HEADER TRANSCRIPTION/DNA 07-FEB-09 3G6P TITLE GR DNA BINDING DOMAIN:FKBP5 COMPLEX, 18BP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3'); COMPND 4 CHAIN: C; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: GR BINDING SITE FKBP5 TOP STRAND; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3'); COMPND 10 CHAIN: D; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: GR BINDING SITE FKBP5 BOTTOM STRAND; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: GLUCOCORTICOID RECEPTOR; COMPND 15 CHAIN: A, B; COMPND 16 FRAGMENT: UNP RESIDUES 440-525; COMPND 17 SYNONYM: GR, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 1; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 7 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 8 ORGANISM_TAXID: 10116; SOURCE 9 GENE: GRL, NR3C1; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GLUCOCORTICOID, DNA-BINDING, ALLOSTERY, LEVER ARM, TRANSCRIPTION, KEYWDS 2 HORMONE, ALTERNATIVE INITIATION, CHROMATIN REGULATOR, CYTOPLASM, KEYWDS 3 LIPID-BINDING, METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, KEYWDS 4 RECEPTOR, STEROID-BINDING, TRANSCRIPTION REGULATION, UBL KEYWDS 5 CONJUGATION, ZINC, ZINC-FINGER, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.PUFALL,K.R.YAMAMOTO,S.H.MEIJSING REVDAT 4 06-SEP-23 3G6P 1 REMARK SEQADV REVDAT 3 01-NOV-17 3G6P 1 REMARK REVDAT 2 02-JUN-09 3G6P 1 JRNL REVDAT 1 21-APR-09 3G6P 0 JRNL AUTH S.H.MEIJSING,M.A.PUFALL,A.Y.SO,D.L.BATES,L.CHEN,K.R.YAMAMOTO JRNL TITL DNA BINDING SITE SEQUENCE DIRECTS GLUCOCORTICOID RECEPTOR JRNL TITL 2 STRUCTURE AND ACTIVITY. JRNL REF SCIENCE V. 324 407 2009 JRNL REFN ISSN 0036-8075 JRNL PMID 19372434 JRNL DOI 10.1126/SCIENCE.1164265 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 30728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.510 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6967 - 4.2714 0.99 3107 216 0.1781 0.2082 REMARK 3 2 4.2714 - 3.3921 0.99 2959 207 0.1782 0.1908 REMARK 3 3 3.3921 - 2.9638 0.98 2875 200 0.2019 0.2319 REMARK 3 4 2.9638 - 2.6930 0.99 2913 203 0.2125 0.2274 REMARK 3 5 2.6930 - 2.5001 1.00 2894 201 0.2155 0.2895 REMARK 3 6 2.5001 - 2.3528 0.99 2894 201 0.2218 0.2564 REMARK 3 7 2.3528 - 2.2350 1.00 2882 201 0.2313 0.2808 REMARK 3 8 2.2350 - 2.1377 1.00 2879 200 0.2719 0.2986 REMARK 3 9 2.1377 - 2.0555 1.00 2844 198 0.3257 0.3728 REMARK 3 10 2.0555 - 1.9850 0.86 2481 173 0.4198 0.3992 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 52.54 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -13.9439 17.9333 -20.7017 REMARK 3 T TENSOR REMARK 3 T11: 0.3963 T22: 0.3629 REMARK 3 T33: 0.3680 T12: -0.0901 REMARK 3 T13: -0.0090 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 0.7334 L22: 1.8088 REMARK 3 L33: 1.6279 L12: 0.3596 REMARK 3 L13: -0.3009 L23: 0.9762 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: 0.2799 S13: 0.0908 REMARK 3 S21: -0.5860 S22: 0.1579 S23: 0.0262 REMARK 3 S31: -0.3637 S32: -0.1467 S33: -0.1090 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -8.9641 17.8241 7.3014 REMARK 3 T TENSOR REMARK 3 T11: 0.2318 T22: 0.3536 REMARK 3 T33: 0.3791 T12: 0.0320 REMARK 3 T13: 0.0486 T23: 0.0869 REMARK 3 L TENSOR REMARK 3 L11: 0.7369 L22: 1.2606 REMARK 3 L33: 2.2909 L12: 0.7929 REMARK 3 L13: 0.9952 L23: -1.2453 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: -0.2090 S13: -0.1101 REMARK 3 S21: 0.1010 S22: 0.3404 S23: 0.1984 REMARK 3 S31: 0.0140 S32: -0.4165 S33: -0.3168 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -10.8625 2.1497 -9.2445 REMARK 3 T TENSOR REMARK 3 T11: 0.8908 T22: 0.3781 REMARK 3 T33: 0.3781 T12: -0.1370 REMARK 3 T13: -0.1101 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.0800 L22: -0.1709 REMARK 3 L33: 0.9625 L12: -0.5839 REMARK 3 L13: 0.9821 L23: 0.4390 REMARK 3 S TENSOR REMARK 3 S11: 0.4136 S12: 0.0346 S13: -0.3841 REMARK 3 S21: -0.0278 S22: 0.1647 S23: -0.0485 REMARK 3 S31: 0.8535 S32: 0.0151 S33: -0.4601 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -9.4683 2.3157 -5.8382 REMARK 3 T TENSOR REMARK 3 T11: 0.7831 T22: 0.4164 REMARK 3 T33: 0.3588 T12: -0.0685 REMARK 3 T13: -0.0097 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 0.9274 L22: -0.1574 REMARK 3 L33: 0.5877 L12: -0.8391 REMARK 3 L13: 0.8375 L23: 0.2650 REMARK 3 S TENSOR REMARK 3 S11: 0.2236 S12: -0.0553 S13: -0.3005 REMARK 3 S21: 0.2502 S22: 0.1578 S23: 0.1099 REMARK 3 S31: 0.9482 S32: -0.2170 S33: -0.2491 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3G6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051491. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115894 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30730 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.03100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1GLU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM NA CACODYLATE PH 6.0, 1MM REMARK 280 SPERMIDINE, 20MM MGCL2, 2MM CACL2, 10% 1,5-HEXANEDIOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.53000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.20500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.05500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.20500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.53000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.05500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 436 REMARK 465 LYS A 511 REMARK 465 THR A 512 REMARK 465 LYS A 513 REMARK 465 LYS A 514 REMARK 465 LYS A 515 REMARK 465 ILE A 516 REMARK 465 LYS A 517 REMARK 465 GLY A 518 REMARK 465 ILE A 519 REMARK 465 GLN A 520 REMARK 465 GLN A 521 REMARK 465 ALA A 522 REMARK 465 THR A 523 REMARK 465 ALA A 524 REMARK 465 GLY A 525 REMARK 465 GLY B 436 REMARK 465 GLY B 518 REMARK 465 ILE B 519 REMARK 465 GLN B 520 REMARK 465 GLN B 521 REMARK 465 ALA B 522 REMARK 465 THR B 523 REMARK 465 ALA B 524 REMARK 465 GLY B 525 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 437 OG REMARK 470 SER B 437 OG REMARK 470 LYS B 514 CG CD CE NZ REMARK 470 LYS B 515 CG CD CE NZ REMARK 470 ILE B 516 CG1 CG2 CD1 REMARK 470 LYS B 517 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 1 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA C 6 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 DC C 10 O5' - C5' - C4' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC C 11 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DT C 12 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG C 13 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DG C 13 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 DC C 16 O4' - C1' - N1 ANGL. DEV. = -5.5 DEGREES REMARK 500 DT C 17 O4' - C1' - N1 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG C 18 O4' - C1' - N9 ANGL. DEV. = -5.7 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 DC D 2 O5' - C5' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DC D 2 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG D 4 O5' - C5' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG D 4 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA D 5 O4' - C1' - N9 ANGL. DEV. = -4.7 DEGREES REMARK 500 DG D 10 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT D 12 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT D 15 O4' - C1' - N1 ANGL. DEV. = -4.8 DEGREES REMARK 500 DC D 16 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT D 17 O4' - C1' - N1 ANGL. DEV. = -8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 471 46.89 35.29 REMARK 500 ASP B 481 38.11 -142.00 REMARK 500 ILE B 516 138.30 -173.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ACT C 19 REMARK 610 ACT A 1 REMARK 610 ACT A 3 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1514 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 440 SG REMARK 620 2 CYS A 443 SG 112.5 REMARK 620 3 CYS A 457 SG 114.2 103.4 REMARK 620 4 CYS A 460 SG 113.4 113.0 99.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1515 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 476 SG REMARK 620 2 CYS A 482 SG 102.5 REMARK 620 3 CYS A 492 SG 113.1 114.9 REMARK 620 4 CYS A 495 SG 107.5 112.5 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1512 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 440 SG REMARK 620 2 CYS B 443 SG 119.2 REMARK 620 3 CYS B 457 SG 116.5 103.4 REMARK 620 4 CYS B 460 SG 109.0 108.2 98.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1513 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 476 SG REMARK 620 2 CYS B 482 SG 101.6 REMARK 620 3 CYS B 492 SG 111.4 115.4 REMARK 620 4 CYS B 495 SG 107.6 112.5 108.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 19 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1513 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FYL RELATED DB: PDB REMARK 900 SAME PROTEIN, DIFFERENT DNA REMARK 900 RELATED ID: 3G6Q RELATED DB: PDB REMARK 900 SAME DNA BINDING SITE, INSERTION MUTATION GR GAMMA REMARK 900 RELATED ID: 3G6R RELATED DB: PDB REMARK 900 RELATED ID: 3G6T RELATED DB: PDB REMARK 900 RELATED ID: 3G6U RELATED DB: PDB REMARK 900 RELATED ID: 3G8X RELATED DB: PDB REMARK 900 RELATED ID: 3G97 RELATED DB: PDB REMARK 900 RELATED ID: 3G99 RELATED DB: PDB DBREF 3G6P B 440 525 UNP P06536 GCR_RAT 440 525 DBREF 3G6P A 440 525 UNP P06536 GCR_RAT 440 525 DBREF 3G6P C 1 18 PDB 3G6P 3G6P 1 18 DBREF 3G6P D 1 18 PDB 3G6P 3G6P 1 18 SEQADV 3G6P GLY B 436 UNP P06536 EXPRESSION TAG SEQADV 3G6P SER B 437 UNP P06536 EXPRESSION TAG SEQADV 3G6P HIS B 438 UNP P06536 EXPRESSION TAG SEQADV 3G6P MET B 439 UNP P06536 EXPRESSION TAG SEQADV 3G6P GLY A 436 UNP P06536 EXPRESSION TAG SEQADV 3G6P SER A 437 UNP P06536 EXPRESSION TAG SEQADV 3G6P HIS A 438 UNP P06536 EXPRESSION TAG SEQADV 3G6P MET A 439 UNP P06536 EXPRESSION TAG SEQRES 1 C 18 DC DC DA DG DA DA DC DA DC DC DC DT DG SEQRES 2 C 18 DT DT DC DT DG SEQRES 1 D 18 DC DC DA DG DA DA DC DA DG DG DG DT DG SEQRES 2 D 18 DT DT DC DT DG SEQRES 1 A 90 GLY SER HIS MET CYS LEU VAL CYS SER ASP GLU ALA SER SEQRES 2 A 90 GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS SEQRES 3 A 90 VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS ASN TYR SEQRES 4 A 90 LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP LYS ILE SEQRES 5 A 90 ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG LYS CYS SEQRES 6 A 90 LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS THR LYS SEQRES 7 A 90 LYS LYS ILE LYS GLY ILE GLN GLN ALA THR ALA GLY SEQRES 1 B 90 GLY SER HIS MET CYS LEU VAL CYS SER ASP GLU ALA SER SEQRES 2 B 90 GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS SEQRES 3 B 90 VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS ASN TYR SEQRES 4 B 90 LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP LYS ILE SEQRES 5 B 90 ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG LYS CYS SEQRES 6 B 90 LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS THR LYS SEQRES 7 B 90 LYS LYS ILE LYS GLY ILE GLN GLN ALA THR ALA GLY HET ACT C 19 3 HET ZN A1514 1 HET ZN A1515 1 HET ACT A 1 3 HET ACT A 3 3 HET ZN B1512 1 HET ZN B1513 1 HETNAM ACT ACETATE ION HETNAM ZN ZINC ION FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 6 ZN 4(ZN 2+) FORMUL 12 HOH *115(H2 O) HELIX 1 1 CYS A 457 GLN A 471 1 15 HELIX 2 2 CYS A 492 GLY A 504 1 13 HELIX 3 3 CYS B 457 GLY B 470 1 14 HELIX 4 4 CYS B 492 ALA B 503 1 12 HELIX 5 5 GLU B 508 LYS B 514 1 7 SHEET 1 A 2 GLY A 449 HIS A 451 0 SHEET 2 A 2 VAL A 454 THR A 456 -1 O VAL A 454 N HIS A 451 SHEET 1 B 2 GLY B 449 HIS B 451 0 SHEET 2 B 2 VAL B 454 THR B 456 -1 O VAL B 454 N HIS B 451 LINK SG CYS A 440 ZN ZN A1514 1555 1555 2.35 LINK SG CYS A 443 ZN ZN A1514 1555 1555 2.44 LINK SG CYS A 457 ZN ZN A1514 1555 1555 2.37 LINK SG CYS A 460 ZN ZN A1514 1555 1555 2.34 LINK SG CYS A 476 ZN ZN A1515 1555 1555 2.33 LINK SG CYS A 482 ZN ZN A1515 1555 1555 2.24 LINK SG CYS A 492 ZN ZN A1515 1555 1555 2.33 LINK SG CYS A 495 ZN ZN A1515 1555 1555 2.37 LINK SG CYS B 440 ZN ZN B1512 1555 1555 2.23 LINK SG CYS B 443 ZN ZN B1512 1555 1555 2.36 LINK SG CYS B 457 ZN ZN B1512 1555 1555 2.35 LINK SG CYS B 460 ZN ZN B1512 1555 1555 2.33 LINK SG CYS B 476 ZN ZN B1513 1555 1555 2.31 LINK SG CYS B 482 ZN ZN B1513 1555 1555 2.28 LINK SG CYS B 492 ZN ZN B1513 1555 1555 2.37 LINK SG CYS B 495 ZN ZN B1513 1555 1555 2.33 CISPEP 1 ILE B 516 LYS B 517 0 -0.36 SITE 1 AC1 3 DA C 8 DC C 9 DG D 13 SITE 1 AC2 4 CYS A 440 CYS A 443 CYS A 457 CYS A 460 SITE 1 AC3 4 CYS A 476 CYS A 482 CYS A 492 CYS A 495 SITE 1 AC4 2 ASN A 491 HOH C 37 SITE 1 AC5 4 HOH A 66 ASP A 481 CYS A 482 ARG A 498 SITE 1 AC6 4 CYS B 440 CYS B 443 CYS B 457 CYS B 460 SITE 1 AC7 4 CYS B 476 CYS B 482 CYS B 492 CYS B 495 CRYST1 39.060 100.110 112.410 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025602 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008896 0.00000