN LYS ALA GLN PHE GLU SEQRES 5 A 55 ASP ARG ASN SEQRES 1 B 55 LYS VAL ASP LEU GLN SER LEU PRO THR ARG ALA TYR LEU SEQRES 2 B 55 ASP GLN THR VAL VAL PRO ILE LEU LEU GLN GLY MSE ALA SEQRES 3 B 55 VAL LEU ALA LYS GLU ARG PRO PRO ASN PRO ILE GLU PHE SEQRES 4 B 55 LEU ALA SER TYR LEU LEU LYS ASN LYS ALA GLN PHE GLU SEQRES 5 B 55 ASP ARG ASN SEQRES 1 C 55 LYS VAL ASP LEU GLN SER LEU PRO THR ARG ALA TYR LEU SEQRES 2 C 55 ASP GLN THR VAL VAL PRO ILE LEU LEU GLN GLY MSE ALA SEQRES 3 C 55 VAL LEU ALA LYS GLU ARG PRO PRO ASN PRO ILE GLU PHE SEQRES 4 C 55 LEU ALA SER TYR LEU LEU LYS ASN LYS ALA GLN PHE GLU SEQRES 5 C 55 ASP ARG ASN SEQRES 1 D 55 LYS VAL ASP LEU GLN SER LEU PRO THR ARG ALA TYR LEU SEQRES 2 D 55 ASP GLN THR VAL VAL PRO ILE LEU LEU GLN GLY MSE ALA SEQRES 3 D 55 VAL LEU ALA LYS GLU ARG PRO PRO ASN PRO ILE GLU PHE SEQRES 4 D 55 LEU ALA SER TYR LEU LEU LYS ASN LYS ALA GLN PHE GLU SEQRES 5 D 55 ASP ARG ASN MODRES 3G36 MSE A 69 MET SELENOMETHIONINE MODRES 3G36 MSE B 69 MET SELENOMETHIONINE MODRES 3G36 MSE C 69 MET SELENOMETHIONINE MODRES 3G36 MSE D 69 MET SELENOMETHIONINE HET MSE A 69 8 HET MSE B 69 8 HET MSE C 69 8 HET MSE D 69 8 HET DTU A 1 8 HET DTT A 100 8 HET DTV C 1 8 HET HEZ D 1 8 HETNAM MSE SELENOMETHIONINE HETNAM DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM DTV (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL HETNAM HEZ HEXANE-1,6-DIOL HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 5 DTU C4 H10 O2 S2 FORMUL 6 DTT C4 H10 O2 S2 FORMUL 7 DTV C4 H10 O2 S2 FORMUL 8 HEZ C6 H14 O2 FORMUL 9 HOH *361(H2 O) HELIX 1 1 ASP A 47 LEU A 51 5 5 HELIX 2 2 PRO A 52 GLN A 59 1 8 HELIX 3 3 VAL A 61 ARG A 76 1 16 HELIX 4 4 ASN A 79 LYS A 92 1 14 HELIX 5 5 ALA A 93 GLU A 96 5 4 HELIX 6 6 ASP B 47 LEU B 51 5 5 HELIX 7 7 PRO B 52 VAL B 61 1 10 HELIX 8 8 VAL B 61 ARG B 76 1 16 HELIX 9 9 ASN B 79 GLU B 96 1 18 HELIX 10 10 ASP C 47 LEU C 51 5 5 HELIX 11 11 PRO C 52 VAL C 61 1 10 HELIX 12 12 VAL C 61 ARG C 76 1 16 HELIX 13 13 ASN C 79 LYS C 92 1 14 HELIX 14 14 ALA C 93 GLU C 96 5 4 HELIX 15 15 ASP D 47 LEU D 51 5 5 HELIX 16 16 PRO D 52 VAL D 61 1 10 HELIX 17 17 VAL D 61 ARG D 76 1 16 HELIX 18 18 ASN D 79 LYS D 92 1 14 HELIX 19 19 ALA D 93 GLU D 96 5 4 LINK C GLY A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N ALA A 70 1555 1555 1.33 LINK C GLY B 68 N MSE B 69 1555 1555 1.33 LINK C MSE B 69 N ALA B 70 1555 1555 1.33 LINK C GLY C 68 N MSE C 69 1555 1555 1.33 LINK C MSE C 69 N ALA C 70 1555 1555 1.34 LINK C GLY D 68 N MSE D 69 1555 1555 1.32 LINK C MSE D 69 N ALA D 70 1555 1555 1.33 CISPEP 1 VAL A 46 ASP A 47 0 -6.36 SITE 1 AC1 8 ARG B 76 GLN D 49 SER D 50 LEU D 51 SITE 2 AC1 8 PRO D 52 HOH D 356 HOH D 380 HOH D 393 SITE 1 AC2 2 ARG A 54 ARG D 54 SITE 1 AC3 3 VAL A 62 MSE A 69 VAL C 62 SITE 1 AC4 4 ARG C 54 HOH C 330 LEU D 65 LEU D 66 CRYST1 83.401 51.388 51.388 90.00 107.58 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011990 0.000000 0.003798 0.00000 SCALE2 0.000000 0.019460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020413 0.00000