HEADER TRANSCRIPTION/DNA 08-FEB-09 3G6R TITLE GR DNA BINDING DOMAIN:FKBP5 COMPLEX-52, 18BP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3'); COMPND 4 CHAIN: C; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FKBP5 BINDING SITE TOP STRAND 18BP; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3'); COMPND 10 CHAIN: D; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: FKBP5 BINDING SITE BOTTOM STRAND 18BP; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: GLUCOCORTICOID RECEPTOR; COMPND 15 CHAIN: B, A; COMPND 16 FRAGMENT: UNP RESIDUES 440-525; COMPND 17 SYNONYM: GR, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 1; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 7 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 8 ORGANISM_TAXID: 10116; SOURCE 9 GENE: GRL, NR3C1; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GLUCOCORTICOID, DNA-BINDING, ALLOSTERY, LEVER ARM, TRANSCRIPTION, KEYWDS 2 HORMONE, ALTERNATIVE INITIATION, CHROMATIN REGULATOR, CYTOPLASM, KEYWDS 3 LIPID-BINDING, METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, KEYWDS 4 RECEPTOR, STEROID-BINDING, TRANSCRIPTION REGULATION, UBL KEYWDS 5 CONJUGATION, ZINC, ZINC-FINGER, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.PUFALL,K.R.YAMAMOTO,S.H.MEIJSING REVDAT 4 06-SEP-23 3G6R 1 SEQADV REVDAT 3 01-NOV-17 3G6R 1 REMARK REVDAT 2 02-JUN-09 3G6R 1 JRNL REVDAT 1 21-APR-09 3G6R 0 JRNL AUTH S.H.MEIJSING,M.A.PUFALL,A.Y.SO,D.L.BATES,L.CHEN,K.R.YAMAMOTO JRNL TITL DNA BINDING SITE SEQUENCE DIRECTS GLUCOCORTICOID RECEPTOR JRNL TITL 2 STRUCTURE AND ACTIVITY. JRNL REF SCIENCE V. 324 407 2009 JRNL REFN ISSN 0036-8075 JRNL PMID 19372434 JRNL DOI 10.1126/SCIENCE.1164265 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.150 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 18599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2061 - 4.9548 1.00 2004 223 0.1784 0.2220 REMARK 3 2 4.9548 - 3.9333 1.00 1921 214 0.1421 0.1814 REMARK 3 3 3.9333 - 3.4363 0.99 1885 209 0.1573 0.2113 REMARK 3 4 3.4363 - 3.1221 0.97 1806 201 0.1763 0.2401 REMARK 3 5 3.1221 - 2.8984 0.97 1818 202 0.1972 0.2423 REMARK 3 6 2.8984 - 2.7275 0.95 1781 197 0.2039 0.2871 REMARK 3 7 2.7275 - 2.5909 0.92 1699 186 0.2152 0.2654 REMARK 3 8 2.5909 - 2.4782 0.85 1562 170 0.2187 0.2808 REMARK 3 9 2.4782 - 2.3828 0.71 1333 147 0.2439 0.2892 REMARK 3 10 2.3828 - 2.3000 0.51 944 97 0.2611 0.3332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 49.38 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 2.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 NULL REMARK 3 ANGLE : 1.301 NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 9.8268 17.8795 -6.6130 REMARK 3 T TENSOR REMARK 3 T11: 0.2305 T22: 0.2978 REMARK 3 T33: 0.3574 T12: -0.0231 REMARK 3 T13: 0.0036 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.9787 L22: 1.5930 REMARK 3 L33: 0.9129 L12: 0.1906 REMARK 3 L13: -0.9294 L23: 0.1421 REMARK 3 S TENSOR REMARK 3 S11: -0.0401 S12: 0.1841 S13: -0.0900 REMARK 3 S21: -0.1308 S22: 0.1956 S23: -0.0151 REMARK 3 S31: 0.2236 S32: -0.1105 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 14.9593 18.0954 20.3441 REMARK 3 T TENSOR REMARK 3 T11: 0.4063 T22: 0.3569 REMARK 3 T33: 0.3945 T12: -0.0445 REMARK 3 T13: -0.0288 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.6482 L22: 1.4602 REMARK 3 L33: 1.0751 L12: 0.2881 REMARK 3 L13: 0.0445 L23: -0.8539 REMARK 3 S TENSOR REMARK 3 S11: 0.2899 S12: -0.2669 S13: -0.0466 REMARK 3 S21: 0.7794 S22: -0.1809 S23: -0.0841 REMARK 3 S31: -0.2240 S32: -0.0452 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 10.7733 2.3328 9.5112 REMARK 3 T TENSOR REMARK 3 T11: 0.6609 T22: 0.4014 REMARK 3 T33: 0.3338 T12: 0.0347 REMARK 3 T13: -0.0764 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 0.4931 L22: 0.3461 REMARK 3 L33: 0.0074 L12: 0.6385 REMARK 3 L13: -0.0051 L23: 0.0293 REMARK 3 S TENSOR REMARK 3 S11: 0.3151 S12: 0.0139 S13: -0.1889 REMARK 3 S21: 0.1633 S22: 0.0795 S23: -0.0843 REMARK 3 S31: 0.5886 S32: -0.1042 S33: -0.0005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 9.2826 2.4788 5.6474 REMARK 3 T TENSOR REMARK 3 T11: 0.5175 T22: 0.4317 REMARK 3 T33: 0.3630 T12: -0.0098 REMARK 3 T13: -0.0318 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.7899 L22: 0.6367 REMARK 3 L33: 0.2308 L12: 0.1067 REMARK 3 L13: 0.2666 L23: -0.0274 REMARK 3 S TENSOR REMARK 3 S11: 0.1252 S12: -0.0420 S13: -0.1546 REMARK 3 S21: 0.1168 S22: 0.0727 S23: -0.0163 REMARK 3 S31: 0.3901 S32: -0.0007 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3G6R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051493. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282963 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19913 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50800 REMARK 200 R SYM FOR SHELL (I) : 0.39400 REMARK 200 FOR SHELL : 1.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1GLU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM NA CACODYLATE, PH 6.5, 2.25MM REMARK 280 SPERMINE, 18MM MGCL2, 9% ISOPROPANOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.84400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.27500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.27500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.84400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 436 REMARK 465 LYS B 511 REMARK 465 THR B 512 REMARK 465 LYS B 513 REMARK 465 LYS B 514 REMARK 465 LYS B 515 REMARK 465 ILE B 516 REMARK 465 LYS B 517 REMARK 465 GLY B 518 REMARK 465 ILE B 519 REMARK 465 GLN B 520 REMARK 465 GLN B 521 REMARK 465 ALA B 522 REMARK 465 THR B 523 REMARK 465 ALA B 524 REMARK 465 GLY B 525 REMARK 465 GLY A 436 REMARK 465 ILE A 516 REMARK 465 LYS A 517 REMARK 465 GLY A 518 REMARK 465 ILE A 519 REMARK 465 GLN A 520 REMARK 465 GLN A 521 REMARK 465 ALA A 522 REMARK 465 THR A 523 REMARK 465 ALA A 524 REMARK 465 GLY A 525 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 437 OG REMARK 470 ARG B 510 CG CD NE CZ NH1 NH2 REMARK 470 SER A 437 OG REMARK 470 LYS A 514 CG CD CE NZ REMARK 470 LYS A 515 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 1 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC C 2 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 DA C 5 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 DA C 8 O4' - C1' - N9 ANGL. DEV. = -5.6 DEGREES REMARK 500 DG C 9 O4' - C1' - N9 ANGL. DEV. = -6.0 DEGREES REMARK 500 DG C 10 O4' - C1' - N9 ANGL. DEV. = -8.3 DEGREES REMARK 500 DG C 11 O4' - C1' - N9 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG C 11 C2 - N3 - C4 ANGL. DEV. = -3.5 DEGREES REMARK 500 DT C 14 O4' - C1' - N1 ANGL. DEV. = -7.7 DEGREES REMARK 500 DT C 17 O4' - C1' - N1 ANGL. DEV. = -5.5 DEGREES REMARK 500 DT C 17 N3 - C4 - O4 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG C 18 O4' - C1' - N9 ANGL. DEV. = -8.3 DEGREES REMARK 500 DC D 2 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DC D 10 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC D 10 C5 - C4 - N4 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT D 12 C4 - C5 - C7 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC D 16 O4' - C1' - N1 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT D 17 O4' - C1' - N1 ANGL. DEV. = -5.3 DEGREES REMARK 500 DG D 18 O4' - C1' - N9 ANGL. DEV. = -7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 438 29.23 -153.67 REMARK 500 LEU B 455 108.85 -54.52 REMARK 500 ASP B 481 34.48 -145.28 REMARK 500 ASP B 485 -167.56 -115.99 REMARK 500 GLU B 508 78.35 -110.75 REMARK 500 ASP A 481 40.66 -143.82 REMARK 500 ASP A 485 -169.66 -123.11 REMARK 500 ARG A 488 0.29 -69.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1514 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 440 SG REMARK 620 2 CYS B 443 SG 104.3 REMARK 620 3 CYS B 457 SG 111.4 105.7 REMARK 620 4 CYS B 460 SG 113.1 115.0 107.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1515 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 476 SG REMARK 620 2 CYS B 482 SG 109.3 REMARK 620 3 CYS B 492 SG 117.9 111.8 REMARK 620 4 CYS B 495 SG 107.0 105.1 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1512 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 440 SG REMARK 620 2 CYS A 443 SG 107.9 REMARK 620 3 CYS A 457 SG 118.5 109.8 REMARK 620 4 CYS A 460 SG 105.7 110.8 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1513 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 476 SG REMARK 620 2 CYS A 482 SG 102.1 REMARK 620 3 CYS A 492 SG 115.1 116.0 REMARK 620 4 CYS A 495 SG 104.9 107.0 110.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1513 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FYL RELATED DB: PDB REMARK 900 SAME PROTEIN, DIFFERENT DNA REMARK 900 RELATED ID: 3G6Q RELATED DB: PDB REMARK 900 SAME DNA BINDING SITE, INSERTION MUTATION GR GAMMA REMARK 900 RELATED ID: 3G6P RELATED DB: PDB REMARK 900 SAME COMPLEX, DIFFERENT CRYSTAL CONDITION REMARK 900 RELATED ID: 3G6T RELATED DB: PDB REMARK 900 RELATED ID: 3G6U RELATED DB: PDB REMARK 900 RELATED ID: 3G8X RELATED DB: PDB REMARK 900 RELATED ID: 3G97 RELATED DB: PDB DBREF 3G6R B 440 525 UNP P06536 GCR_RAT 440 525 DBREF 3G6R A 440 525 UNP P06536 GCR_RAT 440 525 DBREF 3G6R C 1 18 PDB 3G6R 3G6R 1 18 DBREF 3G6R D 1 18 PDB 3G6R 3G6R 1 18 SEQADV 3G6R GLY B 436 UNP P06536 EXPRESSION TAG SEQADV 3G6R SER B 437 UNP P06536 EXPRESSION TAG SEQADV 3G6R HIS B 438 UNP P06536 EXPRESSION TAG SEQADV 3G6R MET B 439 UNP P06536 EXPRESSION TAG SEQADV 3G6R GLY A 436 UNP P06536 EXPRESSION TAG SEQADV 3G6R SER A 437 UNP P06536 EXPRESSION TAG SEQADV 3G6R HIS A 438 UNP P06536 EXPRESSION TAG SEQADV 3G6R MET A 439 UNP P06536 EXPRESSION TAG SEQRES 1 C 18 DC DC DA DG DA DA DC DA DG DG DG DT DG SEQRES 2 C 18 DT DT DC DT DG SEQRES 1 D 18 DC DC DA DG DA DA DC DA DC DC DC DT DG SEQRES 2 D 18 DT DT DC DT DG SEQRES 1 B 90 GLY SER HIS MET CYS LEU VAL CYS SER ASP GLU ALA SER SEQRES 2 B 90 GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS SEQRES 3 B 90 VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS ASN TYR SEQRES 4 B 90 LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP LYS ILE SEQRES 5 B 90 ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG LYS CYS SEQRES 6 B 90 LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS THR LYS SEQRES 7 B 90 LYS LYS ILE LYS GLY ILE GLN GLN ALA THR ALA GLY SEQRES 1 A 90 GLY SER HIS MET CYS LEU VAL CYS SER ASP GLU ALA SER SEQRES 2 A 90 GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS SEQRES 3 A 90 VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS ASN TYR SEQRES 4 A 90 LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP LYS ILE SEQRES 5 A 90 ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG LYS CYS SEQRES 6 A 90 LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS THR LYS SEQRES 7 A 90 LYS LYS ILE LYS GLY ILE GLN GLN ALA THR ALA GLY HET ZN B1514 1 HET ZN B1515 1 HET ZN A1512 1 HET ZN A1513 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *143(H2 O) HELIX 1 1 CYS B 457 GLN B 471 1 15 HELIX 2 2 CYS B 492 ALA B 503 1 12 HELIX 3 3 CYS A 457 GLY A 470 1 14 HELIX 4 4 ILE A 487 ASN A 491 5 5 HELIX 5 5 CYS A 492 GLY A 504 1 13 HELIX 6 6 GLU A 508 LYS A 514 1 7 SHEET 1 A 2 GLY B 449 HIS B 451 0 SHEET 2 A 2 VAL B 454 THR B 456 -1 O VAL B 454 N HIS B 451 SHEET 1 B 2 GLY A 449 HIS A 451 0 SHEET 2 B 2 VAL A 454 THR A 456 -1 O VAL A 454 N HIS A 451 LINK SG CYS B 440 ZN ZN B1514 1555 1555 2.49 LINK SG CYS B 443 ZN ZN B1514 1555 1555 2.38 LINK SG CYS B 457 ZN ZN B1514 1555 1555 2.45 LINK SG CYS B 460 ZN ZN B1514 1555 1555 2.30 LINK SG CYS B 476 ZN ZN B1515 1555 1555 2.36 LINK SG CYS B 482 ZN ZN B1515 1555 1555 2.34 LINK SG CYS B 492 ZN ZN B1515 1555 1555 2.38 LINK SG CYS B 495 ZN ZN B1515 1555 1555 2.48 LINK SG CYS A 440 ZN ZN A1512 1555 1555 2.46 LINK SG CYS A 443 ZN ZN A1512 1555 1555 2.40 LINK SG CYS A 457 ZN ZN A1512 1555 1555 2.38 LINK SG CYS A 460 ZN ZN A1512 1555 1555 2.37 LINK SG CYS A 476 ZN ZN A1513 1555 1555 2.34 LINK SG CYS A 482 ZN ZN A1513 1555 1555 2.35 LINK SG CYS A 492 ZN ZN A1513 1555 1555 2.30 LINK SG CYS A 495 ZN ZN A1513 1555 1555 2.46 SITE 1 AC1 4 CYS B 440 CYS B 443 CYS B 457 CYS B 460 SITE 1 AC2 4 CYS B 476 CYS B 482 CYS B 492 CYS B 495 SITE 1 AC3 4 CYS A 440 CYS A 443 CYS A 457 CYS A 460 SITE 1 AC4 4 CYS A 476 CYS A 482 CYS A 492 CYS A 495 CRYST1 39.688 101.310 112.550 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025197 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008885 0.00000