HEADER HYDROLASE 03-FEB-09 3G4E TITLE CRYSTAL STRUCTURE OF HUMAN SENESCENCE MARKER PROTEIN-30(SMP30)(CALCIUM TITLE 2 BOUND) COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGUCALCIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 3-299; COMPND 5 SYNONYM: RC, SENESCENCE MARKER PROTEIN 30, SMP-30; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RGN, SMP30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T3 KEYWDS SIX BLADED BETA-PROPELLER, GLUCONOLCATONASE, ORGANOPHOSPHATE KEYWDS 2 HYDROLASE, REGUCALCIN, CALCIUM BOUND, ALTERNATIVE SPLICING, CALCIUM, KEYWDS 3 CYTOPLASM, PHOSPHOPROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.CHAKRABORTI,B.J.BAHNSON REVDAT 4 06-SEP-23 3G4E 1 REMARK LINK REVDAT 3 01-NOV-17 3G4E 1 REMARK REVDAT 2 05-MAY-10 3G4E 1 JRNL REVDAT 1 02-FEB-10 3G4E 0 JRNL AUTH S.CHAKRABORTI,B.J.BAHNSON JRNL TITL CRYSTAL STRUCTURE OF HUMAN SENESCENCE MARKER PROTEIN 30: JRNL TITL 2 INSIGHTS LINKING STRUCTURAL, ENZYMATIC, AND PHYSIOLOGICAL JRNL TITL 3 FUNCTIONS . JRNL REF BIOCHEMISTRY V. 49 3436 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20329768 JRNL DOI 10.1021/BI9022297 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELX REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.136 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.136 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 5201 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.130 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.122 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 4230 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 80465 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 497 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 46695 REMARK 3 NUMBER OF RESTRAINTS : 57483 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 ANGLE DISTANCES (A) : 0.030 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.032 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.061 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.072 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.038 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.059 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.094 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228 REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC REFINEMENT REDUCED FREE R REMARK 3 (NO CUTOFF) REMARK 4 REMARK 4 3G4E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100.000000 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : KOHZU HLD-4 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.19 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14159 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 84.819 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 7.0560 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.80800 REMARK 200 R SYM FOR SHELL (I) : 0.80800 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GHS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 38% PEG 6000, 0.1M TRIS-HCL, 5MM REMARK 280 CALCIUM CHLORIDE, 5MM DTT, PH 7.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.50050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET B 54 N CA C O CB CG SD REMARK 480 MET B 54 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG1 VAL A 224 O HOH A 793 1.26 REMARK 500 SG CYS A 262 O HOH A 760 1.33 REMARK 500 CG1 VAL B 21 O HOH B 792 1.46 REMARK 500 OE2 GLU B 121 O ALA B 123 1.89 REMARK 500 O GLU B 270 O LEU B 273 2.08 REMARK 500 CG LEU B 156 O HOH B 743 2.11 REMARK 500 O CYS A 248 O HOH A 804 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 98 C TYR A 146 2745 0.34 REMARK 500 OE2 GLU B 197 CZ ARG B 274 2746 0.38 REMARK 500 CE LYS A 98 O TYR A 146 2745 0.39 REMARK 500 CD GLU B 197 NH2 ARG B 274 2746 0.53 REMARK 500 NZ LYS A 98 O TYR A 146 2745 1.14 REMARK 500 OE2 GLU B 197 NH2 ARG B 274 2746 1.16 REMARK 500 CG GLU B 197 NH2 ARG B 274 2746 1.29 REMARK 500 OE2 GLU B 197 NE ARG B 274 2746 1.34 REMARK 500 NZ LYS A 98 CA TYR A 146 2745 1.36 REMARK 500 CD GLU B 197 CZ ARG B 274 2746 1.47 REMARK 500 CE LYS A 98 C TYR A 146 2745 1.58 REMARK 500 OE2 GLU B 197 NH1 ARG B 274 2746 1.61 REMARK 500 NZ LYS A 98 N PHE A 147 2745 1.64 REMARK 500 CD LYS A 98 O TYR A 146 2745 1.68 REMARK 500 OE1 GLU B 197 NH2 ARG B 274 2746 1.75 REMARK 500 CD GLU B 197 NE ARG B 274 2746 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 41 C TRP A 42 N -0.158 REMARK 500 TRP A 82 C LYS A 83 N -0.141 REMARK 500 LYS A 83 C GLU A 84 N 0.239 REMARK 500 GLU A 120 C GLU A 121 N -0.272 REMARK 500 PRO A 124 C PRO A 124 O 0.172 REMARK 500 ASN A 154 C GLY A 155 N 0.185 REMARK 500 LEU A 182 C GLN A 183 N -0.166 REMARK 500 CYS A 262 CB CYS A 262 SG -0.112 REMARK 500 ASP A 268 C PRO A 269 N -0.226 REMARK 500 PRO A 269 C GLU A 270 N -0.340 REMARK 500 GLU A 270 C GLY A 271 N 0.240 REMARK 500 LEU A 272 C LEU A 273 N -0.385 REMARK 500 THR B 122 C THR B 122 O 0.376 REMARK 500 ALA B 123 C ALA B 123 O 0.218 REMARK 500 ASP B 148 C GLN B 149 N -0.315 REMARK 500 LEU B 182 C GLN B 183 N -0.243 REMARK 500 GLY B 185 C GLN B 186 N -0.191 REMARK 500 GLU B 197 C LYS B 198 N -0.146 REMARK 500 PRO B 269 C GLU B 270 N -0.286 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 51 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR A 113 CB - CG - CD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 TYR A 113 CD1 - CG - CD2 ANGL. DEV. = -10.0 DEGREES REMARK 500 TYR A 113 CB - CG - CD1 ANGL. DEV. = 15.8 DEGREES REMARK 500 TYR A 113 CG - CD1 - CE1 ANGL. DEV. = 15.4 DEGREES REMARK 500 TYR A 113 CD1 - CE1 - CZ ANGL. DEV. = -9.2 DEGREES REMARK 500 THR A 122 CA - C - O ANGL. DEV. = -14.5 DEGREES REMARK 500 THR A 122 O - C - N ANGL. DEV. = 13.8 DEGREES REMARK 500 PRO A 124 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 PRO A 124 CA - C - O ANGL. DEV. = -19.9 DEGREES REMARK 500 PRO A 124 O - C - N ANGL. DEV. = -12.0 DEGREES REMARK 500 SER A 153 CA - C - N ANGL. DEV. = -15.7 DEGREES REMARK 500 SER A 153 O - C - N ANGL. DEV. = 14.7 DEGREES REMARK 500 ASN A 154 C - N - CA ANGL. DEV. = -34.4 DEGREES REMARK 500 ASN A 154 CA - C - N ANGL. DEV. = 29.5 DEGREES REMARK 500 ASN A 154 O - C - N ANGL. DEV. = -27.4 DEGREES REMARK 500 CYS A 262 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 MET A 267 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 GLU A 270 C - N - CA ANGL. DEV. = 20.3 DEGREES REMARK 500 GLU A 270 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 GLY A 271 C - N - CA ANGL. DEV. = -14.2 DEGREES REMARK 500 LEU A 272 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 LEU A 272 O - C - N ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG B 15 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 15 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 GLU B 24 OE1 - CD - OE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG B 41 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP B 55 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 96 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 LYS B 98 C - N - CA ANGL. DEV. = -32.1 DEGREES REMARK 500 ARG B 101 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 112 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR B 113 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 GLU B 121 O - C - N ANGL. DEV. = -25.4 DEGREES REMARK 500 THR B 122 CA - C - O ANGL. DEV. = 30.0 DEGREES REMARK 500 THR B 122 O - C - N ANGL. DEV. = -19.3 DEGREES REMARK 500 ALA B 123 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 ALA B 123 CA - C - O ANGL. DEV. = -28.3 DEGREES REMARK 500 ALA B 123 O - C - N ANGL. DEV. = -12.4 DEGREES REMARK 500 GLY B 185 C - N - CA ANGL. DEV. = 12.9 DEGREES REMARK 500 GLU B 197 CA - C - N ANGL. DEV. = 20.5 DEGREES REMARK 500 GLU B 197 O - C - N ANGL. DEV. = -18.9 DEGREES REMARK 500 ARG B 234 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG B 264 CG - CD - NE ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG B 264 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 16 89.13 -151.56 REMARK 500 ASN A 103 -120.83 -123.47 REMARK 500 HIS A 141 9.03 90.10 REMARK 500 ASP A 148 -156.47 -117.83 REMARK 500 ASN A 154 -114.27 -153.01 REMARK 500 GLN A 201 -129.91 54.19 REMARK 500 ASP A 204 -111.47 -124.78 REMARK 500 ASN A 220 -1.42 72.72 REMARK 500 LYS A 244 55.64 -93.41 REMARK 500 CYS B 16 86.09 -154.04 REMARK 500 ASN B 99 41.64 -156.00 REMARK 500 ASN B 103 -121.88 -124.12 REMARK 500 ALA B 123 -178.58 166.15 REMARK 500 PRO B 124 -77.03 -42.42 REMARK 500 ASP B 148 -162.05 -119.73 REMARK 500 ASN B 154 -138.80 -135.20 REMARK 500 GLN B 201 -136.28 58.52 REMARK 500 ASP B 204 -107.56 -123.95 REMARK 500 ASN B 220 -3.53 79.40 REMARK 500 LYS B 244 56.45 -93.63 REMARK 500 ARG B 274 -44.11 103.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 124 ALA A 125 -46.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 121 12.82 REMARK 500 PRO A 124 -40.56 REMARK 500 ASN A 154 -13.28 REMARK 500 GLU B 121 39.47 REMARK 500 ALA B 123 46.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 18 OE2 REMARK 620 2 ASN A 154 OD1 163.6 REMARK 620 3 ASP A 204 OD1 98.8 76.9 REMARK 620 4 HOH A 329 O 94.9 100.4 85.2 REMARK 620 5 HOH A 337 O 80.2 85.1 100.6 172.9 REMARK 620 6 HOH A 359 O 86.9 100.5 167.8 83.5 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 18 OE2 REMARK 620 2 ASN B 154 OD1 174.0 REMARK 620 3 ASP B 204 OD1 98.4 82.3 REMARK 620 4 HOH B 344 O 88.2 91.9 170.0 REMARK 620 5 HOH B 345 O 82.2 91.9 100.7 87.6 REMARK 620 6 HOH B 406 O 93.9 92.1 87.8 84.2 171.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G4H RELATED DB: PDB DBREF 3G4E A 3 299 UNP Q15493 RGN_HUMAN 3 299 DBREF 3G4E B 3 299 UNP Q15493 RGN_HUMAN 3 299 SEQRES 1 A 297 SER ILE LYS ILE GLU CYS VAL LEU PRO GLU ASN CYS ARG SEQRES 2 A 297 CYS GLY GLU SER PRO VAL TRP GLU GLU VAL SER ASN SER SEQRES 3 A 297 LEU LEU PHE VAL ASP ILE PRO ALA LYS LYS VAL CYS ARG SEQRES 4 A 297 TRP ASP SER PHE THR LYS GLN VAL GLN ARG VAL THR MET SEQRES 5 A 297 ASP ALA PRO VAL SER SER VAL ALA LEU ARG GLN SER GLY SEQRES 6 A 297 GLY TYR VAL ALA THR ILE GLY THR LYS PHE CYS ALA LEU SEQRES 7 A 297 ASN TRP LYS GLU GLN SER ALA VAL VAL LEU ALA THR VAL SEQRES 8 A 297 ASP ASN ASP LYS LYS ASN ASN ARG PHE ASN ASP GLY LYS SEQRES 9 A 297 VAL ASP PRO ALA GLY ARG TYR PHE ALA GLY THR MET ALA SEQRES 10 A 297 GLU GLU THR ALA PRO ALA VAL LEU GLU ARG HIS GLN GLY SEQRES 11 A 297 ALA LEU TYR SER LEU PHE PRO ASP HIS HIS VAL LYS LYS SEQRES 12 A 297 TYR PHE ASP GLN VAL ASP ILE SER ASN GLY LEU ASP TRP SEQRES 13 A 297 SER LEU ASP HIS LYS ILE PHE TYR TYR ILE ASP SER LEU SEQRES 14 A 297 SER TYR SER VAL ASP ALA PHE ASP TYR ASP LEU GLN THR SEQRES 15 A 297 GLY GLN ILE SER ASN ARG ARG SER VAL TYR LYS LEU GLU SEQRES 16 A 297 LYS GLU GLU GLN ILE PRO ASP GLY MET CYS ILE ASP ALA SEQRES 17 A 297 GLU GLY LYS LEU TRP VAL ALA CYS TYR ASN GLY GLY ARG SEQRES 18 A 297 VAL ILE ARG LEU ASP PRO VAL THR GLY LYS ARG LEU GLN SEQRES 19 A 297 THR VAL LYS LEU PRO VAL ASP LYS THR THR SER CYS CYS SEQRES 20 A 297 PHE GLY GLY LYS ASN TYR SER GLU MET TYR VAL THR CYS SEQRES 21 A 297 ALA ARG ASP GLY MET ASP PRO GLU GLY LEU LEU ARG GLN SEQRES 22 A 297 PRO GLU ALA GLY GLY ILE PHE LYS ILE THR GLY LEU GLY SEQRES 23 A 297 VAL LYS GLY ILE ALA PRO TYR SER TYR ALA GLY SEQRES 1 B 297 SER ILE LYS ILE GLU CYS VAL LEU PRO GLU ASN CYS ARG SEQRES 2 B 297 CYS GLY GLU SER PRO VAL TRP GLU GLU VAL SER ASN SER SEQRES 3 B 297 LEU LEU PHE VAL ASP ILE PRO ALA LYS LYS VAL CYS ARG SEQRES 4 B 297 TRP ASP SER PHE THR LYS GLN VAL GLN ARG VAL THR MET SEQRES 5 B 297 ASP ALA PRO VAL SER SER VAL ALA LEU ARG GLN SER GLY SEQRES 6 B 297 GLY TYR VAL ALA THR ILE GLY THR LYS PHE CYS ALA LEU SEQRES 7 B 297 ASN TRP LYS GLU GLN SER ALA VAL VAL LEU ALA THR VAL SEQRES 8 B 297 ASP ASN ASP LYS LYS ASN ASN ARG PHE ASN ASP GLY LYS SEQRES 9 B 297 VAL ASP PRO ALA GLY ARG TYR PHE ALA GLY THR MET ALA SEQRES 10 B 297 GLU GLU THR ALA PRO ALA VAL LEU GLU ARG HIS GLN GLY SEQRES 11 B 297 ALA LEU TYR SER LEU PHE PRO ASP HIS HIS VAL LYS LYS SEQRES 12 B 297 TYR PHE ASP GLN VAL ASP ILE SER ASN GLY LEU ASP TRP SEQRES 13 B 297 SER LEU ASP HIS LYS ILE PHE TYR TYR ILE ASP SER LEU SEQRES 14 B 297 SER TYR SER VAL ASP ALA PHE ASP TYR ASP LEU GLN THR SEQRES 15 B 297 GLY GLN ILE SER ASN ARG ARG SER VAL TYR LYS LEU GLU SEQRES 16 B 297 LYS GLU GLU GLN ILE PRO ASP GLY MET CYS ILE ASP ALA SEQRES 17 B 297 GLU GLY LYS LEU TRP VAL ALA CYS TYR ASN GLY GLY ARG SEQRES 18 B 297 VAL ILE ARG LEU ASP PRO VAL THR GLY LYS ARG LEU GLN SEQRES 19 B 297 THR VAL LYS LEU PRO VAL ASP LYS THR THR SER CYS CYS SEQRES 20 B 297 PHE GLY GLY LYS ASN TYR SER GLU MET TYR VAL THR CYS SEQRES 21 B 297 ALA ARG ASP GLY MET ASP PRO GLU GLY LEU LEU ARG GLN SEQRES 22 B 297 PRO GLU ALA GLY GLY ILE PHE LYS ILE THR GLY LEU GLY SEQRES 23 B 297 VAL LYS GLY ILE ALA PRO TYR SER TYR ALA GLY HET CA A 1 1 HET CA B 1 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *497(H2 O) HELIX 1 1 GLU A 197 GLN A 201 5 5 HELIX 2 2 GLY A 252 SER A 256 5 5 HELIX 3 3 ASP A 268 GLN A 275 1 8 HELIX 4 4 GLU B 197 GLN B 201 5 5 HELIX 5 5 GLY B 252 SER B 256 5 5 HELIX 6 6 ASP B 268 LEU B 273 1 6 SHEET 1 A 4 LYS A 5 LEU A 10 0 SHEET 2 A 4 ILE A 281 THR A 285 -1 O LYS A 283 N GLU A 7 SHEET 3 A 4 GLU A 257 CYS A 262 -1 N MET A 258 O ILE A 284 SHEET 4 A 4 THR A 245 GLY A 251 -1 N GLY A 251 O GLU A 257 SHEET 1 B 4 GLY A 17 GLU A 23 0 SHEET 2 B 4 SER A 28 ASP A 33 -1 O LEU A 30 N VAL A 21 SHEET 3 B 4 LYS A 38 ASP A 43 -1 O CYS A 40 N PHE A 31 SHEET 4 B 4 VAL A 49 THR A 53 -1 O VAL A 52 N VAL A 39 SHEET 1 C 4 VAL A 58 LEU A 63 0 SHEET 2 C 4 TYR A 69 ILE A 73 -1 O VAL A 70 N ALA A 62 SHEET 3 C 4 LYS A 76 ASN A 81 -1 O LEU A 80 N TYR A 69 SHEET 4 C 4 SER A 86 THR A 92 -1 O LEU A 90 N PHE A 77 SHEET 1 D 4 ASN A 100 VAL A 107 0 SHEET 2 D 4 TYR A 113 ALA A 119 -1 O GLY A 116 N ASN A 103 SHEET 3 D 4 GLY A 132 LEU A 137 -1 O TYR A 135 N ALA A 115 SHEET 4 D 4 VAL A 143 VAL A 150 -1 O VAL A 150 N GLY A 132 SHEET 1 E 4 SER A 153 TRP A 158 0 SHEET 2 E 4 ILE A 164 ASP A 169 -1 O TYR A 166 N ASP A 157 SHEET 3 E 4 SER A 174 TYR A 180 -1 O ASP A 176 N TYR A 167 SHEET 4 E 4 ILE A 187 LYS A 195 -1 O VAL A 193 N VAL A 175 SHEET 1 F 4 ILE A 202 ILE A 208 0 SHEET 2 F 4 LEU A 214 TYR A 219 -1 O TRP A 215 N CYS A 207 SHEET 3 F 4 ARG A 223 LEU A 227 -1 O LEU A 227 N LEU A 214 SHEET 4 F 4 ARG A 234 LYS A 239 -1 O VAL A 238 N VAL A 224 SHEET 1 G 4 LYS B 5 LEU B 10 0 SHEET 2 G 4 ILE B 281 THR B 285 -1 O LYS B 283 N GLU B 7 SHEET 3 G 4 GLU B 257 CYS B 262 -1 N MET B 258 O ILE B 284 SHEET 4 G 4 THR B 245 GLY B 251 -1 N CYS B 249 O TYR B 259 SHEET 1 H 4 GLY B 17 GLU B 23 0 SHEET 2 H 4 SER B 28 ASP B 33 -1 O SER B 28 N GLU B 23 SHEET 3 H 4 LYS B 38 ASP B 43 -1 O CYS B 40 N PHE B 31 SHEET 4 H 4 VAL B 49 THR B 53 -1 O VAL B 52 N VAL B 39 SHEET 1 I 4 VAL B 58 LEU B 63 0 SHEET 2 I 4 TYR B 69 ILE B 73 -1 O VAL B 70 N ALA B 62 SHEET 3 I 4 LYS B 76 ASN B 81 -1 O LEU B 80 N TYR B 69 SHEET 4 I 4 SER B 86 THR B 92 -1 O LEU B 90 N PHE B 77 SHEET 1 J 4 ASN B 100 VAL B 107 0 SHEET 2 J 4 TYR B 113 ALA B 119 -1 O GLY B 116 N ASN B 103 SHEET 3 J 4 GLY B 132 LEU B 137 -1 O LEU B 137 N TYR B 113 SHEET 4 J 4 VAL B 143 VAL B 150 -1 O TYR B 146 N LEU B 134 SHEET 1 K 4 SER B 153 TRP B 158 0 SHEET 2 K 4 ILE B 164 ASP B 169 -1 O TYR B 166 N ASP B 157 SHEET 3 K 4 SER B 174 TYR B 180 -1 O ASP B 176 N TYR B 167 SHEET 4 K 4 ILE B 187 LYS B 195 -1 O VAL B 193 N VAL B 175 SHEET 1 L 4 ILE B 202 ILE B 208 0 SHEET 2 L 4 LEU B 214 TYR B 219 -1 O TRP B 215 N CYS B 207 SHEET 3 L 4 ARG B 223 LEU B 227 -1 O LEU B 227 N LEU B 214 SHEET 4 L 4 ARG B 234 LYS B 239 -1 O LEU B 235 N ARG B 226 LINK CA CA A 1 OE2 GLU A 18 1555 1555 2.15 LINK CA CA A 1 OD1 ASN A 154 1555 1555 2.64 LINK CA CA A 1 OD1 ASP A 204 1555 1555 2.23 LINK CA CA A 1 O HOH A 329 1555 1555 2.34 LINK CA CA A 1 O HOH A 337 1555 1555 2.21 LINK CA CA A 1 O HOH A 359 1555 1555 2.25 LINK CA CA B 1 OE2 GLU B 18 1555 1555 2.11 LINK CA CA B 1 OD1 ASN B 154 1555 1555 2.25 LINK CA CA B 1 OD1 ASP B 204 1555 1555 2.12 LINK CA CA B 1 O HOH B 344 1555 1555 2.30 LINK CA CA B 1 O HOH B 345 1555 1555 2.28 LINK CA CA B 1 O HOH B 406 1555 1555 2.30 SITE 1 AC1 6 GLU A 18 ASN A 154 ASP A 204 HOH A 329 SITE 2 AC1 6 HOH A 337 HOH A 359 SITE 1 AC2 6 GLU B 18 ASN B 154 ASP B 204 HOH B 344 SITE 2 AC2 6 HOH B 345 HOH B 406 CRYST1 64.474 51.001 86.124 90.00 100.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015510 0.000000 0.002766 0.00000 SCALE2 0.000000 0.019607 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011794 0.00000