HEADER TRANSFERASE 02-FEB-09 3G3S TITLE CRYSTAL STRUCTURE OF GCN5-RELATED N-ACETYLTRANSFERASE-LIKE PROTEIN TITLE 2 (ZP_00874857) (ZP_00874857.1) FROM STREPTOCOCCUS SUIS 89/1591 AT 1.80 TITLE 3 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GCN5-RELATED N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SUIS; SOURCE 3 ORGANISM_TAXID: 286604; SOURCE 4 STRAIN: 89/1591; SOURCE 5 GENE: SSUIDRAFT_1367, ZP_00874857.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ZP_00874857.1, GCN5-RELATED N-ACETYLTRANSFERASE-LIKE PROTEIN KEYWDS 2 (ZP_00874857), ACETYLTRANSFERASE (GNAT) FAMILY, STRUCTURAL GENOMICS, KEYWDS 3 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 4 INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 09-OCT-24 3G3S 1 REMARK REVDAT 5 01-FEB-23 3G3S 1 REMARK SEQADV LINK REVDAT 4 24-JUL-19 3G3S 1 REMARK LINK REVDAT 3 25-OCT-17 3G3S 1 REMARK REVDAT 2 13-JUL-11 3G3S 1 VERSN REVDAT 1 10-FEB-09 3G3S 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF GCN5-RELATED N-ACETYLTRANSFERASE-LIKE JRNL TITL 2 PROTEIN (ZP_00874857) (ZP_00874857.1) FROM STREPTOCOCCUS JRNL TITL 3 SUIS 89/1591 AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 52068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2652 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3571 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 532 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.03000 REMARK 3 B22 (A**2) : -2.07000 REMARK 3 B33 (A**2) : 4.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.731 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4101 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2727 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5567 ; 1.576 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6633 ; 0.965 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 516 ; 3.903 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;31.546 ;24.316 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 672 ;10.642 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;12.260 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 605 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4660 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 862 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 899 ; 0.199 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3039 ; 0.169 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1992 ; 0.187 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 2168 ; 0.090 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 652 ; 0.213 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.054 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.041 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.180 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.189 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.228 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2520 ; 1.814 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1044 ; 0.472 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4027 ; 3.004 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1654 ; 5.266 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1540 ; 7.520 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3. CACODYLATE ANION, NA ION AND ETHYLENE REMARK 3 GLYCOL FROM CRYSTALLIZATION AND CRYOPROTECTANT ARE MODELED INTO REMARK 3 THIS STRUCTURE, RESPECTIVELY. REMARK 4 REMARK 4 3G3S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97821, 0.97879 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52108 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.285 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 4.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.75300 REMARK 200 R SYM FOR SHELL (I) : 0.75300 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.20M MGCL2, 10.0% PEG 3000, REMARK 280 0.1M CACODYLATE PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.69750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.88150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.88150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.69750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 CD NE CZ NH1 NH2 REMARK 470 SER A 36 OG REMARK 470 ARG A 48 NH1 NH2 REMARK 470 LYS A 114 CD CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 GLU A 140 CD OE1 OE2 REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 LYS A 229 CD CE NZ REMARK 470 LYS A 233 CD CE NZ REMARK 470 ARG A 248 CD NE CZ NH1 NH2 REMARK 470 GLU B 3 CD OE1 OE2 REMARK 470 ARG B 7 CG CD NE CZ NH1 NH2 REMARK 470 SER B 36 OG REMARK 470 GLN B 37 CG CD OE1 NE2 REMARK 470 GLU B 87 CD OE1 OE2 REMARK 470 ASP B 91 OD1 OD2 REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 LYS B 240 CE NZ REMARK 470 ARG B 248 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 4 O SER B 36 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 162 CB CYS A 162 SG -0.119 REMARK 500 MSE B 28 SE MSE B 28 CE -0.583 REMARK 500 CYS B 203 CB CYS B 203 SG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 48 -50.39 -143.57 REMARK 500 ASP A 239 -71.20 -96.02 REMARK 500 ARG B 48 -50.84 -127.22 REMARK 500 ASP B 239 -70.18 -96.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 249 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 25 O REMARK 620 2 HOH A 276 O 82.6 REMARK 620 3 HOH A 299 O 91.6 173.1 REMARK 620 4 HOH A 413 O 100.2 86.8 90.5 REMARK 620 5 GLU B 25 O 153.3 77.0 109.6 95.8 REMARK 620 6 HOH B 271 O 79.2 82.8 99.9 169.5 81.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 380027 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3G3S A 1 248 UNP Q302C5 Q302C5_STRSU 1 248 DBREF 3G3S B 1 248 UNP Q302C5 Q302C5_STRSU 1 248 SEQADV 3G3S GLY A 0 UNP Q302C5 EXPRESSION TAG SEQADV 3G3S GLY B 0 UNP Q302C5 EXPRESSION TAG SEQRES 1 A 249 GLY MSE ALA GLU GLN MSE ARG ARG VAL ALA ARG LEU PHE SEQRES 2 A 249 GLY ASP TRP PRO GLU THR ILE ILE TRP THR CYS LEU GLU SEQRES 3 A 249 GLY THR MSE GLY ASP ILE TYR VAL ASP ASP SER GLN SER SEQRES 4 A 249 PRO GLN SER ALA LEU ALA LEU TYR GLY ARG GLN SER PHE SEQRES 5 A 249 PHE GLY PHE LEU ALA GLY GLN PRO HIS ARG ASP LEU LEU SEQRES 6 A 249 LYS ILE CYS GLU GLY LYS ASN ILE ILE LEU VAL PRO GLN SEQRES 7 A 249 ASN GLN ALA TRP SER ASP LEU ILE GLU GLU VAL TYR GLY SEQRES 8 A 249 ASP GLY VAL ARG PHE PHE THR ARG TYR ALA THR LYS LYS SEQRES 9 A 249 ASP THR GLU PHE ASP LEU GLY HIS LEU GLN LYS LEU VAL SEQRES 10 A 249 ASP ASP LEU PRO GLU SER PHE ASP MSE LYS LEU ILE ASP SEQRES 11 A 249 ARG ASN LEU TYR GLU THR CYS LEU VAL GLU GLU TRP SER SEQRES 12 A 249 ARG ASP LEU VAL GLY ASN TYR ILE ASP VAL GLU GLN PHE SEQRES 13 A 249 LEU ASP LEU GLY LEU GLY CYS VAL ILE LEU HIS LYS GLY SEQRES 14 A 249 GLN VAL VAL SER GLY ALA SER SER TYR ALA SER TYR SER SEQRES 15 A 249 ALA GLY ILE GLU ILE GLU VAL ASP THR ARG GLU ASP TYR SEQRES 16 A 249 ARG GLY LEU GLY LEU ALA LYS ALA CYS ALA ALA GLN LEU SEQRES 17 A 249 ILE LEU ALA CYS LEU ASP ARG GLY LEU TYR PRO SER TRP SEQRES 18 A 249 ASP ALA HIS THR LEU THR SER LEU LYS LEU ALA GLU LYS SEQRES 19 A 249 LEU GLY TYR GLU LEU ASP LYS ALA TYR GLN ALA TYR GLU SEQRES 20 A 249 TRP ARG SEQRES 1 B 249 GLY MSE ALA GLU GLN MSE ARG ARG VAL ALA ARG LEU PHE SEQRES 2 B 249 GLY ASP TRP PRO GLU THR ILE ILE TRP THR CYS LEU GLU SEQRES 3 B 249 GLY THR MSE GLY ASP ILE TYR VAL ASP ASP SER GLN SER SEQRES 4 B 249 PRO GLN SER ALA LEU ALA LEU TYR GLY ARG GLN SER PHE SEQRES 5 B 249 PHE GLY PHE LEU ALA GLY GLN PRO HIS ARG ASP LEU LEU SEQRES 6 B 249 LYS ILE CYS GLU GLY LYS ASN ILE ILE LEU VAL PRO GLN SEQRES 7 B 249 ASN GLN ALA TRP SER ASP LEU ILE GLU GLU VAL TYR GLY SEQRES 8 B 249 ASP GLY VAL ARG PHE PHE THR ARG TYR ALA THR LYS LYS SEQRES 9 B 249 ASP THR GLU PHE ASP LEU GLY HIS LEU GLN LYS LEU VAL SEQRES 10 B 249 ASP ASP LEU PRO GLU SER PHE ASP MSE LYS LEU ILE ASP SEQRES 11 B 249 ARG ASN LEU TYR GLU THR CYS LEU VAL GLU GLU TRP SER SEQRES 12 B 249 ARG ASP LEU VAL GLY ASN TYR ILE ASP VAL GLU GLN PHE SEQRES 13 B 249 LEU ASP LEU GLY LEU GLY CYS VAL ILE LEU HIS LYS GLY SEQRES 14 B 249 GLN VAL VAL SER GLY ALA SER SER TYR ALA SER TYR SER SEQRES 15 B 249 ALA GLY ILE GLU ILE GLU VAL ASP THR ARG GLU ASP TYR SEQRES 16 B 249 ARG GLY LEU GLY LEU ALA LYS ALA CYS ALA ALA GLN LEU SEQRES 17 B 249 ILE LEU ALA CYS LEU ASP ARG GLY LEU TYR PRO SER TRP SEQRES 18 B 249 ASP ALA HIS THR LEU THR SER LEU LYS LEU ALA GLU LYS SEQRES 19 B 249 LEU GLY TYR GLU LEU ASP LYS ALA TYR GLN ALA TYR GLU SEQRES 20 B 249 TRP ARG MODRES 3G3S MSE A 1 MET SELENOMETHIONINE MODRES 3G3S MSE A 5 MET SELENOMETHIONINE MODRES 3G3S MSE A 28 MET SELENOMETHIONINE MODRES 3G3S MSE A 125 MET SELENOMETHIONINE MODRES 3G3S MSE B 1 MET SELENOMETHIONINE MODRES 3G3S MSE B 5 MET SELENOMETHIONINE MODRES 3G3S MSE B 28 MET SELENOMETHIONINE MODRES 3G3S MSE B 125 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 5 8 HET MSE A 28 16 HET MSE A 125 8 HET MSE B 1 8 HET MSE B 5 8 HET MSE B 28 8 HET MSE B 125 8 HET NA A 249 1 HET CAC A 250 5 HET EDO A 251 4 HET EDO A 252 4 HET EDO A 253 4 HET EDO A 254 4 HET EDO B 249 4 HET EDO B 250 4 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM CAC CACODYLATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN CAC DIMETHYLARSINATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 NA NA 1+ FORMUL 4 CAC C2 H6 AS O2 1- FORMUL 5 EDO 6(C2 H6 O2) FORMUL 11 HOH *532(H2 O) HELIX 1 1 GLY A 0 GLY A 13 1 14 HELIX 2 2 GLU A 17 GLY A 26 1 10 HELIX 3 3 HIS A 60 GLU A 68 1 9 HELIX 4 4 ASN A 78 GLY A 90 1 13 HELIX 5 5 ASP A 108 ASP A 118 1 11 HELIX 6 6 ASP A 129 GLU A 139 1 11 HELIX 7 7 SER A 142 VAL A 146 5 5 HELIX 8 8 ASP A 151 GLY A 159 1 9 HELIX 9 9 GLU A 192 ARG A 195 5 4 HELIX 10 10 GLY A 198 ARG A 214 1 17 HELIX 11 11 THR A 224 GLY A 235 1 12 HELIX 12 12 GLY B 0 GLY B 13 1 14 HELIX 13 13 GLU B 17 GLY B 26 1 10 HELIX 14 14 HIS B 60 GLU B 68 1 9 HELIX 15 15 ASN B 78 GLY B 90 1 13 HELIX 16 16 ASP B 108 LEU B 119 1 12 HELIX 17 17 ASP B 129 GLU B 139 1 11 HELIX 18 18 GLU B 140 VAL B 146 5 7 HELIX 19 19 ASP B 151 GLY B 159 1 9 HELIX 20 20 GLY B 198 ARG B 214 1 17 HELIX 21 21 THR B 224 LEU B 234 1 11 SHEET 1 A 7 ASP A 30 VAL A 33 0 SHEET 2 A 7 SER A 41 GLY A 47 -1 O LEU A 43 N TYR A 32 SHEET 3 A 7 PHE A 51 GLY A 57 -1 O PHE A 54 N ALA A 44 SHEET 4 A 7 ILE A 72 PRO A 76 1 O VAL A 75 N GLY A 53 SHEET 5 A 7 LEU A 238 TRP A 247 -1 O TYR A 245 N LEU A 74 SHEET 6 A 7 VAL A 93 THR A 101 -1 N ARG A 94 O GLU A 246 SHEET 7 A 7 ASP A 221 ALA A 222 -1 O ALA A 222 N TYR A 99 SHEET 1 B 5 ASP A 124 LEU A 127 0 SHEET 2 B 5 GLY A 161 HIS A 166 -1 O LEU A 165 N ASP A 124 SHEET 3 B 5 GLN A 169 TYR A 180 -1 O SER A 172 N ILE A 164 SHEET 4 B 5 GLY A 183 THR A 190 -1 O GLU A 187 N SER A 175 SHEET 5 B 5 TYR A 217 SER A 219 1 O SER A 219 N ILE A 184 SHEET 1 C 7 ASP B 30 VAL B 33 0 SHEET 2 C 7 SER B 41 GLY B 47 -1 O LEU B 43 N TYR B 32 SHEET 3 C 7 PHE B 51 GLY B 57 -1 O ALA B 56 N ALA B 42 SHEET 4 C 7 ILE B 72 PRO B 76 1 O VAL B 75 N GLY B 53 SHEET 5 C 7 LEU B 238 TRP B 247 -1 O TYR B 245 N LEU B 74 SHEET 6 C 7 VAL B 93 THR B 101 -1 N ALA B 100 O ASP B 239 SHEET 7 C 7 ASP B 221 ALA B 222 -1 O ALA B 222 N TYR B 99 SHEET 1 D 5 PHE B 123 LEU B 127 0 SHEET 2 D 5 GLY B 161 HIS B 166 -1 O VAL B 163 N LYS B 126 SHEET 3 D 5 GLN B 169 TYR B 180 -1 O VAL B 171 N ILE B 164 SHEET 4 D 5 GLY B 183 THR B 190 -1 O GLU B 185 N TYR B 177 SHEET 5 D 5 TYR B 217 SER B 219 1 O SER B 219 N ILE B 186 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C GLN A 4 N MSE A 5 1555 1555 1.33 LINK C MSE A 5 N ARG A 6 1555 1555 1.33 LINK C THR A 27 N AMSE A 28 1555 1555 1.33 LINK C THR A 27 N BMSE A 28 1555 1555 1.33 LINK C AMSE A 28 N GLY A 29 1555 1555 1.33 LINK C BMSE A 28 N GLY A 29 1555 1555 1.33 LINK C ASP A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N LYS A 126 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ALA B 2 1555 1555 1.33 LINK C GLN B 4 N MSE B 5 1555 1555 1.31 LINK C MSE B 5 N ARG B 6 1555 1555 1.33 LINK C THR B 27 N MSE B 28 1555 1555 1.34 LINK C MSE B 28 N GLY B 29 1555 1555 1.34 LINK C ASP B 124 N MSE B 125 1555 1555 1.32 LINK C MSE B 125 N LYS B 126 1555 1555 1.34 LINK O GLU A 25 NA NA A 249 1555 1555 2.44 LINK NA NA A 249 O HOH A 276 1555 1555 2.62 LINK NA NA A 249 O HOH A 299 1555 1555 2.35 LINK NA NA A 249 O HOH A 413 1555 1555 2.68 LINK NA NA A 249 O GLU B 25 1555 1555 2.40 LINK NA NA A 249 O HOH B 271 1555 1555 2.41 SITE 1 AC1 6 GLU A 25 HOH A 276 HOH A 299 HOH A 413 SITE 2 AC1 6 GLU B 25 HOH B 271 SITE 1 AC2 10 ILE A 186 VAL A 188 TRP A 220 ASP A 221 SITE 2 AC2 10 ALA A 222 HIS A 223 SER A 227 EDO A 252 SITE 3 AC2 10 HOH A 290 HOH A 314 SITE 1 AC3 7 ALA A 9 LEU A 24 HOH A 276 HOH A 308 SITE 2 AC3 7 HOH A 393 GLU B 25 GLY B 26 SITE 1 AC4 9 PHE A 52 ARG A 98 TYR A 177 ILE A 186 SITE 2 AC4 9 GLU A 187 ASP A 221 CAC A 250 HOH A 259 SITE 3 AC4 9 HOH A 309 SITE 1 AC5 6 TRP A 15 GLN A 77 HOH A 293 HOH A 303 SITE 2 AC5 6 ARG B 195 HOH B 343 SITE 1 AC6 10 PRO A 76 GLN A 77 ASN A 78 GLN A 79 SITE 2 AC6 10 GLN A 243 HOH A 304 HOH A 353 HOH A 392 SITE 3 AC6 10 ASP B 193 HOH B 343 SITE 1 AC7 7 ARG B 98 ILE B 186 GLU B 187 ASP B 221 SITE 2 AC7 7 EDO B 250 HOH B 253 HOH B 405 SITE 1 AC8 7 ILE B 186 VAL B 188 TRP B 220 ASP B 221 SITE 2 AC8 7 EDO B 249 HOH B 333 HOH B 493 CRYST1 71.395 83.880 93.763 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014007 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010665 0.00000 CONECT 3 5 CONECT 5 3 6 CONECT 6 5 7 9 CONECT 7 6 8 13 CONECT 8 7 CONECT 9 6 10 CONECT 10 9 11 CONECT 11 10 12 CONECT 12 11 CONECT 13 7 CONECT 29 36 CONECT 36 29 37 CONECT 37 36 38 40 CONECT 38 37 39 44 CONECT 39 38 CONECT 40 37 41 CONECT 41 40 42 CONECT 42 41 43 CONECT 43 42 CONECT 44 38 CONECT 206 3986 CONECT 218 223 224 CONECT 223 218 225 CONECT 224 218 226 CONECT 225 223 227 231 CONECT 226 224 228 232 CONECT 227 225 229 239 CONECT 228 226 230 239 CONECT 229 227 CONECT 230 228 CONECT 231 225 233 CONECT 232 226 234 CONECT 233 231 235 CONECT 234 232 236 CONECT 235 233 237 CONECT 236 234 238 CONECT 237 235 CONECT 238 236 CONECT 239 227 228 CONECT 1008 1014 CONECT 1014 1008 1015 CONECT 1015 1014 1016 1018 CONECT 1016 1015 1017 1022 CONECT 1017 1016 CONECT 1018 1015 1019 CONECT 1019 1018 1020 CONECT 1020 1019 1021 CONECT 1021 1020 CONECT 1022 1016 CONECT 2002 2004 CONECT 2004 2002 2005 CONECT 2005 2004 2006 2008 CONECT 2006 2005 2007 2012 CONECT 2007 2006 CONECT 2008 2005 2009 CONECT 2009 2008 2010 CONECT 2010 2009 2011 CONECT 2011 2010 CONECT 2012 2006 CONECT 2025 2032 CONECT 2032 2025 2033 CONECT 2033 2032 2034 2036 CONECT 2034 2033 2035 2040 CONECT 2035 2034 CONECT 2036 2033 2037 CONECT 2037 2036 2038 CONECT 2038 2037 2039 CONECT 2039 2038 CONECT 2040 2034 CONECT 2201 3986 CONECT 2213 2218 CONECT 2218 2213 2219 CONECT 2219 2218 2220 2222 CONECT 2220 2219 2221 2226 CONECT 2221 2220 CONECT 2222 2219 2223 CONECT 2223 2222 2224 CONECT 2224 2223 2225 CONECT 2225 2224 CONECT 2226 2220 CONECT 2981 2987 CONECT 2987 2981 2988 CONECT 2988 2987 2989 2991 CONECT 2989 2988 2990 2995 CONECT 2990 2989 CONECT 2991 2988 2992 CONECT 2992 2991 2993 CONECT 2993 2992 2994 CONECT 2994 2993 CONECT 2995 2989 CONECT 3986 206 2201 4037 4060 CONECT 3986 4174 4297 CONECT 3987 3988 3989 3990 3991 CONECT 3988 3987 CONECT 3989 3987 CONECT 3990 3987 CONECT 3991 3987 CONECT 3992 3993 3994 CONECT 3993 3992 CONECT 3994 3992 3995 CONECT 3995 3994 CONECT 3996 3997 3998 CONECT 3997 3996 CONECT 3998 3996 3999 CONECT 3999 3998 CONECT 4000 4001 4002 CONECT 4001 4000 CONECT 4002 4000 4003 CONECT 4003 4002 CONECT 4004 4005 4006 CONECT 4005 4004 CONECT 4006 4004 4007 CONECT 4007 4006 CONECT 4008 4009 4010 CONECT 4009 4008 CONECT 4010 4008 4011 CONECT 4011 4010 CONECT 4012 4013 4014 CONECT 4013 4012 CONECT 4014 4012 4015 CONECT 4015 4014 CONECT 4037 3986 CONECT 4060 3986 CONECT 4174 3986 CONECT 4297 3986 MASTER 390 0 16 21 24 0 19 6 4466 2 125 40 END