data_3G4M # _entry.id 3G4M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3G4M pdb_00003g4m 10.2210/pdb3g4m/pdb NDB UR0187 ? ? RCSB RCSB051416 ? ? WWPDB D_1000051416 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1U8D 'Guanine riboswitch bound to cognate ligand hypoxanthine' unspecified PDB 3GAO . unspecified PDB 3GER . unspecified PDB 3GES . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3G4M _pdbx_database_status.recvd_initial_deposition_date 2009-02-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gilbert, S.D.' 1 'Batey, R.T.' 2 # _citation.id primary _citation.title 'Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs.' _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 857 _citation.page_last 868 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19523903 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.04.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gilbert, S.D.' 1 ? primary 'Reyes, F.E.' 2 ? primary 'Edwards, A.L.' 3 ? primary 'Batey, R.T.' 4 ? # _cell.entry_id 3G4M _cell.length_a 127.430 _cell.length_b 35.160 _cell.length_c 42.240 _cell.angle_alpha 90.00 _cell.angle_beta 91.18 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3G4M _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Guanine riboswitch' 21506.783 1 ? ? ? ? 2 non-polymer syn 9H-purin-2-amine 135.127 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 11 ? ? ? ? 5 water nat water 18.015 64 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 A n 1 6 U n 1 7 A n 1 8 U n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 A n 1 22 U n 1 23 G n 1 24 G n 1 25 C n 1 26 A n 1 27 C n 1 28 G n 1 29 C n 1 30 A n 1 31 A n 1 32 G n 1 33 U n 1 34 U n 1 35 U n 1 36 C n 1 37 U n 1 38 A n 1 39 C n 1 40 C n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 G n 1 49 U n 1 50 A n 1 51 A n 1 52 A n 1 53 U n 1 54 G n 1 55 U n 1 56 C n 1 57 C n 1 58 G n 1 59 A n 1 60 C n 1 61 U n 1 62 A n 1 63 U n 1 64 G n 1 65 U n 1 66 C n 1 67 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;This sequence was engineered based on the guanine riboswitch in the 5'UTR of the xpt-pbuX gene in Bacillus subtilis. ; # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3G4M _struct_ref.pdbx_db_accession 3G4M _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3G4M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 67 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3G4M _struct_ref_seq.db_align_beg 15 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 81 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 15 _struct_ref_seq.pdbx_auth_seq_align_end 81 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2BP non-polymer . 9H-purin-2-amine 2-AMINOPURINE 'C5 H5 N5' 135.127 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3G4M _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 44.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;20% PEG 3K, 12.5 mM cobalt hexammine, 600mM ammonium acetate, 10 mM K-HEPES., pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 3000' ? ? ? 1 2 1 'Cobalt hexammine' ? ? ? 1 3 1 'Ammonium acetate' ? ? ? 1 4 1 K-HEPES ? ? ? 1 5 2 'PEG 3000' ? ? ? 1 6 2 'Cobalt hexammine' ? ? ? 1 7 2 'Ammonium acetate' ? ? ? 1 8 2 K-HEPES ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2008-11-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Nickel Filter' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3G4M _reflns.observed_criterion_sigma_I 3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 19.92 _reflns.d_resolution_high 2.4 _reflns.number_obs 13481 _reflns.number_all ? _reflns.percent_possible_obs 94.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.08 _reflns.pdbx_netI_over_sigmaI 8.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.83 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 86.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.284 _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 1.64 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3G4M _refine.ls_number_reflns_obs 13374 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 320880.12 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.92 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 93.4 _refine.ls_R_factor_obs 0.229 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.229 _refine.ls_R_factor_R_free 0.278 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.7 _refine.ls_number_reflns_R_free 1296 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 40.1 _refine.aniso_B[1][1] 6.97 _refine.aniso_B[2][2] -11.53 _refine.aniso_B[3][3] 4.57 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 8.80 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 26.0612 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 1U8D _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3G4M _refine_analyze.Luzzati_coordinate_error_obs 0.35 _refine_analyze.Luzzati_sigma_a_obs 0.60 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.43 _refine_analyze.Luzzati_sigma_a_free 0.71 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1422 _refine_hist.pdbx_number_atoms_ligand 91 _refine_hist.number_atoms_solvent 64 _refine_hist.number_atoms_total 1577 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 19.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.003 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.6 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 20.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.20 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.55 _refine_ls_shell.number_reflns_R_work 1876 _refine_ls_shell.R_factor_R_work 0.382 _refine_ls_shell.percent_reflns_obs 86.5 _refine_ls_shell.R_factor_R_free 0.407 _refine_ls_shell.R_factor_R_free_error 0.030 _refine_ls_shell.percent_reflns_R_free 9.1 _refine_ls_shell.number_reflns_R_free 188 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep_revise.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 cohex_rep.param cohex_rep.top 'X-RAY DIFFRACTION' 5 hpa5.param hpa5.top 'X-RAY DIFFRACTION' # _struct.entry_id 3G4M _struct.title 'Crystal structure of guanine riboswitch bound to 2-aminopurine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3G4M _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'riboswitch, mRNA, 2-aminopurine, guanine, three-way junction, RNA-ligand complex, double helix, base-triple., RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 62 N6 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 61 N3 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 61 O4 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 9 N1 ? ? ? 1_555 A G 32 N2 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog18 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 32 N3 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog19 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 12 N4 ? ? ? 1_555 A A 30 N1 ? ? A C 26 A A 44 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog22 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 19 N1 ? ? ? 1_555 A A 52 N6 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog37 hydrog ? ? A A 19 N6 ? ? ? 1_555 A A 52 N7 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog38 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 23 N2 ? ? A U 34 A G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog39 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 51 N7 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog40 hydrog ? ? A U 20 O2 ? ? ? 1_555 A A 51 N6 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog41 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 50 N1 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog42 hydrog ? ? A A 21 N7 ? ? ? 1_555 A A 50 N6 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog43 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 52 N1 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog50 hydrog ? ? A G 24 N3 ? ? ? 1_555 A A 52 N6 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog51 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 33 N3 ? ? ? 1_555 A U 37 O4 ? ? A U 47 A U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog55 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 62 N3 ? ? A U 49 A A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog56 hydrog ? ? A C 36 N4 ? ? ? 1_555 A U 61 O2 ? ? A C 50 A U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog57 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 55 O2 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog67 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 55 N3 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog68 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 53 N3 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 53 O4 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 47 O2 ? ? ? 1_555 A A 51 N6 ? ? A C 61 A A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog74 hydrog ? ? A G 48 N2 ? ? ? 1_555 A U 49 O4 ? ? A G 62 A U 63 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2BP 91 ? 8 'BINDING SITE FOR RESIDUE 2BP A 91' AC2 Software A ACT 96 ? 6 'BINDING SITE FOR RESIDUE ACT A 96' AC3 Software A NCO 101 ? 6 'BINDING SITE FOR RESIDUE NCO A 101' AC4 Software A NCO 102 ? 7 'BINDING SITE FOR RESIDUE NCO A 102' AC5 Software A NCO 103 ? 9 'BINDING SITE FOR RESIDUE NCO A 103' AC6 Software A NCO 104 ? 7 'BINDING SITE FOR RESIDUE NCO A 104' AC7 Software A NCO 105 ? 3 'BINDING SITE FOR RESIDUE NCO A 105' AC8 Software A NCO 107 ? 5 'BINDING SITE FOR RESIDUE NCO A 107' AC9 Software A NCO 108 ? 5 'BINDING SITE FOR RESIDUE NCO A 108' BC1 Software A NCO 109 ? 4 'BINDING SITE FOR RESIDUE NCO A 109' BC2 Software A NCO 110 ? 4 'BINDING SITE FOR RESIDUE NCO A 110' BC3 Software A NCO 111 ? 5 'BINDING SITE FOR RESIDUE NCO A 111' BC4 Software A NCO 112 ? 7 'BINDING SITE FOR RESIDUE NCO A 112' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 A A 7 ? A A 21 . ? 1_555 ? 2 AC1 8 U A 8 ? U A 22 . ? 1_555 ? 3 AC1 8 U A 33 ? U A 47 . ? 1_555 ? 4 AC1 8 U A 37 ? U A 51 . ? 1_555 ? 5 AC1 8 A A 38 ? A A 52 . ? 1_555 ? 6 AC1 8 A A 59 ? A A 73 . ? 1_555 ? 7 AC1 8 C A 60 ? C A 74 . ? 1_555 ? 8 AC1 8 U A 61 ? U A 75 . ? 1_555 ? 9 AC2 6 G A 18 ? G A 32 . ? 1_555 ? 10 AC2 6 A A 19 ? A A 33 . ? 1_555 ? 11 AC2 6 G A 24 ? G A 38 . ? 1_555 ? 12 AC2 6 C A 25 ? C A 39 . ? 1_555 ? 13 AC2 6 A A 52 ? A A 66 . ? 1_555 ? 14 AC2 6 HOH O . ? HOH A 523 . ? 1_555 ? 15 AC3 6 G A 15 ? G A 29 . ? 4_645 ? 16 AC3 6 U A 16 ? U A 30 . ? 4_645 ? 17 AC3 6 A A 52 ? A A 66 . ? 1_555 ? 18 AC3 6 U A 53 ? U A 67 . ? 1_555 ? 19 AC3 6 HOH O . ? HOH A 530 . ? 4_655 ? 20 AC3 6 HOH O . ? HOH A 542 . ? 1_555 ? 21 AC4 7 G A 24 ? G A 38 . ? 1_555 ? 22 AC4 7 C A 25 ? C A 39 . ? 1_555 ? 23 AC4 7 G A 42 ? G A 56 . ? 1_555 ? 24 AC4 7 G A 43 ? G A 57 . ? 4_656 ? 25 AC4 7 C A 44 ? C A 58 . ? 4_656 ? 26 AC4 7 HOH O . ? HOH A 510 . ? 1_555 ? 27 AC4 7 HOH O . ? HOH A 554 . ? 1_555 ? 28 AC5 9 C A 25 ? C A 39 . ? 1_555 ? 29 AC5 9 G A 41 ? G A 55 . ? 1_555 ? 30 AC5 9 G A 42 ? G A 56 . ? 1_555 ? 31 AC5 9 G A 43 ? G A 57 . ? 1_555 ? 32 AC5 9 G A 54 ? G A 68 . ? 1_555 ? 33 AC5 9 U A 55 ? U A 69 . ? 1_555 ? 34 AC5 9 HOH O . ? HOH A 506 . ? 1_555 ? 35 AC5 9 HOH O . ? HOH A 508 . ? 1_555 ? 36 AC5 9 HOH O . ? HOH A 514 . ? 1_555 ? 37 AC6 7 U A 16 ? U A 30 . ? 1_555 ? 38 AC6 7 G A 17 ? G A 31 . ? 1_555 ? 39 AC6 7 G A 18 ? G A 32 . ? 1_555 ? 40 AC6 7 A A 51 ? A A 65 . ? 1_555 ? 41 AC6 7 A A 52 ? A A 66 . ? 1_555 ? 42 AC6 7 HOH O . ? HOH A 501 . ? 1_555 ? 43 AC6 7 HOH O . ? HOH A 503 . ? 1_555 ? 44 AC7 3 G A 23 ? G A 37 . ? 1_555 ? 45 AC7 3 G A 24 ? G A 38 . ? 1_555 ? 46 AC7 3 HOH O . ? HOH A 539 . ? 1_555 ? 47 AC8 5 C A 27 ? C A 41 . ? 1_555 ? 48 AC8 5 G A 28 ? G A 42 . ? 1_555 ? 49 AC8 5 C A 39 ? C A 53 . ? 1_555 ? 50 AC8 5 C A 40 ? C A 54 . ? 1_555 ? 51 AC8 5 HOH O . ? HOH A 562 . ? 1_555 ? 52 AC9 5 G A 32 ? G A 46 . ? 1_555 ? 53 AC9 5 U A 33 ? U A 47 . ? 1_555 ? 54 AC9 5 C A 36 ? C A 50 . ? 1_555 ? 55 AC9 5 U A 37 ? U A 51 . ? 1_555 ? 56 AC9 5 HOH O . ? HOH A 553 . ? 1_555 ? 57 BC1 4 A A 10 ? A A 24 . ? 1_555 ? 58 BC1 4 C A 57 ? C A 71 . ? 1_555 ? 59 BC1 4 HOH O . ? HOH A 507 . ? 1_555 ? 60 BC1 4 HOH O . ? HOH A 522 . ? 1_555 ? 61 BC2 4 A A 7 ? A A 21 . ? 1_555 ? 62 BC2 4 U A 8 ? U A 22 . ? 1_555 ? 63 BC2 4 G A 64 ? G A 78 . ? 2_655 ? 64 BC2 4 HOH O . ? HOH A 531 . ? 1_555 ? 65 BC3 5 G A 18 ? G A 32 . ? 1_555 ? 66 BC3 5 A A 19 ? A A 33 . ? 1_555 ? 67 BC3 5 U A 20 ? U A 34 . ? 1_555 ? 68 BC3 5 A A 51 ? A A 65 . ? 1_555 ? 69 BC3 5 HOH O . ? HOH A 543 . ? 1_555 ? 70 BC4 7 C A 4 ? C A 18 . ? 1_555 ? 71 BC4 7 U A 22 ? U A 36 . ? 4_646 ? 72 BC4 7 G A 28 ? G A 42 . ? 1_545 ? 73 BC4 7 C A 29 ? C A 43 . ? 1_545 ? 74 BC4 7 G A 58 ? G A 72 . ? 1_555 ? 75 BC4 7 A A 59 ? A A 73 . ? 1_555 ? 76 BC4 7 HOH O . ? HOH A 532 . ? 1_555 ? # _database_PDB_matrix.entry_id 3G4M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3G4M _atom_sites.fract_transf_matrix[1][1] 0.007847 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000162 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028441 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023679 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 15 15 G GUA A . n A 1 2 G 2 16 16 G GUA A . n A 1 3 A 3 17 17 A ADE A . n A 1 4 C 4 18 18 C CYT A . n A 1 5 A 5 19 19 A ADE A . n A 1 6 U 6 20 20 U URI A . n A 1 7 A 7 21 21 A ADE A . n A 1 8 U 8 22 22 U URI A . n A 1 9 A 9 23 23 A ADE A . n A 1 10 A 10 24 24 A ADE A . n A 1 11 U 11 25 25 U URI A . n A 1 12 C 12 26 26 C CYT A . n A 1 13 G 13 27 27 G GUA A . n A 1 14 C 14 28 28 C CYT A . n A 1 15 G 15 29 29 G GUA A . n A 1 16 U 16 30 30 U URI A . n A 1 17 G 17 31 31 G GUA A . n A 1 18 G 18 32 32 G GUA A . n A 1 19 A 19 33 33 A ADE A . n A 1 20 U 20 34 34 U URI A . n A 1 21 A 21 35 35 A ADE A . n A 1 22 U 22 36 36 U URI A . n A 1 23 G 23 37 37 G GUA A . n A 1 24 G 24 38 38 G GUA A . n A 1 25 C 25 39 39 C CYT A . n A 1 26 A 26 40 40 A ADE A . n A 1 27 C 27 41 41 C CYT A . n A 1 28 G 28 42 42 G GUA A . n A 1 29 C 29 43 43 C CYT A . n A 1 30 A 30 44 44 A ADE A . n A 1 31 A 31 45 45 A ADE A . n A 1 32 G 32 46 46 G GUA A . n A 1 33 U 33 47 47 U URI A . n A 1 34 U 34 48 48 U URI A . n A 1 35 U 35 49 49 U URI A . n A 1 36 C 36 50 50 C CYT A . n A 1 37 U 37 51 51 U URI A . n A 1 38 A 38 52 52 A ADE A . n A 1 39 C 39 53 53 C CYT A . n A 1 40 C 40 54 54 C CYT A . n A 1 41 G 41 55 55 G GUA A . n A 1 42 G 42 56 56 G GUA A . n A 1 43 G 43 57 57 G GUA A . n A 1 44 C 44 58 58 C CYT A . n A 1 45 A 45 59 59 A ADE A . n A 1 46 C 46 60 60 C CYT A . n A 1 47 C 47 61 61 C CYT A . n A 1 48 G 48 62 62 G GUA A . n A 1 49 U 49 63 63 U URI A . n A 1 50 A 50 64 64 A ADE A . n A 1 51 A 51 65 65 A ADE A . n A 1 52 A 52 66 66 A ADE A . n A 1 53 U 53 67 67 U URI A . n A 1 54 G 54 68 68 G GUA A . n A 1 55 U 55 69 69 U URI A . n A 1 56 C 56 70 70 C CYT A . n A 1 57 C 57 71 71 C CYT A . n A 1 58 G 58 72 72 G GUA A . n A 1 59 A 59 73 73 A ADE A . n A 1 60 C 60 74 74 C CYT A . n A 1 61 U 61 75 75 U URI A . n A 1 62 A 62 76 76 A ADE A . n A 1 63 U 63 77 77 U URI A . n A 1 64 G 64 78 78 G GUA A . n A 1 65 U 65 79 79 U URI A . n A 1 66 C 66 80 80 C CYT A . n A 1 67 C 67 81 81 C CYT A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2BP 1 91 91 2BP 2AP A . C 3 ACT 1 96 96 ACT ACT A . D 4 NCO 1 101 101 NCO NCO A . E 4 NCO 1 102 102 NCO NCO A . F 4 NCO 1 103 103 NCO NCO A . G 4 NCO 1 104 104 NCO NCO A . H 4 NCO 1 105 105 NCO NCO A . I 4 NCO 1 107 107 NCO NCO A . J 4 NCO 1 108 108 NCO NCO A . K 4 NCO 1 109 109 NCO NCO A . L 4 NCO 1 110 110 NCO NCO A . M 4 NCO 1 111 111 NCO NCO A . N 4 NCO 1 112 112 NCO NCO A . O 5 HOH 1 500 500 HOH HOH A . O 5 HOH 2 501 501 HOH HOH A . O 5 HOH 3 502 502 HOH HOH A . O 5 HOH 4 503 503 HOH HOH A . O 5 HOH 5 504 504 HOH HOH A . O 5 HOH 6 505 505 HOH HOH A . O 5 HOH 7 506 506 HOH HOH A . O 5 HOH 8 507 507 HOH HOH A . O 5 HOH 9 508 508 HOH HOH A . O 5 HOH 10 509 509 HOH HOH A . O 5 HOH 11 510 510 HOH HOH A . O 5 HOH 12 511 511 HOH HOH A . O 5 HOH 13 512 512 HOH HOH A . O 5 HOH 14 513 513 HOH HOH A . O 5 HOH 15 514 514 HOH HOH A . O 5 HOH 16 515 515 HOH HOH A . O 5 HOH 17 516 516 HOH HOH A . O 5 HOH 18 517 517 HOH HOH A . O 5 HOH 19 518 518 HOH HOH A . O 5 HOH 20 519 519 HOH HOH A . O 5 HOH 21 520 520 HOH HOH A . O 5 HOH 22 521 521 HOH HOH A . O 5 HOH 23 522 522 HOH HOH A . O 5 HOH 24 523 523 HOH HOH A . O 5 HOH 25 524 524 HOH HOH A . O 5 HOH 26 525 525 HOH HOH A . O 5 HOH 27 526 526 HOH HOH A . O 5 HOH 28 527 527 HOH HOH A . O 5 HOH 29 528 528 HOH HOH A . O 5 HOH 30 529 529 HOH HOH A . O 5 HOH 31 530 530 HOH HOH A . O 5 HOH 32 531 531 HOH HOH A . O 5 HOH 33 532 532 HOH HOH A . O 5 HOH 34 533 533 HOH HOH A . O 5 HOH 35 534 534 HOH HOH A . O 5 HOH 36 535 535 HOH HOH A . O 5 HOH 37 536 536 HOH HOH A . O 5 HOH 38 537 537 HOH HOH A . O 5 HOH 39 538 538 HOH HOH A . O 5 HOH 40 539 539 HOH HOH A . O 5 HOH 41 540 540 HOH HOH A . O 5 HOH 42 541 541 HOH HOH A . O 5 HOH 43 542 542 HOH HOH A . O 5 HOH 44 543 543 HOH HOH A . O 5 HOH 45 544 544 HOH HOH A . O 5 HOH 46 545 545 HOH HOH A . O 5 HOH 47 546 546 HOH HOH A . O 5 HOH 48 547 547 HOH HOH A . O 5 HOH 49 548 548 HOH HOH A . O 5 HOH 50 549 549 HOH HOH A . O 5 HOH 51 550 550 HOH HOH A . O 5 HOH 52 551 551 HOH HOH A . O 5 HOH 53 552 552 HOH HOH A . O 5 HOH 54 553 553 HOH HOH A . O 5 HOH 55 554 554 HOH HOH A . O 5 HOH 56 555 555 HOH HOH A . O 5 HOH 57 556 556 HOH HOH A . O 5 HOH 58 557 557 HOH HOH A . O 5 HOH 59 558 558 HOH HOH A . O 5 HOH 60 559 559 HOH HOH A . O 5 HOH 61 560 560 HOH HOH A . O 5 HOH 62 561 561 HOH HOH A . O 5 HOH 63 562 562 HOH HOH A . O 5 HOH 64 563 563 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 CNS refinement . ? 2 d*TREK 'data reduction' . ? 3 d*TREK 'data scaling' . ? 4 CNS phasing . ? 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2BP N9 N Y N 1 2BP C8 C Y N 2 2BP N7 N Y N 3 2BP C5 C Y N 4 2BP C6 C Y N 5 2BP N1 N Y N 6 2BP C2 C Y N 7 2BP N2 N N N 8 2BP N3 N Y N 9 2BP C4 C Y N 10 2BP H8 H N N 11 2BP H6 H N N 12 2BP HN2 H N N 13 2BP HN2A H N N 14 2BP HN9 H N N 15 A OP3 O N N 16 A P P N N 17 A OP1 O N N 18 A OP2 O N N 19 A "O5'" O N N 20 A "C5'" C N N 21 A "C4'" C N R 22 A "O4'" O N N 23 A "C3'" C N S 24 A "O3'" O N N 25 A "C2'" C N R 26 A "O2'" O N N 27 A "C1'" C N R 28 A N9 N Y N 29 A C8 C Y N 30 A N7 N Y N 31 A C5 C Y N 32 A C6 C Y N 33 A N6 N N N 34 A N1 N Y N 35 A C2 C Y N 36 A N3 N Y N 37 A C4 C Y N 38 A HOP3 H N N 39 A HOP2 H N N 40 A "H5'" H N N 41 A "H5''" H N N 42 A "H4'" H N N 43 A "H3'" H N N 44 A "HO3'" H N N 45 A "H2'" H N N 46 A "HO2'" H N N 47 A "H1'" H N N 48 A H8 H N N 49 A H61 H N N 50 A H62 H N N 51 A H2 H N N 52 ACT C C N N 53 ACT O O N N 54 ACT OXT O N N 55 ACT CH3 C N N 56 ACT H1 H N N 57 ACT H2 H N N 58 ACT H3 H N N 59 C OP3 O N N 60 C P P N N 61 C OP1 O N N 62 C OP2 O N N 63 C "O5'" O N N 64 C "C5'" C N N 65 C "C4'" C N R 66 C "O4'" O N N 67 C "C3'" C N S 68 C "O3'" O N N 69 C "C2'" C N R 70 C "O2'" O N N 71 C "C1'" C N R 72 C N1 N N N 73 C C2 C N N 74 C O2 O N N 75 C N3 N N N 76 C C4 C N N 77 C N4 N N N 78 C C5 C N N 79 C C6 C N N 80 C HOP3 H N N 81 C HOP2 H N N 82 C "H5'" H N N 83 C "H5''" H N N 84 C "H4'" H N N 85 C "H3'" H N N 86 C "HO3'" H N N 87 C "H2'" H N N 88 C "HO2'" H N N 89 C "H1'" H N N 90 C H41 H N N 91 C H42 H N N 92 C H5 H N N 93 C H6 H N N 94 G OP3 O N N 95 G P P N N 96 G OP1 O N N 97 G OP2 O N N 98 G "O5'" O N N 99 G "C5'" C N N 100 G "C4'" C N R 101 G "O4'" O N N 102 G "C3'" C N S 103 G "O3'" O N N 104 G "C2'" C N R 105 G "O2'" O N N 106 G "C1'" C N R 107 G N9 N Y N 108 G C8 C Y N 109 G N7 N Y N 110 G C5 C Y N 111 G C6 C N N 112 G O6 O N N 113 G N1 N N N 114 G C2 C N N 115 G N2 N N N 116 G N3 N N N 117 G C4 C Y N 118 G HOP3 H N N 119 G HOP2 H N N 120 G "H5'" H N N 121 G "H5''" H N N 122 G "H4'" H N N 123 G "H3'" H N N 124 G "HO3'" H N N 125 G "H2'" H N N 126 G "HO2'" H N N 127 G "H1'" H N N 128 G H8 H N N 129 G H1 H N N 130 G H21 H N N 131 G H22 H N N 132 HOH O O N N 133 HOH H1 H N N 134 HOH H2 H N N 135 NCO CO CO N N 136 NCO N1 N N N 137 NCO N2 N N N 138 NCO N3 N N N 139 NCO N4 N N N 140 NCO N5 N N N 141 NCO N6 N N N 142 NCO HN11 H N N 143 NCO HN12 H N N 144 NCO HN13 H N N 145 NCO HN21 H N N 146 NCO HN22 H N N 147 NCO HN23 H N N 148 NCO HN31 H N N 149 NCO HN32 H N N 150 NCO HN33 H N N 151 NCO HN41 H N N 152 NCO HN42 H N N 153 NCO HN43 H N N 154 NCO HN51 H N N 155 NCO HN52 H N N 156 NCO HN53 H N N 157 NCO HN61 H N N 158 NCO HN62 H N N 159 NCO HN63 H N N 160 U OP3 O N N 161 U P P N N 162 U OP1 O N N 163 U OP2 O N N 164 U "O5'" O N N 165 U "C5'" C N N 166 U "C4'" C N R 167 U "O4'" O N N 168 U "C3'" C N S 169 U "O3'" O N N 170 U "C2'" C N R 171 U "O2'" O N N 172 U "C1'" C N R 173 U N1 N N N 174 U C2 C N N 175 U O2 O N N 176 U N3 N N N 177 U C4 C N N 178 U O4 O N N 179 U C5 C N N 180 U C6 C N N 181 U HOP3 H N N 182 U HOP2 H N N 183 U "H5'" H N N 184 U "H5''" H N N 185 U "H4'" H N N 186 U "H3'" H N N 187 U "HO3'" H N N 188 U "H2'" H N N 189 U "HO2'" H N N 190 U "H1'" H N N 191 U H3 H N N 192 U H5 H N N 193 U H6 H N N 194 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2BP C8 N9 sing Y N 1 2BP N9 C4 sing Y N 2 2BP C8 N7 doub Y N 3 2BP C8 H8 sing N N 4 2BP N7 C5 sing Y N 5 2BP C5 C4 doub Y N 6 2BP C5 C6 sing Y N 7 2BP C6 N1 doub Y N 8 2BP C6 H6 sing N N 9 2BP N1 C2 sing Y N 10 2BP N3 C2 doub Y N 11 2BP C2 N2 sing N N 12 2BP N2 HN2 sing N N 13 2BP N2 HN2A sing N N 14 2BP C4 N3 sing Y N 15 2BP N9 HN9 sing N N 16 A OP3 P sing N N 17 A OP3 HOP3 sing N N 18 A P OP1 doub N N 19 A P OP2 sing N N 20 A P "O5'" sing N N 21 A OP2 HOP2 sing N N 22 A "O5'" "C5'" sing N N 23 A "C5'" "C4'" sing N N 24 A "C5'" "H5'" sing N N 25 A "C5'" "H5''" sing N N 26 A "C4'" "O4'" sing N N 27 A "C4'" "C3'" sing N N 28 A "C4'" "H4'" sing N N 29 A "O4'" "C1'" sing N N 30 A "C3'" "O3'" sing N N 31 A "C3'" "C2'" sing N N 32 A "C3'" "H3'" sing N N 33 A "O3'" "HO3'" sing N N 34 A "C2'" "O2'" sing N N 35 A "C2'" "C1'" sing N N 36 A "C2'" "H2'" sing N N 37 A "O2'" "HO2'" sing N N 38 A "C1'" N9 sing N N 39 A "C1'" "H1'" sing N N 40 A N9 C8 sing Y N 41 A N9 C4 sing Y N 42 A C8 N7 doub Y N 43 A C8 H8 sing N N 44 A N7 C5 sing Y N 45 A C5 C6 sing Y N 46 A C5 C4 doub Y N 47 A C6 N6 sing N N 48 A C6 N1 doub Y N 49 A N6 H61 sing N N 50 A N6 H62 sing N N 51 A N1 C2 sing Y N 52 A C2 N3 doub Y N 53 A C2 H2 sing N N 54 A N3 C4 sing Y N 55 ACT C O doub N N 56 ACT C OXT sing N N 57 ACT C CH3 sing N N 58 ACT CH3 H1 sing N N 59 ACT CH3 H2 sing N N 60 ACT CH3 H3 sing N N 61 C OP3 P sing N N 62 C OP3 HOP3 sing N N 63 C P OP1 doub N N 64 C P OP2 sing N N 65 C P "O5'" sing N N 66 C OP2 HOP2 sing N N 67 C "O5'" "C5'" sing N N 68 C "C5'" "C4'" sing N N 69 C "C5'" "H5'" sing N N 70 C "C5'" "H5''" sing N N 71 C "C4'" "O4'" sing N N 72 C "C4'" "C3'" sing N N 73 C "C4'" "H4'" sing N N 74 C "O4'" "C1'" sing N N 75 C "C3'" "O3'" sing N N 76 C "C3'" "C2'" sing N N 77 C "C3'" "H3'" sing N N 78 C "O3'" "HO3'" sing N N 79 C "C2'" "O2'" sing N N 80 C "C2'" "C1'" sing N N 81 C "C2'" "H2'" sing N N 82 C "O2'" "HO2'" sing N N 83 C "C1'" N1 sing N N 84 C "C1'" "H1'" sing N N 85 C N1 C2 sing N N 86 C N1 C6 sing N N 87 C C2 O2 doub N N 88 C C2 N3 sing N N 89 C N3 C4 doub N N 90 C C4 N4 sing N N 91 C C4 C5 sing N N 92 C N4 H41 sing N N 93 C N4 H42 sing N N 94 C C5 C6 doub N N 95 C C5 H5 sing N N 96 C C6 H6 sing N N 97 G OP3 P sing N N 98 G OP3 HOP3 sing N N 99 G P OP1 doub N N 100 G P OP2 sing N N 101 G P "O5'" sing N N 102 G OP2 HOP2 sing N N 103 G "O5'" "C5'" sing N N 104 G "C5'" "C4'" sing N N 105 G "C5'" "H5'" sing N N 106 G "C5'" "H5''" sing N N 107 G "C4'" "O4'" sing N N 108 G "C4'" "C3'" sing N N 109 G "C4'" "H4'" sing N N 110 G "O4'" "C1'" sing N N 111 G "C3'" "O3'" sing N N 112 G "C3'" "C2'" sing N N 113 G "C3'" "H3'" sing N N 114 G "O3'" "HO3'" sing N N 115 G "C2'" "O2'" sing N N 116 G "C2'" "C1'" sing N N 117 G "C2'" "H2'" sing N N 118 G "O2'" "HO2'" sing N N 119 G "C1'" N9 sing N N 120 G "C1'" "H1'" sing N N 121 G N9 C8 sing Y N 122 G N9 C4 sing Y N 123 G C8 N7 doub Y N 124 G C8 H8 sing N N 125 G N7 C5 sing Y N 126 G C5 C6 sing N N 127 G C5 C4 doub Y N 128 G C6 O6 doub N N 129 G C6 N1 sing N N 130 G N1 C2 sing N N 131 G N1 H1 sing N N 132 G C2 N2 sing N N 133 G C2 N3 doub N N 134 G N2 H21 sing N N 135 G N2 H22 sing N N 136 G N3 C4 sing N N 137 HOH O H1 sing N N 138 HOH O H2 sing N N 139 NCO CO N1 sing N N 140 NCO CO N2 sing N N 141 NCO CO N3 sing N N 142 NCO CO N4 sing N N 143 NCO CO N5 sing N N 144 NCO CO N6 sing N N 145 NCO N1 HN11 sing N N 146 NCO N1 HN12 sing N N 147 NCO N1 HN13 sing N N 148 NCO N2 HN21 sing N N 149 NCO N2 HN22 sing N N 150 NCO N2 HN23 sing N N 151 NCO N3 HN31 sing N N 152 NCO N3 HN32 sing N N 153 NCO N3 HN33 sing N N 154 NCO N4 HN41 sing N N 155 NCO N4 HN42 sing N N 156 NCO N4 HN43 sing N N 157 NCO N5 HN51 sing N N 158 NCO N5 HN52 sing N N 159 NCO N5 HN53 sing N N 160 NCO N6 HN61 sing N N 161 NCO N6 HN62 sing N N 162 NCO N6 HN63 sing N N 163 U OP3 P sing N N 164 U OP3 HOP3 sing N N 165 U P OP1 doub N N 166 U P OP2 sing N N 167 U P "O5'" sing N N 168 U OP2 HOP2 sing N N 169 U "O5'" "C5'" sing N N 170 U "C5'" "C4'" sing N N 171 U "C5'" "H5'" sing N N 172 U "C5'" "H5''" sing N N 173 U "C4'" "O4'" sing N N 174 U "C4'" "C3'" sing N N 175 U "C4'" "H4'" sing N N 176 U "O4'" "C1'" sing N N 177 U "C3'" "O3'" sing N N 178 U "C3'" "C2'" sing N N 179 U "C3'" "H3'" sing N N 180 U "O3'" "HO3'" sing N N 181 U "C2'" "O2'" sing N N 182 U "C2'" "C1'" sing N N 183 U "C2'" "H2'" sing N N 184 U "O2'" "HO2'" sing N N 185 U "C1'" N1 sing N N 186 U "C1'" "H1'" sing N N 187 U N1 C2 sing N N 188 U N1 C6 sing N N 189 U C2 O2 doub N N 190 U C2 N3 sing N N 191 U N3 C4 sing N N 192 U N3 H3 sing N N 193 U C4 O4 doub N N 194 U C4 C5 sing N N 195 U C5 C6 doub N N 196 U C5 H5 sing N N 197 U C6 H6 sing N N 198 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3G4M 'double helix' 3G4M 'a-form double helix' 3G4M 'mismatched base pair' 3G4M 'internal loop' 3G4M 'triple helix' 3G4M 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 66 1_555 1.038 -0.483 0.467 0.493 -21.754 -8.767 1 A_G16:C80_A A 16 ? A 80 ? 19 1 1 A A 3 1_555 A U 65 1_555 0.238 -0.128 0.513 5.631 -13.781 -0.581 2 A_A17:U79_A A 17 ? A 79 ? 20 1 1 A C 4 1_555 A G 64 1_555 -0.524 -0.219 0.156 8.970 -17.302 -5.882 3 A_C18:G78_A A 18 ? A 78 ? 19 1 1 A A 5 1_555 A U 63 1_555 -0.201 -0.136 0.217 -4.714 -12.883 7.281 4 A_A19:U77_A A 19 ? A 77 ? 20 1 1 A U 6 1_555 A A 62 1_555 -0.326 -0.236 0.061 -4.445 -16.739 1.052 5 A_U20:A76_A A 20 ? A 76 ? 20 1 1 A A 7 1_555 A U 61 1_555 -0.161 -0.166 -0.126 -0.376 -12.030 -0.995 6 A_A21:U75_A A 21 ? A 75 ? 20 1 1 A U 37 1_555 A U 33 1_555 -4.053 -0.663 0.506 -29.918 45.026 -65.356 7 A_U51:U47_A A 51 ? A 47 ? ? ? 1 A A 38 1_555 A U 8 1_555 -0.140 0.001 -0.138 -13.621 3.259 3.541 8 A_A52:U22_A A 52 ? A 22 ? 20 1 1 A C 39 1_555 A G 32 1_555 0.355 0.190 -0.342 18.337 3.596 -0.478 9 A_C53:G46_A A 53 ? A 46 ? 19 1 1 A U 11 1_555 A A 31 1_555 0.006 -0.276 0.059 5.081 -10.577 0.589 10 A_U25:A45_A A 25 ? A 45 ? 20 1 1 A C 12 1_555 A A 30 1_555 -0.671 0.078 0.347 5.970 -12.648 -4.895 11 A_C26:A44_A A 26 ? A 44 ? ? ? 1 A G 13 1_555 A C 29 1_555 -0.272 -0.152 0.407 -7.967 -8.732 6.304 12 A_G27:C43_A A 27 ? A 43 ? 19 1 1 A C 14 1_555 A G 28 1_555 0.060 -0.058 -0.004 7.295 -15.838 3.972 13 A_C28:G42_A A 28 ? A 42 ? 19 1 1 A G 15 1_555 A C 27 1_555 -0.375 -0.175 -0.348 -0.258 -8.870 1.085 14 A_G29:C41_A A 29 ? A 41 ? 19 1 1 A U 16 1_555 A A 26 1_555 -0.031 -0.195 0.188 -0.206 1.510 4.042 15 A_U30:A40_A A 30 ? A 40 ? 20 1 1 A G 17 1_555 A C 25 1_555 0.365 -0.308 -0.146 3.203 -7.853 -2.919 16 A_G31:C39_A A 31 ? A 39 ? 19 1 1 A C 40 1_555 A G 58 1_555 -0.222 -0.208 0.149 -10.281 -11.548 2.915 17 A_C54:G72_A A 54 ? A 72 ? 19 1 1 A G 41 1_555 A C 57 1_555 -0.058 -0.082 0.556 -0.908 -13.435 3.813 18 A_G55:C71_A A 55 ? A 71 ? 19 1 1 A G 42 1_555 A C 56 1_555 -0.331 -0.338 0.006 -0.470 -18.869 -4.341 19 A_G56:C70_A A 56 ? A 70 ? 19 1 1 A G 43 1_555 A U 55 1_555 -2.468 -0.714 0.301 3.315 -15.247 -1.494 20 A_G57:U69_A A 57 ? A 69 ? 28 ? 1 A C 44 1_555 A G 54 1_555 -0.023 -0.298 0.319 3.249 -16.090 -2.156 21 A_C58:G68_A A 58 ? A 68 ? 19 1 1 A A 45 1_555 A U 53 1_555 0.409 -0.036 -0.170 -5.137 -14.447 -3.951 22 A_A59:U67_A A 59 ? A 67 ? 20 1 1 A C 46 1_555 A G 24 1_555 -0.075 0.096 0.257 -16.567 -10.670 1.049 23 A_C60:G38_A A 60 ? A 38 ? 19 1 1 A C 47 1_555 A G 23 1_555 0.388 -0.178 0.638 -3.518 -11.846 -4.882 24 A_C61:G37_A A 61 ? A 37 ? 19 1 1 A A 50 1_555 A A 21 1_555 4.661 1.395 0.701 1.949 5.540 -112.417 25 A_A64:A35_A A 64 ? A 35 ? 5 4 1 A G 48 1_555 A U 49 1_555 8.024 1.334 0.654 1.042 -2.350 13.933 26 A_G62:U63_A A 62 ? A 63 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 66 1_555 A A 3 1_555 A U 65 1_555 0.528 -2.439 2.881 1.439 9.720 34.061 -5.131 -0.702 2.146 16.180 -2.396 35.410 1 AA_G16A17:U79C80_AA A 16 ? A 80 ? A 17 ? A 79 ? 1 A A 3 1_555 A U 65 1_555 A C 4 1_555 A G 64 1_555 0.505 -1.479 3.157 2.433 7.073 26.664 -4.662 -0.517 2.716 14.967 -5.149 27.675 2 AA_A17C18:G78U79_AA A 17 ? A 79 ? A 18 ? A 78 ? 1 A C 4 1_555 A G 64 1_555 A A 5 1_555 A U 63 1_555 1.049 -1.791 3.322 0.407 13.907 32.989 -4.755 -1.656 2.408 23.245 -0.680 35.728 3 AA_C18A19:U77G78_AA A 18 ? A 78 ? A 19 ? A 77 ? 1 A A 5 1_555 A U 63 1_555 A U 6 1_555 A A 62 1_555 -0.638 -1.521 3.196 0.692 11.649 31.706 -4.318 1.200 2.485 20.474 -1.217 33.734 4 AA_A19U20:A76U77_AA A 19 ? A 77 ? A 20 ? A 76 ? 1 A U 6 1_555 A A 62 1_555 A A 7 1_555 A U 61 1_555 0.680 -1.540 3.171 3.739 17.151 30.654 -4.758 -0.642 2.110 29.594 -6.451 35.219 5 AA_U20A21:U75A76_AA A 20 ? A 76 ? A 21 ? A 75 ? 1 A A 7 1_555 A U 61 1_555 A U 37 1_555 A U 33 1_555 -1.473 6.153 1.979 24.359 9.995 160.331 3.105 0.784 2.016 5.070 -12.355 160.853 6 AA_A21U51:U47U75_AA A 21 ? A 75 ? A 51 ? A 47 ? 1 A U 37 1_555 A U 33 1_555 A A 38 1_555 A U 8 1_555 -0.013 -0.701 3.301 -5.934 27.467 4.042 -6.777 -1.128 -0.201 80.131 17.312 28.384 7 AA_U51A52:U22U47_AA A 51 ? A 47 ? A 52 ? A 22 ? 1 A A 38 1_555 A U 8 1_555 A C 39 1_555 A G 32 1_555 2.048 -0.338 2.596 1.826 12.747 44.190 -1.308 -2.499 2.490 16.531 -2.368 45.938 8 AA_A52C53:G46U22_AA A 52 ? A 22 ? A 53 ? A 46 ? 1 A C 39 1_555 A G 32 1_555 A U 11 1_555 A A 31 1_555 -2.374 -0.368 3.441 -15.152 0.110 51.127 -0.419 1.536 3.948 0.124 17.131 53.180 9 AA_C53U25:A45G46_AA A 53 ? A 46 ? A 25 ? A 45 ? 1 A U 11 1_555 A A 31 1_555 A C 12 1_555 A A 30 1_555 -0.625 -2.413 3.204 -3.854 4.797 22.601 -7.445 0.337 2.708 11.957 9.607 23.413 10 AA_U25C26:A44A45_AA A 25 ? A 45 ? A 26 ? A 44 ? 1 A C 12 1_555 A A 30 1_555 A G 13 1_555 A C 29 1_555 -0.154 -2.128 3.379 -1.094 8.700 37.852 -4.225 0.103 2.843 13.196 1.659 38.818 11 AA_C26G27:C43A44_AA A 26 ? A 44 ? A 27 ? A 43 ? 1 A G 13 1_555 A C 29 1_555 A C 14 1_555 A G 28 1_555 0.987 -2.172 2.943 7.754 1.559 24.480 -5.288 -0.197 2.968 3.560 -17.705 25.707 12 AA_G27C28:G42C43_AA A 27 ? A 43 ? A 28 ? A 42 ? 1 A C 14 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -0.776 -1.650 3.328 -0.759 12.726 29.080 -5.178 1.292 2.430 23.945 1.429 31.697 13 AA_C28G29:C41G42_AA A 28 ? A 42 ? A 29 ? A 41 ? 1 A G 15 1_555 A C 27 1_555 A U 16 1_555 A A 26 1_555 0.044 -1.237 3.370 -5.522 11.451 32.125 -3.809 -0.904 2.739 19.754 9.526 34.488 14 AA_G29U30:A40C41_AA A 29 ? A 41 ? A 30 ? A 40 ? 1 A U 16 1_555 A A 26 1_555 A G 17 1_555 A C 25 1_555 0.394 -1.721 3.152 3.331 1.787 34.943 -3.106 -0.176 3.086 2.965 -5.527 35.140 15 AA_U30G31:C39A40_AA A 30 ? A 40 ? A 31 ? A 39 ? 1 A C 40 1_555 A G 58 1_555 A G 41 1_555 A C 57 1_555 -0.383 -1.534 3.007 0.144 1.965 36.686 -2.678 0.625 2.923 3.119 -0.228 36.737 16 AA_C54G55:C71G72_AA A 54 ? A 72 ? A 55 ? A 71 ? 1 A G 41 1_555 A C 57 1_555 A G 42 1_555 A C 56 1_555 -0.427 -0.728 3.248 2.234 14.365 29.883 -3.554 1.103 2.598 26.009 -4.045 33.159 17 AA_G55G56:C70C71_AA A 55 ? A 71 ? A 56 ? A 70 ? 1 A G 42 1_555 A C 56 1_555 A G 43 1_555 A U 55 1_555 0.042 -1.430 2.970 -5.549 5.859 26.475 -4.216 -1.247 2.539 12.431 11.773 27.656 18 AA_G56G57:U69C70_AA A 56 ? A 70 ? A 57 ? A 69 ? 1 A G 43 1_555 A U 55 1_555 A C 44 1_555 A G 54 1_555 0.224 -1.338 3.245 -1.684 2.406 43.252 -2.040 -0.464 3.159 3.260 2.281 43.347 19 AA_G57C58:G68U69_AA A 57 ? A 69 ? A 58 ? A 68 ? 1 A C 44 1_555 A G 54 1_555 A A 45 1_555 A U 53 1_555 0.111 -1.826 3.563 4.358 4.484 35.275 -3.652 0.483 3.303 7.328 -7.123 35.807 20 AA_C58A59:U67G68_AA A 58 ? A 68 ? A 59 ? A 67 ? 1 A A 45 1_555 A U 53 1_555 A C 46 1_555 A G 24 1_555 2.223 -0.478 3.207 3.581 7.747 52.480 -1.026 -2.259 3.246 8.695 -4.019 53.121 21 AA_A59C60:G38U67_AA A 59 ? A 67 ? A 60 ? A 38 ? 1 A C 46 1_555 A G 24 1_555 A C 47 1_555 A G 23 1_555 -0.504 -0.573 3.194 -1.820 4.227 30.059 -1.913 0.608 3.111 8.091 3.484 30.401 22 AA_C60C61:G37G38_AA A 60 ? A 38 ? A 61 ? A 37 ? 1 A C 47 1_555 A G 23 1_555 A A 50 1_555 A A 21 1_555 2.453 3.562 3.227 62.207 -158.711 -111.557 -0.745 1.635 4.029 80.121 31.404 -174.643 23 AA_C61A64:A35G37_AA A 61 ? A 37 ? A 64 ? A 35 ? 1 A A 50 1_555 A A 21 1_555 A G 48 1_555 A U 49 1_555 -3.071 -4.356 0.361 15.787 -175.343 5.858 -0.079 1.726 4.076 -89.537 -8.062 176.058 24 AA_A64G62:U63A35_AA A 64 ? A 35 ? A 62 ? A 63 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 9H-purin-2-amine 2BP 3 'ACETATE ION' ACT 4 'COBALT HEXAMMINE(III)' NCO 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1U8D _pdbx_initial_refinement_model.details ? #